G1322836 (LOC106609682)


Basic Information

Item Value
gene id G1322836
gene name LOC106609682
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 71198031 ~ 71198872 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1510075
TCACTTGTTGTAACACACCAAGTTCCAACTGTCACACACGTTTCATTGGCGATTAGTCGTCGTCTAAAACTCACCACTTTGCCGGATTGTCTCTCGATGGCTTTCTTCACTTTGCCGTATGTCCCTTTCCCCAGTGTCTCCAGCAGTTCGTAGCGGTGCTTCAGGTTGTGCTTGTGGTGATGTTTCTTCACGCTAGAGTTAGACCATCTCCCGTCATCCAGGATCGAGATGTCACCAAGGTAGTCGACAGGTAAAGGTCTGTCCCCCCAAATCTGCACATCGCTCTGTCCTACCTCAGTCCCTGCGCTGGACGTGGACACATTGGACACGTTAGATGCCGTGGACACATTGGATAGCCGACGAGCTTTTGAAGCAGTTTCCATCAGGATAACTAATAAAGTGTCAATATGATCAAATCCGAGTGGACCTAATGACGGCTATCCGTGCTTTAATGTATGTGTCCTTGGAAATACACCTCTAAATACATACAAATATTTGTGTTTTGATGAAAAGTAAATGATTCAATTATTGGAGCAAAATCTCTTATTCCTCAATTGTAAAGACGTTGCTACTGTGCTCCGTTCTCGTCTCTCCCTTATGGTAATCCAGTTGATGCTCTAATGGTAGCAAAATGAGATCAACCGGGCGTTTTGGAATTGTTGGATACAGCTTCGCATTCATTCTCTATCAGAACCATGTGCGTAATTGCTCTCTCCGATGTTGCGCTTGTCTTGAGAGCGACGATCCGCGCCTAGGTCATAGCTGTGGATGCGATGTATTCGAGTGTGACACACAAAGCTGTTCGGGTTTGTACCATTCTCATCGGCTCTCTTTCATACGCC
>TU1510072
CACTTTGCCGGATTGTCTCTCGATGGCTTTCTTCACTTTGCCGTATGTCCCTTTCCCCAGTGTCTCCAGCAGTTCGTAGCGGTGCTTCAGGTTGTGCTTGTGGTGATGTTTCTTCACGCTAGAGTTAGACCATCTCCCGTCATCCAGGATCGAGATGTCACCAAGGTAGTCGACAGGTAAAGGTCTGTCCCCCCAAATCTGCACATCGCTCTGTCCTACCTCAGTCCCTGCGCTGGACGTGGACACATTGGACACGTTAGATGCCGTGGACACATTGGATAGCCGACGAGCTTTTGAAGCAGTTTCCATCAGGATAACTAATAAAGTGTCAATATGATCAAATCCGAGTGGACCTAATGACGGCTATCCGTGCTTTAATGTATGTGTCCTTGGAAATACACCTCTAAATACATACAAATATTTGTGTTTTGATGAAAAGTAAATGATTCAATTATTGGAGCAAAATCTCTTATTCCTCAATTGTAAAGACGTTGCTACTGTGCTCCGTTCTCGTCTCTCCCTTATGGTAATCCAGTTGATGCTCTAATGGTAGCAAAATGAGATCAACCGGGCGTTTTGGAATTGTTGGATACAGCTTCGCATTCATTCTCTATCAGAACCATGTGCGTAATTGCTCTCTCCGATGTTGCGCTTGTCTTGAGAGCGACGATCCGCGCCTAGGTCATAGCTGTGGATGCGATGTATTCGAGTGTGACACACAAAGCTGTTCGGGTTTGTACCATTCTCATCGGCTCTCTTTCATACGCC
>TU1510076
CACTTTGCCGGATTGTCTCTCGATGGCTTTCTTCACTTTGCCGTATGTCCCTTTCCCCAGTGTCTCCAGCAGTTCGTAGCGGTGCTTCAGGTTGTGCTTGTGGTGATGTTTCTTCACGCTAGAGTTAGACCATCTCCCGTCATCCAGGATCGAGATGTCACCAAGGTAGTCGACAGGTAAAGGTCTGTCCCCCCAAATCTGCACATCGCTCTGTCCTACCTCAGTCCCTGCGCTGGACGTGGACACATTGGACACGTTAGATGCCGTGGACACATTGGATAGCCGACGAGCTTTTGAAGCAGTTTCCATCAGGATAACTAATAAAGTGTCAATATGATCAAATCCGAGTGGACCTAATGACGGCTATCCGTGCTTTAATGTATGTGTCCTTGGAAATACACCTCTAAATACATACAAATATTTGTGTTTTGATGAAAAGTAAATGATTCAATTATTGGAGCAAAATCTCTTATTCCTCAATTGTAAAGACGTTGCTACTGTGCTCCGTTCTCGTCTCTCCCTTATGGTAATCCAGTTGATGCTCTAATGGTAGCAAAATGAGATCAACCGGGCGTTTTGGAATTGTTGGATACAGCTTCGCATTCATTCTCTATCAGAACCATGTGCGTAATTGCTCTCTCCGATGTTGCGCTTGTCTTGAGAGCGACGATCCGCGCCTAGGTCATAGCTGTGGATGCGATGTATTCGAGTGTGACACACAAA

