XLOC_032168 (chd1l)


Basic Information

Item Value
gene id XLOC_032168
gene name chd1l
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 36844127 ~ 36877587 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062857
CAGCGTCAGTTTTGCTACCCGCCCATTCACTATTGCAGGAAGTAGAAAAACAAGTCACGTCAAACTGGCGCGCACAAGCTATTAAAGAGAAAAGAAATTCAGATGATTTAACATAAACGTAAACAACAAGGATGTCCACATTTCTTCGAGCAGTCAGAAACAACATACCAGAAAAGGACAAATCTGAACTAACGGAGAATGACCTGAAGAAATGGGGACTTGGAGCTATTCATCTGAGGCCTTATCAGCTGGATGGAGTGAAGTGGCTGTCACTGTGTATGAAGAACCAGCAGGGCTGCATCCTCGGTGATGAGATGGGTCTGGGCAAGACCTGTCAGACCATCTCTTTGCTGGCGTATGCTCGAGGAAGCCTTAAGATGAACGGGCCGTTCCTTGTGCTTTGTCCCTTGGCTGTTTTGGAGAACTGGAGGCAAGAGTTGGAACGTTTCTGCCCTAGTCTGTCTGTGATCTGTTACACTGGGGATAAAGAGAGAAGGGCAGAGCTCCAGCAAAACCTAAAGAGTGACCCACGGTTTCATGTTCTTCTCACCACCTATGAGATGTGCCTTAAGGATGCCCGCTACCTAAAAAGCTGGAAATGGAAGATTTTAGTTGTGGATGAGGCTCACCGCCTCAAGAACCAGGAGTCGTTGCTTCACCAAACCCTCAAAGAGtttacaGTGGGATTTCGAGTGCTACTGACAGGCACCCCCATTCAGAATAACTTACAAGAAGTCTATTCCCTCCTCACCTTCATCCAGCCCAGTGTGTTTCTCCCTGAAGCTGTTGAGGACTTTGTCAATGCCTACGCAGACATACAGACTGAACCTGCTCTTGTCGATGAGCTTCATCAAGTGCTCCAGCCGTTTTTGCTGCGCAGGGTTAAGGCAGAAGTGGCGGCCGAACTGCCCAAGAAGACAGAGCTCGTAGTTTTTCATGGGCTGTCTGCTCTTCAGAAGAGATACTATAAAGCCATTCTGATGAGAGACCTTGaTGCCTTTAGGACCGATCAAAGCACGAAGACCCGACTTCTGAATGTTTTAATGCAGCTCAGGAAATGTGTGGACCATCCCTACTTGTTCGATGGAGTGGAGCCAGAACCGTTTGAGATGGGGGAGCATTTAGTGGAGGCCAGTGGAAAGCTTTCTTTGCTGGACAGCATGCTGGCGTATCTTCAGGAGGGAGGCCACCATGTTCTTCTGTTCTCTCAGATGACCAGGATGCTGGATATTCTGCAAGATTACTTGGAGTACAGAGGTTACAGTTATGAGCGTCTGGATGGTTCAGTCCGTGGAGAGGAGCGTAACCTTGCTATCAAAAACTTCAGCACcaaagatgtttttatttttctcctcAGCACCAAAGCTGGAGGGGTCGGCATGAACCTCACTGCAGCAGACACTGTGATATTTGTGGATGGTGATTTCAACCCACAGAATGACCTCCAAGCAGCAGCCAGAGCACACCGGATTGGTCAAACAAGGCCTGTTAAAGTGATCCGACTCCTTGGTAGAGATACCATAGAAGAGATCATCTATTCCCGCGCTGTGTCTAAGCTGCGTCTCACAGACACCGTGATCGAGGAAGGACGGTTTTCTCTTTTGGACCAGGCTCAGTCTGCAGCTTCTGGCCTTCAGTTATCTGAGATCCTGAAGTTTGGTGTTGATAAGCTGCTGTCATCAGAGGAGAGCTCAGTTCAAGATGTAGACCTCCAGCTGATTCTGGGTCAATCTCGAGACGGGCAGTGGCTGACGGACGAAGAGCACGCCAAGCTTAATGAGAGCAACGAAGAGGAAGATGAGGACATGGAGGGTCAAAACCACATGTATTACTTTGAGGGGAAAGACTACTCTAAAGATCCCAGCGCAGAAGATGAGAAGACCTTTGAACTGTTACTTGAAAAGCAGTTTGCTGAGATGGAGGATGCTGAGAAGGAAGGCCGCGCACTTCGCAACAAAGCCGGgGTGTCCCTGTCTGGTCCCTTGATCAACCCAGCGAGGAAGAAGAGACCTCTAACAGAATCAGAGTTAGAAGAAAGACGTCAGAAGAGACAAGCAGCTGCTGCAAAGAGGGCGAAGCTACAGGAAGAAAGGAAGAAGCAACAGGAAGAACTAAATTACAAGAAAAAGATGGCATGGTGGGACTCATGTGGCTACAGATCACTGTGTTTGCCACGCGTCGACAGTGAGGGTGAAGATATGGAGCCTGATGAAGATGATCACGTCAGCTTTAGCTCCACCGATTCAGATCACACAGCCATTCGATATGTGCTGGGTGATGTAACTCATCCTCAAGCCGATCGAGAGGATGCCATCATTGTGCATTGTGTTGATGACTCTGGACACTGGGGCCGGGGAGGATTATTTACTGCACTGGAGCTCAGATCAGACGAGCCGAGGAAGCAGTACGAGTTGGCCGGCGACATGAAAGACCTAGAGCTGGGAAATGTTCTGCTTTTTCCCGTTGATGACAAACAGTCGAGGCTCTGTGGAAGAGATTACCTGGCTCTCATAGTTGCCCAGCAGAGGGATAAAGCCAACAAGTTGTCAGGCATTCGGCTCACTGCCTTGGATGAAGGCCTCAAGAAGATCTACAGAGCTGCCAAACAAAAGAAGGCAAGTGTCCATCTGCCTCGGATTGGTCATTCCACTAAAGGCTTCAACTGGTACGGTACAGAGAGACTCATTCGCAAGCACCTGGCCACCAGAGGAATCTTCACATCCATTTACTACTACAGACGAGGATCTTCACACACTACAGTGTCTTCCACTGCTAGCACCACCACTCCATCAAGCTCAAAGCCTGCAGCATCCTCACCATCTGAGTCCCCACACTCCTCCAGTCCTCCGGCTAACAGAGAAGGTCTAACAAAGTCAGCAGAACTCTCCACTACATCACATGAAGGTCCGGGGGCTCCAGGGTTGGCTGACTTCATGAGAGGCGTTCATGTCTACTTTTATAACATGGCTGCTACAGAGAAGAAGAAACTAACCCGCTACCTTATCACATATGATGGTGATGaagaggatctcatgagctcacaTGTCACTCATATTGTAGGAGAGGTAGAAAGTCCAGTCCATAAACAGGAGCTCCAAGATCTATTGCATCAGTACCCTCAGGCCCTCCTTGTAAAGAAAAACTGGCTGGAGTTTTGCTTTGCCAGCCAAAGGAAAGTCAGTGTGTCTAAATATGTAATTAGGTTGACTTGACAAAGCTCCTGCTGCATTTCTTCAAAGAGACTGATCACATCAGATCGCCTTGGGTTAATTCACAATCGCATCTAGTGTCTGTTTGGGGTTTGAAATGAACTGATCTGTTCTTGTACATCCAGTTATGGTGAAATGGCATCAAGAGATTTGTCGGAGTAGTAATCAAGCAATAAAGCAATGCTCTCTTTTTAATGAGAAACAACAACACTGTAGATACTTTGCAGTAAACTCTGACGCATATACTCTATCCATGCACTATTTTGTTTGTGTAGTGAGTGAATGTAAATTGTGTACATGATTTCACGTAATAACCAGAGCTTGGTTAACAAATGCAGCATTGTTTTAATAGTcagtttactgtatttttattgtttaaggtaaaaaaattaagtgtaaATCAtctaatgcactgtaaaaactaaatatataattgATCAAATGTGTTACATTGGGAGAGGTGAAAAACAGAAATACAACAAATCTACCATACATAGTTTTATAAAaacaaccctactgaaaaaaaacagcttaaccTAGGTTGGTCaggctttttcttttcttttagctGGTCacccaagctggttttagctggtttcctATGCTGGTCATACCTGGTTTGTCAGAGGGTTTTGGACACTTTTAGCTGGTCTTCGTTGGTcagcttggtcttagctggttttagcagttcagactggttttagaggggttttgggtagtttttagctggtcttagtaGGTCAGGCTggccttagctggtcaggctggctggtcttagctgttttttagctggtcaggctggtctTAGTTGCTTTTACcaactagtttaaaaaaaaaaaaaaaaaaaaaaaacaggctgtgATACCCCGTAAGACCAACGTGGACAGACTGGGAGACCAACTCAAACCAGactgggagaccagctaaaaccagactggtcagaCTGGGagaacagctaaaaccagctgaccaggctggttttggcCGTTCTCCCactctggttttagctggtctctgAGAGTATAGACTggtttagcagttttttttagcagggaaatCAAACATATTGTGTAAAAGCTGTTGGTTCAGAGTCAGATCTCGGATGTTGGTTTTACTCAGAAAAAGCATAGCTCTGCAAACCAAACCACAGATGTCTATGATAATGCACTTCTCTATCTGGAAATGTTATTGCAGGTTTTTcattataattaaaatgaaaccaaataaa

