Item | Value |
---|---|
gene id | XLOC_032172 |
gene name | NA |
gene type | non-coding |
species | zebrafish (Danio rerio) |
category of species | model fish |
Item | Value |
---|---|
chromosome id | NC_007117.7 |
NCBI id | CM002890.2 |
chromosome length | 60270059 |
location | 37184193 ~ 37250364 (+) |
genome version | GRCz11_2017_zebrafish_Genome |
id | name | namespace |
---|---|---|
GO:0072350 | tricarboxylic acid metabolic process | biological_process |
GO:0051146 | striated muscle cell differentiation | biological_process |
GO:0010927 | cellular component assembly involved in morphogenesis | biological_process |
GO:0055001 | muscle cell development | biological_process |
GO:0055002 | striated muscle cell development | biological_process |
GO:0006099 | tricarboxylic acid cycle | biological_process |
GO:0006101 | citrate metabolic process | biological_process |
GO:0009060 | aerobic respiration | biological_process |
GO:0031032 | actomyosin structure organization | biological_process |
GO:0030239 | myofibril assembly | biological_process |
GO:0003015 | heart process | biological_process |
GO:0061061 | muscle structure development | biological_process |
GO:0060537 | muscle tissue development | biological_process |
GO:0060538 | skeletal muscle organ development | biological_process |
GO:0014706 | striated muscle tissue development | biological_process |
GO:0060047 | heart contraction | biological_process |
GO:0045333 | cellular respiration | biological_process |
GO:0031012 | extracellular matrix | cellular_component |
GO:0062023 | collagen-containing extracellular matrix | cellular_component |
GO:0005198 | structural molecule activity | molecular_function |
GO:0005201 | extracellular matrix structural constituent | molecular_function |
ensembl_id | ENSDARG00000097259 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TCONS_00064894 | False | 1981 | lncRNA | 0.43 | 6 | 37184193 | 37247650 |
TCONS_00064895 | False | 1254 | lncRNA | 0.49 | 7 | 37184193 | 37250364 |
TCONS_00064896 | False | 1235 | lncRNA | 0.43 | 4 | 37184199 | 37217476 |
TCONS_00064897 | False | 1766 | lncRNA | 0.43 | 5 | 37184307 | 37247650 |
TCONS_00064898 | False | 1653 | lncRNA | 0.43 | 4 | 37184335 | 37247650 |
TCONS_00064899 | False | 825 | lncRNA | 0.50 | 4 | 37184335 | 37250364 |
TCONS_00064900 | False | 1158 | lncRNA | 0.42 | 5 | 37193820 | 37217476 |
TCONS_00064901 | False | 554 | lncRNA | 0.46 | 4 | 37193825 | 37216368 |
TCONS_00064902 | False | 1531 | lncRNA | 0.40 | 4 | 37193900 | 37247650 |
TCONS_00062862 | True | 524 | processed_transcript | 0.45 | 3 | 37193908 | 37216188 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
XLOC_032170 | negr1 | coding | upstream | 19776 | 36942966 ~ 37164417 (+) |
XLOC_032171 | BX950870.1 | coding | upstream | 193509 | 36990570 ~ 36990684 (+) |
XLOC_032169 | traf3ip2l | coding | upstream | 283063 | 36877968 ~ 36901130 (+) |
XLOC_032168 | chd1l | coding | upstream | 306606 | 36844127 ~ 36877587 (+) |
XLOC_032167 | sft2d2a | coding | upstream | 340173 | 36839509 ~ 36844020 (+) |
XLOC_032173 | zranb2 | coding | downstream | 50977 | 37301341 ~ 37307487 (+) |
XLOC_032174 | ptger3 | coding | downstream | 58352 | 37308716 ~ 37311049 (+) |
XLOC_032175 | NA | coding | downstream | 63973 | 37314337 ~ 37315909 (+) |
XLOC_032176 | BX324166.1 | coding | downstream | 84195 | 37334559 ~ 37334963 (+) |
XLOC_032177 | gtpbp6 | coding | downstream | 191425 | 37441789 ~ 37454910 (+) |
XLOC_032164 | NA | non-coding | upstream | 469571 | 36714359 ~ 36714622 (+) |
XLOC_032162 | BX950188.1 | non-coding | upstream | 565695 | 36465347 ~ 36618498 (+) |
XLOC_032163 | BX950188.2 | non-coding | upstream | 672263 | 36511812 ~ 36511930 (+) |
XLOC_032160 | NA | non-coding | upstream | 769107 | 36414723 ~ 36415086 (+) |
XLOC_032178 | NA | non-coding | downstream | 219752 | 37470116 ~ 37476101 (+) |
XLOC_032184 | AL935047.1 | non-coding | downstream | 837131 | 38087495 ~ 38087611 (+) |
XLOC_032185 | NA | non-coding | downstream | 1108317 | 38358681 ~ 38360443 (+) |