G1322816 (LOC106594938)


Basic Information

Item Value
gene id G1322816
gene name LOC106594938
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 71175465 ~ 71179032 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1510047
TAATGACTTTCAGCTACAGTGACTGTAATGACTTTCAGCTACAGTGACTGTAATGACTTTCAGCTACAGTGACTGTAATGACTTTCAGCTACAGTGACTGTAATGACTTTCAGCTACAGTGACTGTAATGACTTTCAGCTACAGTGACTGTAATGACTTTCAGCTACAGTGACTGTAATGACTTTCAGCTACAGTGACTGTAATGACTTTCAGCTACAGTGACTGTAATGACTTTCAGCTACAGTGACTGTAATGACTTTCAGCTACAGTGACTGTAATGACTTTCAGCTGAAATGTGTTGAACTGTGTATCTTCCCAACTTAAAGCTGAACTTATTCGGTCAGCTGAAACATAATTCCCTTCACCCTTCCAAACATTCTTTCCATTTTACCTTTTTCActcaacctttctctctctctctactccccctttCTTTTCCCAGCTACACTAAGCTACtatcgctctctctgtctatcatctcctctctctctctctctctcagcactctctcagcactctctctctctctctctctctctcagccctctcagccctctctcagccctctctctctctttctctctctctcaaccccctcttttctctctccactctcagTCTTCAGTCTGGGGAGGAAGAGGTGTAACAGCCCTGGCCAGCACCCAACTTCCCTCCACAAACAAGACCTCTACAACCAACCCATTAACCCCTCCCACTAACTCACGTCTATCTACCCCTTGTTTTTTCAGTATTTCTCTTTCTAAAACAACGACAGTTCATTTACATATGGCCTACACATGAGCTAGTCCTGTAGACTGGAGGGCTTGTAGCCACAACTCTGTGAATCAACTTAAGTTTTGACTACACGTCTCTACCCTTCTGTTCTTTCAGTCGTTCTGTCTTTCAGTCCCATTTCTAAAACAACGACAGTTCTACTGTGAAACCAAATGGTTACGAACATGAACAAGTCCTAGTTGTTTCGACTCGGGAGACTGCGTGGTCACAGCTCTGTGAATCGCCTCCCTATAGCTGTGTCTCATGTGGTGAGTTTGGTTGGTTATCTATCTGTTCCTCCATAAACCTTCAGGAAATACAGTACATGATAACATAGCACTAATAAAGGCACTTCCTGTGGACGGCCCATACAGTAGACGTATATCAATACACACGGTTTGCTCTTCAACCTTCCCACTGTGATACTGAACAATAGATGTCCTGCTAGATTAGGACCAATATCAAGTATGGCATTCATGTCAATTCAATCAAGCAATACTATTATACAGTACCATTCCTTGAAGGGTACATACACCTCAGTACGTCTTGAAATTACCAAAACACACAGGCAATATATGTCTGTTTCAACAATATAAATAGATAACACACGGTTATCATTAGGTTGAGATAACATGAACAGTAGTCCTAACTGTCTATTACATTGAGATAACATGAACAGTAGTCCTAACTGTCTATTACATTGAGAGTAGTCCTGACTGTCCATTATATTGAGATAACATGAACAGTAGTCCTAACTGTCCATTACATTGAGATAACATGAACAGTAGTCCTAACTGTCTATTACATTGAGATAACATGAACAGTAGTCCTAACTGTCTGTTACATTGAGACAACATGAACAGTAGTCCTAACTGTCCATTACATTGAGATAACATGAACAGTAGTCCTAACTGTCTATTACATTGAGATAACATGAACAGTAGTCCTAACTGTCTGTTACATTGAGATAACATGAACAGTAGTCCTGACTGTCCATTACATTGAGATAACATGAACAGTAGTCCTGACTGTCTATTACATTGAGATAACATGAACAGTAGTCCTAACTGTCTGTTACATTGAGATAACATGAACAGTAGTCCTAACTGTCTACTACATTGAGCTTCACCACAGCATGGTTTGTGACTCTGAATGACATACAACACAATACTTATTTAGCTCTATTGAACATATAAAGATGTACAGCAGCACTGTCTCTGAGAGGGTAGATTCAGTACATTAAGGTGGCTGGGATGCCCAGTTCACAACACACCTGGCCAGTCCTAACCCAGAAATGAAGGTTCAAGTGTGTGTCTGTCCTTCCCATGTCCCTTCCCTTCCAAACTCCCAACTCCACCTCCTCTAGGTCAGATTGCTGCTGATGTCCAGGGTGTGTTGGTAGACCTGGGTCACATCATCCATGTCCCCTAGCAGAGAGAAGCTGCCGTCGTCACCAGGAGACCCTGGTGTCCCTCGGGTCCCCACCTTCCCCCCATGGAGCCCCCCTGCAGCCGTCTGGAGGCCCCGTCTGAAGCCTGCCAGCTGGAGTAGATCCTCAGCCGACATACAGGCCCTGACGTGTGGCTGCGGGGACGAGGGAGACCAATCCATTCCCATTAAGGGGGGAACACTGGAGAGACCCATCTCCTCACAGACAATACTGGAGGGTTTACTCTGGCTGCGAGAGAGGCCCGAGTCCCCCGGAGTCTCTCCGTGGTAGCTCATATTGGACAAGCCACTGTGGAAGGAAGTGGAGTTGCCGTACTTCCCATTACGCTTCAATATGCCCTTTCTCCCCATGGACCTCTTTGTTGGTGAGCTGGCGGGTGGGGCCATGGAGGTGCTGCCCCCTAGCAGTTCAGAGGACTCACTGCGCTCCGGGGAGGAGTAGTAGCCAGACTCCCGCTGCTGGTTGTTCTTCAGGATGCCCTTCTTGGGGAGGGTGGGCACCATCTTGGCCGGCGAGACCCCCAGGCGATCCTGATCATcgtcctcttcctcatctctctcggGGCTGGAGAGCAGCTCCCTTCCCTCGTGGAAGTGCAGGGAGCGACTCAGCTCGATCTCCCCCAGGCTGTGGGACCTCTGCTCAGACACATGCATCTTCAGGATCCCCTTGGGTCTCTTCAGTCCTGGTTTGTCTTTGTCTTCCCACGCGGTGTGATGGTGGAGCGCTCCGCTATCATTCTCCTTCCTGGACTTCCTCAGGCGCTGGCGGCCAGCGTGGGGGGGTACGGCAGGGTGTTCCGAGCGGGGGGGCTTGACCGGCACCACCCTGGGTGACTCTGTGGTGCGGTTCTGCCAATCGATAAAGCGTGCTAGCGTTGGAGAAGAGATGCAGccactgttgtccttctggacgtcacagtcacacacagtggTCTTCCAGCCCCAATTGACCCACCAGTGGTTGGCGATGTCTTCCACCGTGGCTCGACGCTCCGGGTTAACCATCAACATCC

