G1323233


Basic Information

Item Value
gene id G1323233
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 71060260 ~ 71062184 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1510529
tttagtattaaaatatatttgaggAGTGATTCAAAATGAAACAGTTGCATAGCAGAAGAAACAAACGAGCTGATGACGACGTGACAACTATTTGGCAAATGATTTAAGGATGTTTGAAATCCATTGAAATGGTTTCAGAAGAATTGACAGTGGTGACAGGGATCACTAGAGAAAGGCAGTACCTGTGCTGTAGACAACCTCCACAAGTCATGGTGGTTCACAGCTCAATGATTTACACAAGTACCATTCAATTATATACATAAGTAATGATCATTTTAGCATTTCTCTTTTCCATATCTAGTCTCATGTTTCACACACAGGCAATGGTCTACAACGACAATAAGAGCCATTTTGAAATaaacagttttaaaaaatgaTACAGGAAAAACAATTATGGCATAAAACATACCAGCAAACATTCTATActatcagcattgagctaaagtGGTTACTATTTCAGATAAACATTAATCTATCCACATAGTACTATTTCAGATAAACAGAGCCCTGATTCATCTATCCACATACGTACTATGTCTGGACCCAAGATGGAAAAATGAAGACAAATGATTTATTTATTGTATAAAAATGAGAAGATGTTCAACTTCAGCTCTACTGTGTATTGGCACTTAGTTAGAGCTCCTACACACGCTTGACTATGTCCACCAGTTACTTTCAGTGAGACGTTGATATCAATGGTACAGTATGAATGTGCTTCATCTTTTAGTCCGGTGGGCTGGTTTTACTACCGTATAGGGGAGAGCTGACCCTGAATAGGGACACAGTCATCATGTGAAGAGGTTCAAggctgcaccctattcccctgcatagtgcactacactgAGAACCCACATCCAAAATATATCAACGACAAATACAAATCATGACAAAAACAAAGTGATTAACCAGTCATAACTAGCCAATGGCAATGCAGATTACACAGTAAGCAACCAATCGATTAAACACAGGATATGACATCATGGAACACCCTGCTTCTTCGCTTCTAGAAACTTTTTAAAAACACAAATTAACAAACTTAGTTGTGCCCATCCATCCTTTAAAAAATAATTTCATCTTGGTATGTAAAGCGTCTTTTGCATAAAGCCTGTGccataaaaatatatttacatacaacACCACTCTCCTAAGTCGGGTCTACTCTGGAGCACATTAAACATCTGATTCTCTGTGCAAGCTGCAAGTCATCAACACCAGGTTGTATATCATGGGACTGACAGGTATAGTTGCTATGGTTGGTCAGTGGTGGTGTACCGTATATCCTCTGTAGGCTGGGTTTACAGTCTGCTAGCTCACTCAGGGACTATACTGAAGGCCCTTGCTCATTCAGTCTATAGGATCcatagagtcagagagagagagagggagactgatgATTAGGGATCACCCTGTCCAACTTTGGCCCAGTAGCTCTGCTCCTTTACAAGTATTTTGGCCAAAACGCAATAGTTTCCCACAGCTTCTCATGTCTCTAGGGGGAAGAGATATGTGTAGCTCTTCATGGTTGATACTGTAATAGTCTGAAGTCTGCCTCAGTCTCCGGTCCCCCTCATCTTGGTCTACAGAGTGGTCCCAtagctcctccccctttctctaggggtcagaggttaaagATCGGTGACTTTGTTCTCGAGGGCGGCGGCTATCTGCTGCAGCCGCAGGGTCAGCTGTTTACTCTGGGCGGCTGGG
>TU1510530
TTGGATGCACCTTAAAGACATAACCAGGTCAATATGTGAGGATATATGCAGCATCACATCATGTACCATAGAGACATTCTATTCATCTACCCCCTATAGCTTCAGCAtgacaacacagcaacacagtggtttagtattaaaatatatttgaggAGTGATTCAAAATGAAACAGTTGCATAGCAGAAGAAACAAACGAGCTGATGACGACGTGACAACTATTTGGCAAATGATTTAAGGATGTTTGAAATCCATTGAAATGGTTTCAGAAGAATTGACAGTGGTGACAGGGATCACTAGAGAAAGGCAGTACCTGTGCTGTAGACAACCTCCACAAGTCATGGTGGTTCACAGCTCAATGATTTACACAAGTACCATTCAATTATATACATAAGTAATGATCATTTTAGCATTTCTCTTTTCCATATCTAGTCTCATGTTTCACACACAGGCAATGGTCTACAACGACAATAAGAGCCATTTTGAAATaaacagttttaaaaaatgaTACAGGAAAAACAATTATGGCATAAAACATACCAGCAAACATTCTATActatcagcattgagctaaagtGGTTACTATTTCAGATAAACATTAATCTATCCACATAGTACTATTTCAGATAAACAGAGCCCTGATTCATCTATCCACATACGTACTATGTCTGGACCCAAGATGGAAAAATGAAGACAAATGATTTATTTATTGTATAAAAATGAGAAGATGTTCAACTTCAGCTCTACTGTGTATTGGCACTTAGTTAGAGCTCCTACACACGCTTGACTATGTCCACCAGTTACTTTCAGTGAGACGTTGATATCAATGGTACAGTATGAATGTGCTTCATCTTTTAGTCCGGTGGGCTGGTTTTACTACCGTATAGGGGAGAGCTGACCCTGAATAGGGACACAGTCATCATGTGAAGAGGTTCAAggctgcaccctattcccctgcatagtgcactacactgAGAACCCACATCCAAAATATATCAACGACAAATACAAATCATGACAAAAACAAAGTGATTAACCAGTCATAACTAGCCAATGGCAATGCAGATTACACAGTAAGCAACCAATCGATTAAACACAGGATATGACATCATGGAACACCCTGCTTCTTCGCTTCTAGAAACTTTTTAAAAACACAAATTAACAAACTTAGTTGTGCCCATCCATCCTTTAAAAAATAATTTCATCTTGGTATGTAAAGCGTCTTTTGCATAAAGCCTGTGccataaaaatatatttacatacaacACCACTCTCCTAAGTCGGGTCTACTCTGGAGCACATTAAACATCTGATTCTCTGTGCAAGCTGCAAGTCATCAACACCAGGTTGTATATCATGGGACTGACAGGTATAGTTGCTATGGTTGGTCAGTGGTGGTGTACCGTATATCCTCTGTAGGCTGGGTTTACAGTCTGCTAGCTCACTCAGGGACTATACTGAAGGCCCTTGCTCATTCAGTCTATAGGATCcatagagtcagagagagagagagggagactgatgATTAGGGATCACCCTGTCCAACTTTGGCCCAGTAGCTCTGCTCCTTTACAAGTATTTTGGCCAAAACGCAATAGTTTCCCACAGCTTCTCATGTCTCTAGGGGGAAGAGATATGTGTAGCTCTTCATGGTTGATACTGTAATAGTCTGAAGTCTGCCTCAGTCTCCGGTCCCCCTCATCTTGGTCTACAGAGTGGTCCCAtagctcctccccctttctctaggggtcagaggttaaagATCGGTGACTTTGTTCTCGAGGGCGGCGGCTATCTGCTGCAGCCGCAGGGTCAGCTGTTTACTCTGGGCGGCTGGG

