G1322341 (LOC106576605)


Basic Information

Item Value
gene id G1322341
gene name LOC106576605
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 69976706 ~ 70001692 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1509433
TGTGAAATAACATAAAAATTTCTCAAGCAGAAGGCTCTTCCAGAAACCAACATCAATGAGTTAGCAAGTGAACTTGTCAGATTCTGAACGGCCTTCAGCTGCAAAGGAGAAGCTAATGTGTGCACACCATGGCGAAGCCGGACTTGGAGACGACCCAAAGACGGCCCAGGTCGTAGGTCACATGCTTCATTATCATGCACATTGGGATATTGCTCCATCCAGTGCCCTCTGGTTTACTGGCTGTGATGCCATCTCTGGTATAAACACTACCCGCAGAGGTGACCCCAAAGACACTACCATCAGTTGCCACTTCAATCATGGAAAGCTTGCCATCAATGTGACTCCACCCATTGTTTCGGCAGTCTTGATTCAGACTCATTAAGAAGATATCATCATTCTTGTTGACTGCCCAGCACCCAAAAGGTCCGCAACTAGAATACTTCACACTTCCTGGCAATCCTGTCCATGGAAGGGGTGAGCCTGGACCCTTGTAGCCAACTGTGGCACTACTTGTCAGACAGAATGAAGTATCTTTCATGTAGACCCCCACAATAAACTGGTTGCCCCCAGCATCCACTTGCTTCAAACTGCCTGAAgaccacaaagacagacagacaagcaaacATGAAGTGCGTATCTGTGAGTACTGCCAAATTACTTACAATGGCATTATGTTAAACATGTAAAACATTAATCATTCTTTCAACAGCCTGATGGTATCAGGAAAGCTAAGAAGCAGGTGTCCTCTGGATAAATATTGAGTAATGCTCTCCACTAACCTGCAGCTTGCACCCAGTTACCGGCCACATACTTGTAGATTGAGTCTGCCTTGTTGATTCCCCAGATCCCTGCTGGTCCTACAGTGATATGCTTCAGGGAACCAGGCAGGGGGGTCCATTTATCACCTACCAGGTAGTAGGGGATTTGACTTGTGTCCGTAGCAACCACTTGCCCCAGTCCTGCATCGATCTGCATCAGATTCTTGATATCCACTACAGGCTGACAGTCCCAGGCTATGGAGACACCAGATCAAAGACACATGAGTAGAGTA

Function

NR:

description
fish-egg lectin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1509433 True 1051 lncRNA 0.47 5 69976706 70001692

Neighbor

gene id symbol gene type direction distance location
LOC110499754 LOC106609744 coding downstream 49075 69905421 ~ 69927631 (-)
LOC110499751 csrp2 coding downstream 85619 69881224 ~ 69891087 (-)
LOC110500965 osbpl8 coding downstream 146939 69678178 ~ 69829767 (-)
LOC118938965 NA coding downstream 346912 69629658 ~ 69629794 (-)
LOC118938967 NA coding downstream 351577 69625000 ~ 69625129 (-)
LOC110490659 NA coding upstream 391569 70393261 ~ 70394050 (-)
LOC110490652 ctrb coding upstream 394039 70395731 ~ 70397315 (-)
LOC110490645 LOC106576589 coding upstream 541684 70543356 ~ 70547418 (-)
si:dkey-14k9.3 LOC106609712 coding upstream 548896 70550588 ~ 70558751 (-)
LOC110515225 LOC106609712 coding upstream 557304 70558996 ~ 70566048 (-)
G1322348 NA non-coding downstream 77003 69897748 ~ 69899703 (-)
G1322338 NA non-coding downstream 95617 69880641 ~ 69881089 (-)
G1322340 NA non-coding downstream 96148 69879515 ~ 69880558 (-)
G1322334 NA non-coding downstream 100814 69872028 ~ 69875892 (-)
G1322292 NA non-coding downstream 171611 69804491 ~ 69805095 (-)
G1322380 NA non-coding upstream 816 70002508 ~ 70002730 (-)
G1322381 NA non-coding upstream 2022 70003714 ~ 70003946 (-)
G1322403 NA non-coding upstream 25532 70027224 ~ 70027596 (-)
G1322846 NA non-coding upstream 45332 70047024 ~ 70047238 (-)
G1322854 NA non-coding upstream 66662 70068354 ~ 70068609 (-)
G1321997 NA other downstream 413666 69562310 ~ 69563040 (-)
G1321729 NA other downstream 753678 69220303 ~ 69223028 (-)
LOC110490790 LOC106609779 other downstream 819707 69149477 ~ 69163694 (-)
G1321652 nrf1 other downstream 903430 69031026 ~ 69073276 (-)
G1323036 NA other upstream 534760 70536452 ~ 70537139 (-)
G1323207 NA other upstream 1023559 71025251 ~ 71039522 (-)
G1323296 LOC106609674 other upstream 1200808 71202500 ~ 71237846 (-)
LOC118938840 LOC106576579 other upstream 1855591 71841725 ~ 71923263 (-)

Expression


Co-expression Network