Item | Value |
---|---|
gene id | XLOC_003217 |
gene name | NA |
gene type | non-coding |
species | zebrafish (Danio rerio) |
category of species | model fish |
Item | Value |
---|---|
chromosome id | NC_007122.7 |
NCBI id | CM002895.2 |
chromosome length | 45484837 |
location | 7149071 ~ 7152007 (+) |
genome version | GRCz11_2017_zebrafish_Genome |
id | name | namespace |
---|---|---|
GO:0044085 | cellular component biogenesis | biological_process |
GO:0016070 | RNA metabolic process | biological_process |
GO:0016072 | rRNA metabolic process | biological_process |
GO:0022613 | ribonucleoprotein complex biogenesis | biological_process |
GO:0008152 | metabolic process | biological_process |
GO:0034470 | ncRNA processing | biological_process |
GO:0006364 | rRNA processing | biological_process |
GO:0090304 | nucleic acid metabolic process | biological_process |
GO:0006396 | RNA processing | biological_process |
GO:0006139 | nucleobase-containing compound metabolic process | biological_process |
GO:0006725 | cellular aromatic compound metabolic process | biological_process |
GO:0000154 | rRNA modification | biological_process |
GO:1901360 | organic cyclic compound metabolic process | biological_process |
GO:0010467 | gene expression | biological_process |
GO:0044237 | cellular metabolic process | biological_process |
GO:0044238 | primary metabolic process | biological_process |
GO:0042254 | ribosome biogenesis | biological_process |
GO:0044260 | cellular macromolecule metabolic process | biological_process |
GO:0000470 | maturation of LSU-rRNA | biological_process |
GO:0042273 | ribosomal large subunit biogenesis | biological_process |
GO:0071704 | organic substance metabolic process | biological_process |
GO:0043170 | macromolecule metabolic process | biological_process |
GO:0006807 | nitrogen compound metabolic process | biological_process |
GO:0034641 | cellular nitrogen compound metabolic process | biological_process |
GO:0034660 | ncRNA metabolic process | biological_process |
GO:0046483 | heterocycle metabolic process | biological_process |
GO:0044424 | obsolete intracellular part | cellular_component |
GO:0044428 | obsolete nuclear part | cellular_component |
GO:0070013 | intracellular organelle lumen | cellular_component |
GO:0044452 | obsolete nucleolar part | cellular_component |
GO:0005622 | intracellular anatomical structure | cellular_component |
GO:0005634 | nucleus | cellular_component |
GO:0031428 | box C/D snoRNP complex | cellular_component |
GO:0031974 | membrane-enclosed lumen | cellular_component |
GO:0031981 | nuclear lumen | cellular_component |
GO:0043226 | organelle | cellular_component |
GO:0043227 | membrane-bounded organelle | cellular_component |
GO:0043229 | intracellular organelle | cellular_component |
GO:0043231 | intracellular membrane-bounded organelle | cellular_component |
GO:0043233 | organelle lumen | cellular_component |
GO:0005730 | nucleolus | cellular_component |
GO:0005732 | small nucleolar ribonucleoprotein complex | cellular_component |
GO:0003676 | nucleic acid binding | molecular_function |
GO:0097159 | organic cyclic compound binding | molecular_function |
GO:1901363 | heterocyclic compound binding | molecular_function |
GO:0003723 | RNA binding | molecular_function |
