XLOC_032167 (sft2d2a)


Basic Information

Item Value
gene id XLOC_032167
gene name sft2d2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 36839509 ~ 36844020 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062855
GCAGAGTATGGTGGTGTATTGATTGTTTTGATTCCCTAAAATCCCATCTTCGTACAAGAGTACTGACATACTTTTATAGAGGCAGCAATAGGTGGCGTGCTTGAGCAACAGGTAAATTCTTGAATGAAGGGAGATGAAGTTAAAGGTGAGCAGTGATGTCGTGCGAGAGTGCCTGTTGAACGATGATACAACACATTCTCAGAGATTTGGAGTGAATTAATTAGTGGATATAAAGAATTAAGAGTTCAATAATGGACAAACTCAGAGCGGTTCTGGGTGGTCGGGATGGAAACAATGATAACAGGAACATACTGCAGGCGGCGAATGAAGCGTCCACACTGGGATGGGGAACGCGCGTGAAAGGATTCGTTGGTTGTTTGGTCGTTGGAGTAGTGTTCTCTATCTTGGGAGTAGGTTGCCTGTTTATTCCCAAAATTGGGATACttctttttgttgtgttttatacatTGGGAAACGTTTGCTCCTTAGCAAGCACCATGTTTTTAATGGGACCAGTGAAACAGCTGAAACGCATGTGTGACAAGACCAGAGCCTTTGCTACTGTTGTGATGATAACATGTCTGGTTCTCACACTCTGTGCAGTATTTTGGTGGAAGATCTTTGCTCTCACTCTGCTGTTTGTCATTCTTCAAGTCCTTGCATTTGCATGGTATGGCCTCTCATACATCCCTTTTGCAAGGTTAGTCATTATTTGtgattttaacatattattttgtCTTAAAATATTGAATTAGATAAAACATATTAAGCATTTGATGGATGTGTGAATATTTGttaggtggttcattctgctgtggcgacccctaaaatagagactaaactgaagaaagtaaatgaatgctagaaaataaatatgacacaaTTGAAACCAAGTACAGTATTTTTAATTCTCTATGCTGTCTTTGTCTTAACCAGGGATGCTGTACTGAAGTTTTTCTCCATGTTGTGCAACATGTGTATGAAATGAAGAGCTGATGTTTATCCTTTCATCACTCTGGGAACTGGGAACACTCTGCTCAAGTATTCTGCAATTCTGGGGTCCACAAATAATCACTGAGACTATGGGATGGTGCTAGTTGTAATCGCTAACGTTAGCTGGACGACATGCTAAATCTGACTGTACAAAAGATTACATTTTActgaatgtgttttaaatgtgttgtaaaaCAGATTTGTAAATGTTATGAAATGTCTTAAAATTGATATTTATTAAAGTAGATATTGCAGTTATATACTAAAAAGCTGACcttctatttttttctgtatCTTTGTCTGATACTATTTGTAAATGAAGTCTagctcaatttttttttctgtgtcagAATGTTGAATATAATTCAAAGGATAATCCGAGATTTGAGAATTTAAGATCTT
>TCONS_00062856
GAATGAAGGGAGATGAAGTTAAAGGTGAGCAGTGATGTCGTGCGAGAGTGCCTGTTGAACGATGATACAACACATTCTCAGAGATTTGGAGTGAATTAATTAGTGGATATAAAGAATTAAGAGTTCAATAATGGACAAACTCAGAGCGGTTCTGGGTGGTCGGGATGGAAACAATGATAACAGGAACATACTGCAGGCGGCGAATGAAGCGTCCACACTGGGATGGGGAACGCGCGTGAAAGGATTCGTTGGTTGTTTGGTCGTTGGAGTAGTGTTCTCTATCTTGGGAGTAGGTTGCCTGTTTATTCCCAAAATTGGGATACttctttttgttgtgttttatacatTGGGAAACGTTTGCTCCTTAGCAAGCACCATGTTTTTAATGGGACCAGTGAAACAGCTGAAACGCATGTGTGACAAGACCAGAGCCTTTGCTACTGTTGTGATGATAACATGTCTGGTTCTCACACTCTGTGCAGTATTTTGGTGGAAGATCTTTGCTCTCACTCTGCTGTTTGTCATTCTTCAAGTCCTTGCATTTGCATGGTATGGCCTCTCATACATCCCTTTTGCAAGGGATGCTGTACTGAAGTTTTTCTCCATGTTGTGCAACATGTGTATGAAATGAAGAGCTGATGTTTATCCTTTCATCACTCTGGGAACTGGGAACACTCTGCTCAAGTATTCTGCAATTCTGGGGTCCACAAATAATCACTGAGACTATGGGATGGTGCTAGTTGTAATCGCTAACGTTAGCTGGACGACATGCTAAATCTGACTGTACAAAAGATTACATTTTActgaatgtgttttaaatgtgttgtaaaaCAGATTTGTAAATGTTATGAAATGTCTTAAAATTGATATTTATTAAAGTAGATATTGCAGTTATATACTAAAAA

Function

symbol description
sft2d2a Predicted to act upstream of or within protein transport and vesicle-mediated transport. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Is expressed in spinal cord. Orthologous to human SFT2D2 (SFT2 domain containing 2).

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050227-13 Predicted to act upstream of or within protein transport and vesicle-mediated transport. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Is expressed in spinal cord. Orthologous to human SFT2D2 (SFT2 domain containing 2).

Ensembl:

ensembl_id ENSDARG00000070746

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062855 False 1395 mRNA 0.37 7 36839509 36844020
TCONS_00062856 True 905 mRNA 0.40 8 36839630 36843887

Neighbor

gene id symbol gene type direction distance location
XLOC_032166 tmem45a coding upstream 1973 36821621 ~ 36837536 (+)
XLOC_032165 si:ch73-29l19.1 coding upstream 20140 36795225 ~ 36819369 (+)
XLOC_032164 NA coding upstream 124887 36714359 ~ 36714622 (+)
XLOC_032162 BX950188.1 coding upstream 221011 36465347 ~ 36618498 (+)
XLOC_032163 BX950188.2 coding upstream 327579 36511812 ~ 36511930 (+)
XLOC_032168 chd1l coding downstream 107 36844127 ~ 36877587 (+)
XLOC_032169 traf3ip2l coding downstream 33948 36877968 ~ 36901130 (+)
XLOC_032170 negr1 coding downstream 98946 36942966 ~ 37164417 (+)
XLOC_032171 BX950870.1 coding downstream 146550 36990570 ~ 36990684 (+)
XLOC_032172 NA coding downstream 340173 37184193 ~ 37250364 (+)
XLOC_032160 NA non-coding upstream 424423 36414723 ~ 36415086 (+)
XLOC_032158 BX936433.1 non-coding upstream 554398 36281005 ~ 36285111 (+)
XLOC_032175 NA non-coding downstream 470317 37314337 ~ 37315909 (+)
XLOC_032176 BX324166.1 non-coding downstream 490539 37334559 ~ 37334963 (+)
XLOC_032178 NA non-coding downstream 626096 37470116 ~ 37476101 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_07698442_07700739 NA coding CI01000340 null 7698442 ~ 7700739 (+)