XLOC_032165 (si:ch73-29l19.1)


Basic Information

Item Value
gene id XLOC_032165
gene name si:ch73-29l19.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 36795225 ~ 36819369 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062851
AAAACAAAAGTCACGCCAGTCTGGATTGCATGTAAAGccACCTGTCAGCTGAACAAAGACTGCACTGGGTCATTATCTTCCTCTTTGAGTGTCTTCAGTTGGCAAGTCTCAGCTAGAAGCCATGCAGGCGAATCATCTCCATGTTAACACCATGGCCCCTGTGCCTGTCCATCTAAAGAGCCGTGAGGACAAAGAGGTGCACTCTCACCCTCGCGCCCGCCGTGTGTCTTCAGATGAAAGCAGCCGAAACAAAGTGGGACCTGAATGTCACATCACCACCATCCCTGAGCTCTCTGAGTGCTTAGAGAGGAGGCTGCGTTTCCACAACCACAAGGCAGATGCAGATAGCATATGTCTCATTTGCCATGAAGGACTACGGAAAGAAAGGGGGAGTTTCCAAGAGCTTTACTGTGGCCATCATTTTCATAAAGAGTGCATTGAAAAATGGTTTTGGCAGAGACAGTCATGTCCCAGCTGTCGAGTTCATGTGACCATGCCTGCGCCCATCTACTGGTCCTCTGCTCGCATTCATTTTCCCTGACAATGTCTATATTTTTCACCGCATGATCAGTTCTATGTCTGCTTGCTGCATGTGACTCTGTGCACTGATTTAgtgtttatatgtaaataaaaacaaaataagaccATAATCTCTGGGTGAAGACAAGGGCTTAAAACTTTAGCTAGCTGTCTAGCTTTCCTGCATGGTTATACAGCCTGTTGCTTGCATATGCTGCATGAGATTAGACCATTTAGAATATGCATGTTCTTATTAATCTCAAGAGAATTTGTACTTTGTCCTTTACCCTCCTTTTATGAT
>TCONS_00062852
tctctctctctctctctctctatctctatatCTCACCAGCTCACCCTCTCCCTCTCATTTACCCCTCTACCGCCCTTATACTACATTACATTTCCCTCCCTCTCTCATGTTAAGGGGATTCACTTATTTAGAGTCTTGGACAAAGGCTGTGTGTACATATTTTTGGGTCGGCTTAAACCCACACAAACTGGGAGAAATCTAATTATAAATCTATCGGTGAGCCAAGCCGAGCTCATCGTGGAGTCTAGACCTTCAATGAAAGAGGTTCTGTGAAGCTCCAGGACAACAAACGTCAACATCAGGTCCGTCTGAGCCGGTTGGATCATCAGCCTTTTTTTCCAGGACACAGGAGCCTCATAGAGTGCTCCACACTACACGTCTCAAGCTGTCTCTTCGGCTGCTTCCAGCAATTATTATGGACAATGAGGACGATGATGATGGCAACTTTACCAAGTGGATGAGCAGTTATTGGGGCCACGGGGTTGGGGAGGACCACGCCAAAGAGAGGAAGAGGAGCTTCAGGAGGCCGTCCCGCAAGAAAGCTGACCGCCGTGCATCACTGCCTTGCATGTCTCAGCTAGAAGCCATGCAGGCGAATCATCTCCATGTTAACACCATGGCCCCTGTGCCTGTCCATCTAAAGAGCCGTGAGGACAAAGAGGTGCACTCTCACCCTCGCGCCCGCCGTGTGTCTTCAGATGAAAGCAGCCGAAACAAAGTGGGACCTGAATGTCACATCACCACCATCCCTGAGCTCTCTGAGTGCTTAGAGAGGAGGCTGCGTTTCCACAACCACAAGGCAGATGCAGATAGCATATGTCTCATTTGCCATGAAGGACTACGGAAAGAAAGGGGGAGTTTCCAAGAGCTTTACTGTGGCCATCATTTTCATAAAGAGACAAAATGGCCCGAGCATGGCACACGGCCACGTAGTGGGAGTTCTGCACCGGCGTGTGAACGAGGAAAGGAGATACCATTCTGTCCAGGACAAGAGGAGTATCGGTTGCCCCGTCGCCAACTCTCTTTACGTCGACAACGttaattattttcagtgtaacAGTGTACCAATAATCGTTTAGATTTTGTGTTTACCTACACACCATATTTGTTTTAAAGTCCTCAACAGGATCTCTAATTTGCAGGGATTCTTTGTTTTCCtctcttttattcattaattaatcgTTTAATTGTTCAGTAAgtcatttataattaatttttatatgtatattacaataaaaaagtgaTAAGTTTTAGTACTGTCTGCCATTCTTCTGTGTTTAAGTATCCTGAATTTGCAGGTCATATGTCAGGAGTTGCAATTGAGAGGCTATAGCtttttaaatgcacatgctgGAAATTAGCTTGTGGCTAATCACGCTACTGTAATGGAAATCAATACAGGGGCACAAATCTGACACTCATAAGGTCAACAGATCTGTTTTTGAACGTGGAGTTGTCATGCAAGCGTATTCATGTTGTACACTGCATAGTGACATTTAGAGCATTGACAGTGAAATCGACATTGTTTCCTTTAgcatttatgcttttaaaaaaactcgtattttttattcattaaccATTATTCAAGCATTTAAGCAAAATGTAGATTAAAAGAGTTTTATATATCCGTATATATAACACAAACGTCAATTCAGACtgaaagtatatattttgtttagcGTGTCGCTCTTTATCAGCAATGTTTCAACATTTTGTAGCATGTGCAAATGTATGTTAcaattattttcaattttctgTATTACAGCTAGACTCTTAATGACCTTCCATCGTTTGGCTTCCCTCTCTTTCAGTGCATTGAAAAATGGTTTTGGCAGAGACAGTCATGTCCCAGCTGTCGAGTTCATGTGACCATGCCTGCGCCCATCTACTGGTCCTCTGCTCGCATTCATTTTCCCTGACAATGTCTATATTTTTCACCGCATGATCAGTTCTATGTCTGCTTGCTGCATGTGACTCTGTGCACTGATTTAgtgtttatatgtaaataaaaacaaaataagaccATAATCTCTGGGTGAAGACAAGGGCTTAAAACTTTAGCTAGCTGTCTAGCTTTCCTGCATGGTTATACAGCCTGTTGCTTGCATATGCTGCATGAGATTAGACCATTTAGAATATGCATGTTCTTATTAATCTCAAGAGAATTTGTACTTTGTCCTTTACCCTCCTTTTATGATTTACCCCCTCTTTTTTTCTCTATGGCGTTGTGAGTTCGACTAGGCTGAAAAAGGCACATCTGACGccaaccccacccctcacagtaacatcactagctccattgagtgctttgtgtctgagattgcatgtCTGATATTGCAAGTCTCAGCTTACAGCAAGTCCGCAGTCAAATACTCTTGGAAAAATAATGCATGCTAAGTGTCTAACCTCATGAGTCTTTTTGTTTCGTCATCTCTCTCCACTCTGTATTCCACATTTTGCACATCTGCATTACCTGTTAATGTACAAATGCCAAATTCCAGAAAAAAATGTCCAGGGTGTTATAATAATCTAAAGTGTAAATGATTGTTTCAGAGTTATATATGTTGTTTGTACCAAATTCATtcatgtaattaaatatttagagGTT
>TCONS_00062853
gtatttctggcAACCAGAAGTGCCAGTTCTGTAAATTATAcagcaatttttttacagtgcactgtagACAAAATGCATGAATATCCTTATACTAATGGATGATTTTGGCTTGTGTATTTGTAGGCAGATGCAGATAGCATATGTCTCATTTGCCATGAAGGACTACGGAAAGAAAGGGGGAGTTTCCAAGAGCTTTACTGTGGCCATCATTTTCATAAAGAGACAAAATGGCCCGAGCATGGCACACGGCCACGTAGTGGGAGTTCTGCACCGGCGTGTGAACGAGGAAAGGAGATACCATTCTGTCCAGGACAAGAGGAGTATCGGTTGCCCCGTCGCCAACTCTCTTTACGTCGACAACGttaattattttcagtgtaacAGTGTACCAATAATCGTTTAGATTTTGTGTTTACCTACACACCATATTTGTTTTAAAGTCCTCAACAGGATCTCTAATTTGCAGGGATTCTTTGTTTTCCtctcttttattcattaattaatcgTTTAATTGTTCAGTAAgtcatttataattaatttttatatgtatattacaataaaaaagtgaTAAGTTTTAGTACTGTCTGCCATTCTTCTGTGTTTAAGTATCCTGAATTTGCAGGTCATATGTCAGGAGTTGCAATTGAGAGGCTATAGCtttttaaatgcacatgctgGAAATTAGCTTGTGGCTAATCACGCTACTGTAATGGAAATCAATACAGGGGCACAAATCTGACACTCAT

