G1323265


Basic Information

Item Value
gene id G1323265
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 71201079 ~ 71236285 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1510570
CAGAGAGTAGCAGAGAACACTGTGGAGAGAAACAGCAGGTTACCAATAGAATAGATCAGAGACCAGAGGAACTTTAATCCTGAAGCATGGAGAGCAGGTCCCTAGGAGAGGTATCATCGTGTCGTCCTCCACCAACCAATAGATGTGAGTCCATGAACGTGTACTCAGAGTATTGTCCACATCCTGCCCTTTTATTCTCATCTTGTGACTAAACAGTTCTTTAAGATTTCCTCCTGTTTTCCTCCTTTGTGGATGTTTTTAACATGCGTCAGTAAGTTAGACTTGTgattgaagcttttcccacagtcaccacagctaaatggtttATCTTCTGTGTGAGTCAGTTCATGCTTCTTCAGGTTCCCCTTCAAattgaagcttttcccacagtcaccacatATAAaaagtttctctcctgtgtgagtccgtATATGCCTACTTAGGTCCCCTCTCTGATagaagcttttcccacagtctcTACAGATAAattgtttctctcctgtgtgagtcagtcTATGCTTCCGTAGGGTCCCCTTCTGACTGAATCTTTTTCCGCAGTCAGCACAGCTAAATgctttctctcctgtgtgaatagGAATATGATCAGTAAGGTTCCCCTTGCGATTGAAGCGCTTCCCACAGTCTCCACAACTAAatgatttctcccctgtgtgaatccTCATGTGCTTGGACAGGTCTGCTTTGAGTTTGAAGGTCTTGCTACAAACAGGGCTGGTGCAGGGTTTCCTACCGCGACAGAGTCGGACATGGGCCGTCAGTTTACAGCTGGAGTTGTAGTGTTTTCTGCAGACGTGGCATTCGCTGGGTCTCTGCATGGCGAGAGTCACATGACTCTTCAGGTCAGCTTTCAGAGCAAACATTTCACCACAGTCACGGCAGTGGTGAGTTTTTCTAGACGTGGTGCTGGGTTTGAAACAGTGTTCCCCCATCGATGGGTTTGGATCCAATGATGGGCTGGGATTCAATCGTGGGCTGCTGTCAAGTCCTACTGGGTCGCTGCTTACGGCTG
>TU1510568
ATTCCTGCTGTGCCACAAAATCTGTAGAATTTCAGAAGTTCCCTACACATTCATTACCTATAACACATCTATGCACGTGACAAAATAATGCCATCTGCACTAATATTTTAGTCATCtgttaatctgactattctctcataGACTTCATTTACTTATTCCAGCtatgtgtgtctgagcgtgtACTCAGAATTGTCCACATCCTGACTTTTTATGTTCATCTTGTGACTAAATAGATCTTTGTCATAATGTTCTTTCTTTCAGTTTTAATCCTGTTTTCCTCCTTTGTGTATTTTTTTCACATGCGTCAGTAAGTTAGACTTTTGAGTGAAGCTTTTCCCGCAATCAtcacagctaaatggtttctctcctgtgtgagtgagTTTATGGTTTCTTAGGTTCCCCTTCTgattgaagcttttcccacagtcaccacagctaaatggtttctctcctgtgtgagtcagtcTATGCTTCTTTAGGGACCCGTTCTGATTAAAGCTTTTCCCACAGTTATCACAGCTAAATGGTTTCCCTCCTGTGTGAGTCCGTTTATGGTTCCGTAGGTTCCCCTCCTgattgaagcttttcccacattctccacagctaaatggtttctctcctgtgtgagtcagcATATGGCTCCTTAGGTTCCACTTATGAatgaagcttttcccacagtctcCACAGCTAAATGATTTATCTCCTGTGTGAGTCAGCATATGGTTCTTTAGGTTCCCCTTCAAattgaagcttttcccacagtctccacagctaaatggtttctctcccAGTCCTGTGTGAATCCTCATGTGCTTGGACAGATATCCTTTGAGTTTGAAGGTCTTGCCACAAACAGGGCAGGTGCAGGGTCTCCCACTGTGACAGAGGCGGATATGGGCCTTTAGTTTACAGGTGGAGGTGCAGCGTTTTCTGCAGAAACTGCATTCACGGAGTCTCTTCTTGTAGAGAGTCATATGCCTCTGCAGGGCAGCTTTCAGAGCAAACTTTTCACCACAGTCACGGCAGTGGTGAGTTTTTCTAGACGTGCTGGAACAATGTTCCGCCATCGATGGGCTGGGATCCAATCGCGGGCTGCTGTCAAGTCCTACGGGGTCACTGCTTACGGCTGAGCTGTGGCTGGAGGCATTGTTTTGATCCTCTGGAGGGTCACAGGGAATGTAGAGACCCTTAAGGTGGGTCACAGTAACAGAAGGTGTGAGATCCACTTGTTTAGgatcactctctctgttctccacagTCTGGGTTTGGGGAAGAGTCAAGGACTGAAATGGGTCCTCCTGATCACATTCATTTTTCACACAGGAAGGAGTGAATTTGAACTCTATGATATCAGCCTCCAGCCCTTGAAGCTGCTCTTCGTCCTGACTGGTCCTG

