XLOC_032161 (lrrc15)


Basic Information

Item Value
gene id XLOC_032161
gene name lrrc15
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 36459897 ~ 36463695 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062846
CACCAACTCATTTCCAAATAATGTGCGAGAGTACATGAGAGCTTTTGTGCAAGGCAGAGCAGTTAACGGCTGACTGTAAAAGGGATAACCAGATAGATATGAGGAGGCAGAAAGGAATCTGACCAAAAAAAACATCCCATCTGTTTAAAAGCAAACGGGGAAACGCTTCAGTGTGACGAGGAGAAACACACATATCTCTGACAAATCTTCAAGGTCAACGGAATCAATGGACCTGGCGTTGTTTGTGATTATTGGCATGTGTGCCATGAAAGCTGTTGCTTCCTCATGTCCAGAAAGCTGCCAGTGCCAAGTGACCAAAATTGTCTGTCAAGGATTTTCAGTGAAAGAAATTCCACTCCCCATGCCCCCAACCATCAACGCTCTTGTTATCTCCAACACCAGCATTCAATCATTAAAACCATCGGATTTTCAGACTTTCGCTGAGACGCTTACACTGTTTGTAGCCAAAAATTCGAATATAACAGAGGTGGAACCTCATACATTTGATCAAGCTTTCAATCTCAATGTCTTAGGTTTCAGTGGGACGATGCTAACCTCTCTACCAGACAACCTGTTTCAGAATCTAACTGCATTAACAACTTTAACACTGAGTGGCAACAAACTAGAAGTTTTGCCATCATCTCTTCTTACTCCACTTGTAAATGTGAACAAATTAGACCTTAGCAAAAACCTTCTCAGCTCTCTGTCAGAAGATGCTTTTAGGGGTTTAGACCAACTAGAAATGCTCATGTTGCAGAGAAACTCAATCAAACAGCTTCACAGCAGCACTTTTCAGGGGCTCAGTCATCTCAGGTCCctgtttttacagcaaaatgaattAACGGATATACCAGCAGGCTTATTTGATGATTTGGTGAACCTTGAGGTATTGCATCTACAAGACAACAAAATCGAGCAATTGCCGGCAAATCTTTTCGCAAAAGTGCAGAAGCTAAAGAAACTCTACCTCTCCAGCAATAGGTTATCATTGCTTCCCAGTGGAATCTTTCTGAATCTTCCCAACCTTACTCATTTTTCACTGTACGACAACCGACTCAGTAGGCTAATGCCTGAGACTTTTGGCCCAATGGCCCTTCAAGAGCTTTGGCTGTATGACAACTTGTTAACCCACCTCGAGGAGAATGTGTTCAGCAATTTAACCAACATACGTCTTTTGGTAATCAGTAGGAACCGAATTCAGTACATCTCTCCCGGTGCATTCAATGGCCTGATAGAGCTTAAGGAGGTTTCCCTTCACACCAATCGATTAACCAATATTGAACCTGGGATTTTCAGAGGCCTTCCAAACTTAGCGAATATATCTATAGAGAACAATCAAATAAAGCAGATACCCATACAACTGTTAGATGGTGTGTCCCGTTTGTCTCTTCTGGAGATGCAAAACAATTCTCTACAAAACTTGCCCAAAGACTTTCTGAACACTTTGTCTATTGTTGAGAATGTTATTCTTCATGAAAATCCCTGGAGGTGTGATCAGGACATAATACCTTTTTGGGATTGGCTTTCACAGCATTCAGAGAAAGTGAAGAACCTTTCCCTCGTGATGTGCTCTTCTCCTCCACCCCTGAATGGTAGAATTGTGAGAGAGCTGATAGAGGATGACATCATGGTCCAAGAAATGACAACTATGACAACGGTTGATACTTCATCACATAACACACCCGCAAGTACAACCAAAAGGCCACCAGATTCAAACTTCACAACAATCTCAGATGAGAAAGAAGACCAAAGTGGAGGTGATGCTGCGGGTCAAGGTCTGTCCAAAGAAAAACTCATTATCATAGTTGCTATCATTTGTACTGCTGTCGTTGTTAGTCTCATCTCCTGTGTGTTATGGAGGAAGAACAAGCGAGGTAGTGAAAACTTAGACCGTCATAGAAAGACAAATGCAGTTATTTAGCATTATCTAAAGGctcaatgtgttgttttattatcTCTGTCTGTTTAAATAATGAGCATTGTCATTTTAACAGCTGTATTTTCTTTGGAAATTTTCTttctttgtaacattttttttctgtcctGCATGCATAGTTGAGCTTACTTACagtttgactgaaaaaaaaaaaaaatcaatgttgaTTGTATGATTTATTGATCATGATTTAATGAATTGTGTCATAATGTAAAGAAATGTACTGTATTGTGTGCAAATGACTGCACACATTCTGCAAatttgagttaaataaatatgtttcttcatg
>TCONS_00062847
ACGGCTGACTGTAAAAGGGATAACCAGATAGATATGAGGAGGCAGAAAGGAATCTGACCAAAAAAAACATCCCATCTGTTTAAAAGCAAACGGGGAAACGCTTCAGTGTGACGAGGAGAAACACACATATCTCTGACAAATCTTCAAGGTCAACGtccctttattaatccggggtcgccacagctgaataaaccgcCGACTTATgcaGAATCAATGGACCTGGCGTTGTTTGTGATTATTGGCATGTGTGCCATGAAAGCTGTTGCTTCCTCATGTCCAGAAAGCTGCCAGTGCCAAGTGACCAAAATTGTCTGTCAAGGATTTTCAGTGAAAGAAATTCCACTCCCCATGCCCCCAACCATCAACGCTCTTGTTATCTCCAACACCAGCATTCAATCATTAAAACCATCGGATTTTCAGACTTTCGCTGAGACGCTTACACTGTTTGTAGCCAAAAATTCGAATATAACAGAGGTGGAACCTCATACATTTGATCAAGCTTTCAATCTCAATGTCTTAGGTTTCAGTGGGACGATGCTAACCTCTCTACCAGACAACCTGTTTCAGAATCTAACTGCATTAACAACTTTAACACTGAGTGGCAACAAACTAGAAGTTTTGCCATCATCTCTTCTTACTCCACTTGTAAATGTGAACAAATTAGACCTTAGCAAAAACCTTCTCAGCTCTCTGTCAGAAGATGCTTTTAGGGGTTTAGACCAACTAGAAATGCTCATGTTGCAGAGAA