Function

symbol description
si:ch73-29l19.1 Predicted to enable metal ion binding activity. Orthologous to human LNP1 (leukemia NUP98 fusion partner 1).

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-141222-33 Predicted to enable metal ion binding activity. Orthologous to human LNP1 (leukemia NUP98 fusion partner 1).

Ensembl:

ensembl_id ENSDARG00000100255

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062851 False 820 mRNA 0.45 5 36795225 36818959
TCONS_00062852 False 2608 lncRNA 0.42 4 36807804 36819369
TCONS_00062853 True 746 lncRNA 0.38 2 36817148 36818183

Neighbor

gene id symbol gene type direction distance location
XLOC_032164 NA coding upstream 80603 36714359 ~ 36714622 (+)
XLOC_032162 BX950188.1 coding upstream 176727 36465347 ~ 36618498 (+)
XLOC_032163 BX950188.2 coding upstream 283295 36511812 ~ 36511930 (+)
XLOC_032161 lrrc15 coding upstream 331530 36459897 ~ 36463695 (+)
XLOC_032160 NA coding upstream 380139 36414723 ~ 36415086 (+)
XLOC_032166 tmem45a coding downstream 2252 36821621 ~ 36837536 (+)
XLOC_032167 sft2d2a coding downstream 20140 36839509 ~ 36844020 (+)
XLOC_032168 chd1l coding downstream 24758 36844127 ~ 36877587 (+)
XLOC_032169 traf3ip2l coding downstream 58599 36877968 ~ 36901130 (+)
XLOC_032170 negr1 coding downstream 123597 36942966 ~ 37164417 (+)
XLOC_032158 BX936433.1 non-coding upstream 510114 36281005 ~ 36285111 (+)
XLOC_032171 BX950870.1 non-coding downstream 171201 36990570 ~ 36990684 (+)
XLOC_032172 NA non-coding downstream 364824 37184193 ~ 37250364 (+)
XLOC_032175 NA non-coding downstream 494968 37314337 ~ 37315909 (+)
XLOC_032176 BX324166.1 non-coding downstream 515190 37334559 ~ 37334963 (+)
XLOC_032178 NA non-coding downstream 650747 37470116 ~ 37476101 (+)

Expression


Co-expression Network