Function

NR:

description
NUAK family SNF1-like kinase 1, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1510047 True 3239 lncRNA 0.48 3 71175465 71179032

Neighbor

gene id symbol gene type direction distance location
LOC110490701 LOC106609709 coding upstream 17402 71157041 ~ 71158063 (+)
LOC110490812 LOC106576598 coding upstream 113410 70877144 ~ 71062055 (+)
LOC118938837 LOC106576594 coding upstream 521582 70649032 ~ 70653883 (+)
LOC110490670 NA coding upstream 605741 70565742 ~ 70569724 (+)
LOC110490651 apex1 coding upstream 624936 70547485 ~ 70550529 (+)
LOC110490712 nel coding downstream 116393 71295425 ~ 71400412 (+)
LOC110499746 LOC106609793 coding downstream 279775 71458807 ~ 71475849 (+)
LOC110499745 LOC106576507 coding downstream 299437 71478469 ~ 71488470 (+)
LOC110499701 LOC106576510 coding downstream 451260 71630292 ~ 71685611 (+)
LOC110490715 zcrb1 coding downstream 555427 71734459 ~ 71737191 (+)
G1322814 NA non-coding upstream 56991 71117047 ~ 71118474 (+)
G1322807 NA non-coding upstream 72877 71102353 ~ 71102588 (+)
G1322805 NA non-coding upstream 105295 71069525 ~ 71070170 (+)
G1322804 NA non-coding upstream 106786 71068455 ~ 71068679 (+)
G1322833 NA non-coding downstream 15401 71194433 ~ 71194666 (+)
G1322836 LOC106609682 non-coding downstream 18999 71198031 ~ 71198872 (+)
G1322837 NA non-coding downstream 20086 71199118 ~ 71199401 (+)
G1323265 NA non-coding downstream 22047 71201079 ~ 71236285 (+)
G1323267 NA non-coding downstream 37199 71216231 ~ 71221307 (+)
G1322763 NA other upstream 238320 70936225 ~ 70937145 (+)
G1322725 NA other upstream 327521 70843945 ~ 70847944 (+)
G1322161 NA other upstream 1271807 69900944 ~ 69903658 (+)
G1322119 NA other upstream 1375603 69798196 ~ 69799862 (+)
G1321053 NA other upstream 2379484 68794598 ~ 68795981 (+)
G1323962 NA other downstream 1011391 72190423 ~ 72191163 (+)
LOC110531894 LOC106598741 other downstream 1277185 72416050 ~ 72481441 (+)
LOC110490361 LOC106609821 other downstream 1563181 72742193 ~ 72850175 (+)
G1324156 LOC106576365 other downstream 1674534 72853566 ~ 72856022 (+)
G1324195 NA other downstream 1681788 72860820 ~ 72865809 (+)

Expression


Co-expression Network