Function

NR:

description
serine/threonine-protein kinase ppk5-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1510075 False 842 lncRNA 0.46 1 71198031 71198872
TU1510072 False 768 lncRNA 0.46 1 71198105 71198872
TU1510076 True 723 lncRNA 0.46 1 71198105 71198827

Neighbor

gene id symbol gene type direction distance location
LOC110490701 LOC106609709 coding upstream 39968 71157041 ~ 71158063 (+)
LOC110490812 LOC106576598 coding upstream 135976 70877144 ~ 71062055 (+)
LOC118938837 LOC106576594 coding upstream 544148 70649032 ~ 70653883 (+)
LOC110490670 NA coding upstream 628307 70565742 ~ 70569724 (+)
LOC110490651 apex1 coding upstream 647502 70547485 ~ 70550529 (+)
LOC110490712 nel coding downstream 96553 71295425 ~ 71400412 (+)
LOC110499746 LOC106609793 coding downstream 259935 71458807 ~ 71475849 (+)
LOC110499745 LOC106576507 coding downstream 279597 71478469 ~ 71488470 (+)
LOC110499701 LOC106576510 coding downstream 431420 71630292 ~ 71685611 (+)
LOC110490715 zcrb1 coding downstream 535587 71734459 ~ 71737191 (+)
G1322833 NA non-coding upstream 3365 71194433 ~ 71194666 (+)
G1322816 LOC106594938 non-coding upstream 18999 71175465 ~ 71179032 (+)
G1322814 NA non-coding upstream 79557 71117047 ~ 71118474 (+)
G1322807 NA non-coding upstream 95443 71102353 ~ 71102588 (+)
G1322805 NA non-coding upstream 127861 71069525 ~ 71070170 (+)
G1322837 NA non-coding downstream 246 71199118 ~ 71199401 (+)
G1323265 NA non-coding downstream 2207 71201079 ~ 71236285 (+)
G1323267 NA non-coding downstream 17359 71216231 ~ 71221307 (+)
G1323276 NA non-coding downstream 40073 71238945 ~ 71239168 (+)
G1323287 NA non-coding downstream 68455 71267327 ~ 71267583 (+)
G1322763 NA other upstream 260886 70936225 ~ 70937145 (+)
G1322725 NA other upstream 350087 70843945 ~ 70847944 (+)
G1322161 NA other upstream 1294373 69900944 ~ 69903658 (+)
G1322119 NA other upstream 1398169 69798196 ~ 69799862 (+)
G1321053 NA other upstream 2402050 68794598 ~ 68795981 (+)
G1323962 NA other downstream 991551 72190423 ~ 72191163 (+)
LOC110531894 LOC106598741 other downstream 1257345 72416050 ~ 72481441 (+)
LOC110490361 LOC106609821 other downstream 1543341 72742193 ~ 72850175 (+)
G1324156 LOC106576365 other downstream 1654694 72853566 ~ 72856022 (+)
G1324195 NA other downstream 1661948 72860820 ~ 72865809 (+)

Expression


Co-expression Network