Function

symbol description
lrrc15 Predicted to enable Roundabout binding activity and heparin binding activity. Predicted to be involved in axon guidance and negative chemotaxis. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in cardiovascular system; hematopoietic system; ventral mesoderm; and yolk syncytial layer. Orthologous to human LRRC15 (leucine rich repeat containing 15).

GO:

id name namespace
GO:0050919 negative chemotaxis biological_process
GO:0007411 axon guidance biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0048495 Roundabout binding molecular_function
GO:0008201 heparin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-031113-8 Predicted to enable Roundabout binding activity and heparin binding activity. Predicted to be involved in axon guidance and negative chemotaxis. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in cardiovascular system; hematopoietic system; ventral mesoderm; and yolk syncytial layer. Orthologous to human LRRC15 (leucine rich repeat containing 15).

Ensembl:

ensembl_id ENSDARG00000070792

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062846 False 2225 mRNA 0.40 2 36459897 36463695
TCONS_00062847 True 748 mRNA 0.42 3 36459962 36462231

Neighbor

gene id symbol gene type direction distance location
XLOC_032160 NA coding upstream 44811 36414723 ~ 36415086 (+)
XLOC_032159 rhcgl1 coding upstream 68210 36381709 ~ 36391687 (+)
XLOC_032158 BX936433.1 coding upstream 174786 36281005 ~ 36285111 (+)
XLOC_032156 NA coding upstream 200743 35916253 ~ 36259154 (+)
XLOC_032157 NA coding upstream 340007 36116704 ~ 36119890 (+)
XLOC_032162 BX950188.1 coding downstream 1652 36465347 ~ 36618498 (+)
XLOC_032163 BX950188.2 coding downstream 48117 36511812 ~ 36511930 (+)
XLOC_032164 NA coding downstream 250664 36714359 ~ 36714622 (+)
XLOC_032165 si:ch73-29l19.1 coding downstream 331530 36795225 ~ 36819369 (+)
XLOC_032166 tmem45a coding downstream 357926 36821621 ~ 36837536 (+)
XLOC_032155 NA non-coding upstream 635521 35794657 ~ 35824376 (+)
XLOC_032171 BX950870.1 non-coding downstream 526875 36990570 ~ 36990684 (+)
XLOC_032172 NA non-coding downstream 720498 37184193 ~ 37250364 (+)

Expression


Co-expression Network