XLOC_032170 (negr1)


Basic Information

Item Value
gene id XLOC_032170
gene name negr1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 36942966 ~ 37164417 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062860
ACTAGATGGTGTGCAAGCCACTGGAGAGTCGACTTCCTCCCGCGGTCAGGTTCCGATCAAAACAAATCTGGAAAACTACACGGAACGCCATTTCTCGGGGTCTTCGCGGAGGATTAATATATTTTCATccagatatttatatttttatttttgataacgGCGCGGATCGTACTCCACTCGGCGGTGATGGACATAATGATTGCAGTGCAGGATGCGTGCGTCTCCGGTCAGTGGCTCACCGCTATAATTCTTAGTCTTTGCTGCTTTTTACCGTCGTGTTTGCCCGCTGGACAAACTGTGGACTATACTACGTCCAGCGAGAGTGTGGTCAGCAGACAGGGAGACACCGCGCTGCTCAGATGCTACCTGTTGGATGGGATCTCAAAAGGAGCATGGTTGAACCGTTCCAGTATCATTTACGCAGGGAATGACAAGTGGTCAGGGGATCCTCGTGTGTCCATTGTATCAAACGTGGGGGATAAACATGAATACAGCTTACAGATACAGAAAGTGGATGTAACGGACGAGGGCGTCTACACCTGCTCAATACAGAGCGAACGTAATCTACATCCAAAGCTCATTCAGTTAATTGTAAAAGTTCCCCCCAAAATCTATGACATTTCATCGGACATTACGGTAAACGAAGGCAGCAACGTTTCACTCATCTGCGCAGCCAGTGGGAAACCAGAGCCCAAAATCTCTTGGAGACACATCAGCCCTTCAGCCAGGAAGTATGAAAGCGGGGAGTATTTAAATATCACAGGCATCTCTCGGGATCAAGCAGGAGACTATGAGTGCGGAGCTGAAAACGACATTGCTTCACCTGATACCAAAACTGTGAGAGTCACAGTCAACTTTCCTCCAGCAATCCATGAGATGAAAAGTCACGGGGTCCGACCCGGTCAGGTTGCCCTGCTGAGATGTGAAGCAGCAGCTGTCCCTTCTCCAGTTTTCGAGTGGTACAAGGgagaaaaaagGATCAACATGGGCCAAGGAATCGTCATCAATAACCTCAGCTCCAGATCGGTTCTCACAGTGAAGAACATGACACAGGACCGCTATGGCAACTACACCTGTGTGGCTGTCAACAGGTTGGGAACAGCCAACGCCAGTGTGCCTCTGAATCCATCCAACCCCGCTATGTATGGAAGTACAGGAGGCGCTGAAGTCCTGCTGGCCTGCTGGTACCTGATCCTGGCTCTCTCTTCTCTCGTCACCGTTTACTAGCCCTGGGGACGGCCATACACAATGACTGTAAAGAACCCTTTTGAGCATTTACAGATCCTTTGACATTGCTGATGGCTGGATCCAATCTGGTACAGTGTGTTTGGAAAGCGGCGAGGGATTTTAATCAGCATTGCTTATGTTGGGATGGTAATTTTCTTCTGTGGTATATGTCATCATGTAAATACATGCGGTTATAGGGGTTTTGTTTTCCGTTCTTctcttatttccttttttttttgtgtgtgtgaatcagcACACATTGTCCCCCTTTCGAACGCTCTCAAATTAGCTGAAATCACACTTTGGGAAAGCGAGGGTGTGTGACATTAGTGTCTTTGTTAGTGGAAAAGAAGAGACCGCCCTAGTGTGCCACCTTGCTCTCCATCCTGGTACATCATTCACGTACTTATAAAGCGCGAAAGGGGTTTGAATAACATGCTTTTTAGACTGTGCTCATTAAAATCCATTGAACCAGGATACACTGTTTAAGATTTCACAAAGGGAGAGATATTGAAATTGATATCAGACGTAATACAGTCAAAGGTGAAGCGAACAATTGAAGAGCAGCTTTAGTTTAATAcgctacagtaaaaaaaaaagaaatgattattcattttttttggacCAAATCTACAGCCATACCTCAATGATTTGAAACTCTAGGCTATAGACTCCAATTATGCAGAGGAAGATGGTACGCCTTTCTAGGCTGATTTAATTGCTTGTACAATCCTAGGTTGTACTCTGGATATGTAAAACTATGAGGCAAACTGACATTCTGTAACGTTATTTGTGACTGATGCAGTGGGTAAAAGGTTATAAAACAACAAAGCGGAGTCACAAAGCCGTTCCTTTTGCCCTGGAGGTCTTTAAAACGAGAGCTATATTGTGGAATACAAAAGAATAGGGAAATATTTAGTGTTGCGTTTGATGTTATATTGAAGAagatatgaaataataatagcaCATAAAGGCATTATGCAGTTGGCAgcgtgaataataataatgtaacagGCAAATCCAAAGTCCAAAGTTGAGGGAAGACAGCCAGAACTGGCTCATATTTCATTTCAAATGACGAAATTATGGACAGTGTCTAATGGTACTTATCTGACGATCCTCCATATCATTTGTTTTCCTTCATTTTATAGATTATGCTGTATGGTTGTGATCATTTGAACTGGATTTTATAATGTATTAACATATTACCTGCTTTGCTTCTGTCAGTGTGAAATAGTTTCGAAC

