XLOC_032175


Basic Information

Item Value
gene id XLOC_032175
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 37314337 ~ 37315909 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064903
GCTTAACTAGCCGTTGTCTGCTTGGATAACTGCTGAATAGAGCAATGGAAAATAATATGATTGCATAAGATTGCTAATGCAGAGGcgacacggtagctcagtggttagcctcacagcaagaagatcactggcttgagccccggctgggcgtttgtgtggagtttgcatgttttcctcctctttgtgtgggtttcctctggataagttggaggttcattccgctgtggcgaccccagattaattaagggattaagcagagaagaaaatgaatgaataataagttTGCTTTTGTAGAGGCAACATGGTGgatcagtagttagcactgtcgcctcacagcaagaaggttgctggttccagtcCCGGCTAGGTTTGTGGgtatttttttttttttttttacatcaatgcCATGGAAGATCCATTTTTGGTCCTCCATAAAGTTTTTTCAGTGAGAATATTCataattatctttattattattattattatgtagaacCTATGAAATTTCCAAACGGAGGATTTCACTGAAGattttcaaggtttttttttttttttttttgtggttcccCAAAAGaactttgaaaatgaacatttcttTAAAGAACTATTTTTCCTAGACTAAAGAACATCTAATTGATCTAAATAACCTTCTGTGCACTAGAAAGACCTGTTAGGAACAAagatgtaccttttgaaaaggcactaTCCcaatgacagattttgtacctttatttctgagagtgcataaATTTAAAAGGTTCTTCAAGGAACCATAAATGAATCTTTACATTTAAGAGCGTAATGCTGTGCTGTGACACTGTAGTTATGTTGCCAACGCCATTTTATCTGAGTTCTTTCATATAGAAAGGTTTATACTCATATTATTATTCCGGAATAATGTACTCACCCTTATGAATCCATCTGGCTTCATCTCTGGAGAGCTTTCAGTGTTTTTTCTTAAAGCAACATAATAGTAAAAGCACATCGGTTCATCAAACAATGCAAATGTATGGCTTCAGAAGAAATATataattaatgcaaaaaataGCATGGGCTGCTTTTATGATGCTTTTGAGTACCCCGTGAGTGTTGAGTcacttttacaaaaaaatgtttattcattcacatTCCAAACAGTTTGTTTTATGTAGACCTGGAGGGGAAATTACCTGTAAATGTATAGCacaggagagagaaagaaagtcaTATTAGTTTGAAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064903 True 1216 lncRNA 0.36 2 37314337 37315909

Neighbor

gene id symbol gene type direction distance location
XLOC_032174 ptger3 coding upstream 3288 37308716 ~ 37311049 (+)
XLOC_032173 zranb2 coding upstream 6850 37301341 ~ 37307487 (+)
XLOC_032172 NA coding upstream 63973 37184193 ~ 37250364 (+)
XLOC_032170 negr1 coding upstream 149920 36942966 ~ 37164417 (+)
XLOC_032171 BX950870.1 coding upstream 323653 36990570 ~ 36990684 (+)
XLOC_032176 BX324166.1 coding downstream 18650 37334559 ~ 37334963 (+)
XLOC_032177 gtpbp6 coding downstream 125880 37441789 ~ 37454910 (+)
XLOC_032178 NA coding downstream 154207 37470116 ~ 37476101 (+)
XLOC_032179 slc9a7 coding downstream 213474 37529383 ~ 37600648 (+)
XLOC_032180 tubgcp5 coding downstream 307784 37623693 ~ 37652517 (+)
XLOC_032164 NA non-coding upstream 599715 36714359 ~ 36714622 (+)
XLOC_032162 BX950188.1 non-coding upstream 695839 36465347 ~ 36618498 (+)
XLOC_032184 AL935047.1 non-coding downstream 771586 38087495 ~ 38087611 (+)
XLOC_032185 NA non-coding downstream 1042772 38358681 ~ 38360443 (+)
XLOC_032186 CR405707.1 non-coding downstream 1061182 38377091 ~ 38377211 (+)
XLOC_032163 BX950188.2 non-coding upstream 802407 36511812 ~ 36511930 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G490465 NA non-coding CI01000340 null 7959672 ~ 7962143 (+)