Function

NR:

description
gastrula zinc finger protein XlCGF57.1-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1510570 False 1030 lncRNA 0.47 2 71201079 71236019
TU1510568 True 1395 lncRNA 0.45 2 71228947 71236285

Neighbor

gene id symbol gene type direction distance location
LOC110490701 LOC106609709 coding upstream 43016 71157041 ~ 71158063 (+)
LOC110490812 LOC106576598 coding upstream 139024 70877144 ~ 71062055 (+)
LOC118938837 LOC106576594 coding upstream 547196 70649032 ~ 70653883 (+)
LOC110490670 NA coding upstream 631355 70565742 ~ 70569724 (+)
LOC110490651 apex1 coding upstream 650550 70547485 ~ 70550529 (+)
LOC110490712 nel coding downstream 59140 71295425 ~ 71400412 (+)
LOC110499746 LOC106609793 coding downstream 222522 71458807 ~ 71475849 (+)
LOC110499745 LOC106576507 coding downstream 242184 71478469 ~ 71488470 (+)
LOC110499701 LOC106576510 coding downstream 394007 71630292 ~ 71685611 (+)
LOC110490715 zcrb1 coding downstream 498174 71734459 ~ 71737191 (+)
G1322837 NA non-coding upstream 1678 71199118 ~ 71199401 (+)
G1322836 LOC106609682 non-coding upstream 2207 71198031 ~ 71198872 (+)
G1322833 NA non-coding upstream 6413 71194433 ~ 71194666 (+)
G1322816 LOC106594938 non-coding upstream 22047 71175465 ~ 71179032 (+)
G1322814 NA non-coding upstream 82605 71117047 ~ 71118474 (+)
G1323276 NA non-coding downstream 2660 71238945 ~ 71239168 (+)
G1323287 NA non-coding downstream 31042 71267327 ~ 71267583 (+)
G1323289 NA non-coding downstream 35961 71272246 ~ 71272587 (+)
G1323290 NA non-coding downstream 36756 71273041 ~ 71273274 (+)
G1323323 NA non-coding downstream 44725 71281010 ~ 71281499 (+)
G1322763 NA other upstream 263934 70936225 ~ 70937145 (+)
G1322725 NA other upstream 353135 70843945 ~ 70847944 (+)
G1322161 NA other upstream 1297421 69900944 ~ 69903658 (+)
G1322119 NA other upstream 1401217 69798196 ~ 69799862 (+)
G1321053 NA other upstream 2405098 68794598 ~ 68795981 (+)
G1323962 NA other downstream 954138 72190423 ~ 72191163 (+)
LOC110531894 LOC106598741 other downstream 1219932 72416050 ~ 72481441 (+)
LOC110490361 LOC106609821 other downstream 1505928 72742193 ~ 72850175 (+)
G1324156 LOC106576365 other downstream 1617281 72853566 ~ 72856022 (+)
G1324195 NA other downstream 1624535 72860820 ~ 72865809 (+)

Expression


Co-expression Network