Function

NR:

description
hypothetical protein cypCar_00040112, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1510529 False 1707 lncRNA 0.41 2 71060260 71062055
TU1510530 True 1836 lncRNA 0.41 2 71060260 71062184

Neighbor

gene id symbol gene type direction distance location
LOC118938899 NA coding downstream 165449 70893229 ~ 70894811 (-)
LOC110516361 LOC106576597 coding downstream 199928 70791034 ~ 70860332 (-)
LOC110490694 LOC106576596 coding downstream 272524 70781695 ~ 70787736 (-)
LOC118938960 NA coding downstream 282831 70776831 ~ 70848012 (-)
LOC110490643 LOC106596479 coding downstream 284092 70762977 ~ 70776821 (-)
LOC118936537 LOC106594938 coding upstream 111786 71173970 ~ 71198905 (-)
LOC110490709 LOC106609674 coding upstream 137336 71199520 ~ 71237895 (-)
LOC118938839 NA coding upstream 139064 71201248 ~ 71201989 (-)
LOC110490706 LOC106576521 coding upstream 139077 71201261 ~ 71214069 (-)
LOC110490707 LOC106576520 coding upstream 166684 71228868 ~ 71232129 (-)
G1323206 NA non-coding downstream 46757 71013303 ~ 71013503 (-)
G1323205 NA non-coding downstream 64465 70995390 ~ 70995795 (-)
G1323167 NA non-coding downstream 136884 70922735 ~ 70923376 (-)
G1323151 NA non-coding downstream 162208 70897401 ~ 70898052 (-)
G1323138 NA non-coding downstream 182658 70876798 ~ 70877602 (-)
G1323235 NA non-coding upstream 3641 71065825 ~ 71066300 (-)
G1323238 NA non-coding upstream 52250 71114434 ~ 71116548 (-)
G1323248 NA non-coding upstream 83421 71145605 ~ 71146142 (-)
G1323298 NA non-coding upstream 153868 71216052 ~ 71221279 (-)
G1323207 NA other downstream 20738 71025251 ~ 71039522 (-)
LOC110490645 LOC106576589 other downstream 515040 70543356 ~ 70547418 (-)
G1323036 NA other downstream 523121 70536452 ~ 70537139 (-)
G1322348 NA other downstream 1160557 69897748 ~ 69899703 (-)
G1321997 NA other downstream 1497220 69562310 ~ 69563040 (-)
G1323296 LOC106609674 other upstream 140316 71202500 ~ 71237846 (-)
LOC118938840 LOC106576579 other upstream 795099 71841725 ~ 71923263 (-)
LOC110500989 LOC106576674 other upstream 985780 72022817 ~ 72150996 (-)
LOC110490626 LOC106576575 other upstream 1102449 72162661 ~ 72192809 (-)
G1324464 typh other upstream 1178364 72240548 ~ 72260352 (-)

Expression


Co-expression Network