Function

symbol description
chd1l Predicted to enable nucleotide binding activity. Predicted to be involved in cellular response to DNA damage stimulus and chromatin remodeling. Predicted to act upstream of or within DNA repair. Predicted to be active in nucleus. Orthologous to human CHD1L (chromodomain helicase DNA binding protein 1 like).

GO:

id name namespace
GO:0006338 chromatin remodeling biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0003678 DNA helicase activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016887 ATPase activity molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-040426-892 Predicted to enable nucleotide binding activity. Predicted to be involved in cellular response to DNA damage stimulus and chromatin remodeling. Predicted to act upstream of or within DNA repair. Predicted to be active in nucleus. Orthologous to human CHD1L (chromodomain helicase DNA binding protein 1 like).

Ensembl:

ensembl_id ENSDARG00000015471

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062857 True 4437 mRNA 0.46 25 36844127 36877587

Neighbor

gene id symbol gene type direction distance location
XLOC_032167 sft2d2a coding upstream 107 36839509 ~ 36844020 (+)
XLOC_032166 tmem45a coding upstream 6591 36821621 ~ 36837536 (+)
XLOC_032165 si:ch73-29l19.1 coding upstream 24758 36795225 ~ 36819369 (+)
XLOC_032164 NA coding upstream 129505 36714359 ~ 36714622 (+)
XLOC_032162 BX950188.1 coding upstream 225629 36465347 ~ 36618498 (+)
XLOC_032169 traf3ip2l coding downstream 381 36877968 ~ 36901130 (+)
XLOC_032170 negr1 coding downstream 65379 36942966 ~ 37164417 (+)
XLOC_032171 BX950870.1 coding downstream 112983 36990570 ~ 36990684 (+)
XLOC_032172 NA coding downstream 306606 37184193 ~ 37250364 (+)
XLOC_032173 zranb2 coding downstream 423754 37301341 ~ 37307487 (+)
XLOC_032163 BX950188.2 non-coding upstream 332197 36511812 ~ 36511930 (+)
XLOC_032160 NA non-coding upstream 429041 36414723 ~ 36415086 (+)
XLOC_032158 BX936433.1 non-coding upstream 559016 36281005 ~ 36285111 (+)
XLOC_032175 NA non-coding downstream 436750 37314337 ~ 37315909 (+)
XLOC_032176 BX324166.1 non-coding downstream 456972 37334559 ~ 37334963 (+)
XLOC_032178 NA non-coding downstream 592529 37470116 ~ 37476101 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_07701724_07717637 CHD1L coding CI01000340 null 7701386 ~ 7717852 (+)