ensembl_id | ENSDARG00000080372 ENSDARG00000081946 ENSDARG00000083266 ENSDARG00000097452 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TCONS_00006338 | False | 1783 | lncRNA | 0.33 | 6 | 7149071 | 7152007 |
TCONS_00008534 | False | 1596 | lncRNA | 0.34 | 5 | 7149188 | 7152007 |
TCONS_00008535 | False | 1422 | lncRNA | 0.34 | 4 | 7149292 | 7152007 |
TCONS_00008536 | False | 1442 | lncRNA | 0.34 | 5 | 7149342 | 7152007 |
TCONS_00008537 | False | 1745 | lncRNA | 0.34 | 3 | 7149445 | 7152007 |
TCONS_00008538 | False | 1283 | lncRNA | 0.34 | 5 | 7149497 | 7152007 |
TCONS_00008539 | False | 1555 | lncRNA | 0.35 | 5 | 7149504 | 7152007 |
TCONS_00008540 | False | 1274 | lncRNA | 0.33 | 5 | 7149529 | 7152007 |
TCONS_00008541 | False | 1651 | lncRNA | 0.35 | 5 | 7149532 | 7152007 |
TCONS_00008387 | False | 349 | lncRNA | 0.41 | 4 | 7149543 | 7150706 |
TCONS_00008542 | False | 1425 | lncRNA | 0.34 | 5 | 7149606 | 7152007 |
TCONS_00008544 | False | 1729 | lncRNA | 0.34 | 4 | 7149669 | 7152007 |
TCONS_00008543 | False | 1384 | lncRNA | 0.33 | 3 | 7149669 | 7152007 |
TCONS_00008545 | False | 1494 | lncRNA | 0.34 | 5 | 7149699 | 7152007 |
TCONS_00006339 | False | 635 | lncRNA | 0.40 | 4 | 7149896 | 7151151 |
TCONS_00006340 | False | 94 | snoRNA | 0.38 | 1 | 7149989 | 7150082 |
TCONS_00006341 | False | 93 | snoRNA | 0.41 | 1 | 7150274 | 7150366 |
TCONS_00006342 | True | 94 | snoRNA | 0.43 | 1 | 7150547 | 7150640 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
XLOC_003216 | CR925817.1 | coding | upstream | 45535 | 7095176 ~ 7103536 (+) |
XLOC_003214 | crtc1b | coding | upstream | 191029 | 6902306 ~ 6958042 (+) |
XLOC_003215 | FQ976909.1 | coding | upstream | 192692 | 6946591 ~ 6956379 (+) |
XLOC_003213 | klhl26 | coding | upstream | 253090 | 6881001 ~ 6895981 (+) |
XLOC_003212 | BX936438.2 | coding | upstream | 286703 | 6862252 ~ 6862368 (+) |
XLOC_003219 | tmem38a | coding | downstream | 6716 | 7158723 ~ 7179516 (+) |
XLOC_003220 | thop1 | coding | downstream | 31018 | 7183025 ~ 7212097 (+) |
XLOC_003221 | nwd1 | coding | downstream | 62346 | 7214353 ~ 7246987 (+) |
XLOC_003222 | reep6 | coding | downstream | 109974 | 7261981 ~ 7274378 (+) |
XLOC_003223 | si:ch73-238c9.1 | coding | downstream | 124817 | 7276824 ~ 7280259 (+) |
XLOC_003250 | BX324177.11 | misc | downstream | 4193796 | 11345803 ~ 11346099 (+) |
XLOC_003255 | BX324177.14 | misc | downstream | 4220879 | 11372886 ~ 11373182 (+) |
XLOC_003257 | BX324177.13 | misc | downstream | 4234355 | 11386362 ~ 11386658 (+) |
XLOC_003260 | BX324177.2 | misc | downstream | 4266026 | 11418033 ~ 11418323 (+) |
XLOC_003262 | BX324177.15 | misc | downstream | 4277386 | 11429393 ~ 11429689 (+) |
XLOC_003210 | NA | non-coding | upstream | 333066 | 6808096 ~ 6816005 (+) |
XLOC_003208 | CR381534.1 | non-coding | upstream | 470862 | 6658656 ~ 6678209 (+) |
XLOC_003224 | NA | non-coding | downstream | 129232 | 7281239 ~ 7286310 (+) |
XLOC_003227 | CR450813.2 | non-coding | downstream | 630507 | 7782514 ~ 7783314 (+) |
XLOC_003228 | NA | non-coding | downstream | 673346 | 7825353 ~ 7826072 (+) |
XLOC_003229 | NA | non-coding | downstream | 728135 | 7880142 ~ 7971030 (+) |
XLOC_003234 | CR847563.1 | non-coding | downstream | 1426047 | 8578054 ~ 8580557 (+) |