Function

symbol description
negr1 Enables identical protein binding activity. Is expressed in head. Orthologous to human NEGR1 (neuronal growth regulator 1).

GO:

id name namespace
GO:0005515 protein binding molecular_function
GO:0042802 identical protein binding molecular_function

KEGG:

id description
ko04514 Cell adhesion molecules
ko04515 Cell adhesion molecules

ZFIN:

id description
ZDB-GENE-040822-27 Enables identical protein binding activity. Is expressed in head. Orthologous to human NEGR1 (neuronal growth regulator 1).

Ensembl:

ensembl_id ENSDARG00000021607

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062860 True 2472 mRNA 0.44 7 36942966 37164417

Neighbor

gene id symbol gene type direction distance location
XLOC_032169 traf3ip2l coding upstream 41836 36877968 ~ 36901130 (+)
XLOC_032168 chd1l coding upstream 65379 36844127 ~ 36877587 (+)
XLOC_032167 sft2d2a coding upstream 98946 36839509 ~ 36844020 (+)
XLOC_032166 tmem45a coding upstream 105430 36821621 ~ 36837536 (+)
XLOC_032165 si:ch73-29l19.1 coding upstream 123597 36795225 ~ 36819369 (+)
XLOC_032172 NA coding downstream 19776 37184193 ~ 37250364 (+)
XLOC_032173 zranb2 coding downstream 136924 37301341 ~ 37307487 (+)
XLOC_032174 ptger3 coding downstream 144299 37308716 ~ 37311049 (+)
XLOC_032175 NA coding downstream 149920 37314337 ~ 37315909 (+)
XLOC_032176 BX324166.1 coding downstream 170142 37334559 ~ 37334963 (+)
XLOC_032164 NA non-coding upstream 228344 36714359 ~ 36714622 (+)
XLOC_032162 BX950188.1 non-coding upstream 324468 36465347 ~ 36618498 (+)
XLOC_032163 BX950188.2 non-coding upstream 431036 36511812 ~ 36511930 (+)
XLOC_032160 NA non-coding upstream 527880 36414723 ~ 36415086 (+)
XLOC_032158 BX936433.1 non-coding upstream 657855 36281005 ~ 36285111 (+)
XLOC_032178 NA non-coding downstream 305699 37470116 ~ 37476101 (+)
XLOC_032184 AL935047.1 non-coding downstream 923078 38087495 ~ 38087611 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_07794457_07834047 NA coding CI01000340 null 7793768 ~ 7835726 (+)