G1323862 (LOC100380742)


Basic Information

Item Value
gene id G1323862
gene name LOC100380742
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 71990992 ~ 71994632 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1511302
caaagttcaagggggccgaatactttcgcaaggcactgtagatattgttcggacctcaagttctgtgaggtggaagaaattcctttgttctctatgaaatcTCTATGAaaactctgtctctatactgtggtcatgaggagataatctcctccaggaatttacgacctctttGACCACTGAAGCCTAGTtgtaggagacagagagtgggggatggtactcgctgtacccaaagagggcaacgtcatgacactatcATGTAGAAGAGGTTAAAGAACATGTTTACcatggctagggttagggctagggttagggctgagggttagggttagggctagggttagggctagggttagggctgagggttaaggttagggctagggctgagggttagggttagggctgaggctagggttagggctagggttagggctgagggttagggttagggctgaggctagggttagggctgaggctatggttagggttagtgctgaggctagggttagggctagggttagggctgagggttagagttagggctgagggttagggctagggttagggctgagggttagggttagggctgaggctatggttagggttagtgctgaggGTTAGGTTTAAGAGGGTTTCTTTGGGTTGCACAGGCCTATTACAACTTTCTGCCCTGTTTCTATATTGTACATCAGACCGGTATAGAGCCGGTGAGAACATGAAAGGCCCAGAGCTCCGAGGGGTCACCCATGACAGTTGAACAACAGGAGGAAGACAATTGTTGATCAAGTGCTGGGGGTAAACAcgcttcatttaaaaaaaaaaatgtatataataaAATCATAATAAAACAGGCAAACTGGATCAATAAATGAATAGATAAATAATGAAATAAGTAAGTACGTAATTGGAACTCACACCAAGGGATGAAGGGACTAAGTGCTCCAAAGATAAGTGCTATGTTAAAGTGTTTGATATAATAAACTTCAATATAAAAAAGACAAAACCAGATTCAGAAAATAAATACGTTATTTTTTCTTGAACTTCCTCCTCGTATCAGTGGCCCCTCCTGCTCTCTAAATTAGGCCCTCACTAACTCCCACTGTCAATGCTTTATCCTACTCTTTACCATTCATACCGGGTGGAGCTTCAGTTTTGCTATCCACCTGGATTCACTTGCTCTTCTCTGGCCTATGGTCCAGGAGGCTTTCATCTCCAGACCGGTGATGTtaagggttgaggctagggttaggtttaggtttgaggttagggttgggtttaaaggttaggtttagggttaggtttgaggctagggttaggttagggttgaggttagggttagggttagggttaaggttagggttgtggttgaggttagggttgtggttgaggctagggttagggttgaggttagggtcgtggttgaggttagggttgtggttgaggttgaggttagggttgtggttgaggttgaggttagggttgtggttgaggttgaggttagggttgaaccgggatgtggtcATACAGCTAGTATGGCCCTCACCATCtcgtggggttaggggttagtatgACCCTCACCATCTcacagggttagaggttagtatGACCCTCACCATCTcattgggttaggggttagtacgACCCTCACCATCtcgtggggttaggggttaggggttagtacgACCCTCACCATCtcgtggggttaggggttaggggttagtatgACCCCACCATCtcatggggttaggggttaatacGACCCTCATTATCTCgtgaggttaggggttaggggttaggggttagtacgACCCTCACCATCtcgtggggttaggggttaggggttagtacgACCCTCACCATCTCgtggggttatgggttaggggttaggggttaggggttagtacgACCCTCACCATCttgtggggttaggggttaggggttagtatgACCCCACCATCtcatggggttaggggttaggggttactaTGACCCTCACCATCTCgtgggtttaggggttaggggttagtacgACCCTCACCATCTCGtgtgtttaggggttaggggttagtacgACCCTCACCATCtcgtggggttaggggttaggggttagtacgACCCTCACCATCTCgtggggttatgggttaggggttaggggttaggggttagtacgACCCTCACCATCttgtggggttaggggttaggggttagtatgACCCCACCATCtcatggggttaggggttaggggttactaTGACCCTCACCATCTCgtgggtttaggggttaggggttagtacgACCCTCACCATCTCgtgggtttaggggttaggggttagtacgACCCTCACCATCtcgtggggttaggggttaggggttagtacgACCCTCACCATCTCgtggggttatgggttaggggttaggggttaggggttagtacgACCCTCACCATCttgtggggttaggggttaggggttagtatgACCCCACCATCtcatggggttaggggttaggggttactaTGACCCTCACCATCTTgtgggtttaggggttaggggttagtacgACCCTCACCATCTCgtgggtttaggggttaggggttagtacgACCCTCACCATCTCGTGGGTAGTAGATAGTGGTCGACAGGCTGTAGGGTCCATCTCCTTTGGAGTTAAACGTCTTCACCTTCACCTGGAACTCCCTGACCTGGAAGTCGTTCGACTTGACCCTGAAAGAGGCGTCTCGATGGACGTAGCGTCGTGTCTCTGGGTCTGATATGGTCTCATACCACCAGTCAACCTCATCATGAGGCTTGAAGGCCACAACGTAGCCAAACTTCTTACCGTAGAAGTACTGTGGCTGTACGGG

Function

NR:

description
Contactin-1a precursor, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1511302 True 2860 lncRNA 0.50 2 71990992 71994632

Neighbor

gene id symbol gene type direction distance location
LOC118938841 NA coding upstream 14843 71973676 ~ 71976465 (+)
LOC110490816 LOC106609794 coding upstream 212289 71764771 ~ 71778703 (+)
LOC110490815 LOC106576513 coding upstream 227549 71738171 ~ 71763443 (+)
LOC110490715 zcrb1 coding upstream 253801 71734459 ~ 71737191 (+)
LOC110499701 LOC106576510 coding upstream 305381 71630292 ~ 71685611 (+)
LOC118938842 NA coding downstream 24085 72018717 ~ 72019300 (+)
LOC118938843 NA coding downstream 59128 72053760 ~ 72054124 (+)
LOC110490794 LOC106598106 coding downstream 206335 72200967 ~ 72203946 (+)
si:ch73-139j3.4 NA coding downstream 234987 72229619 ~ 72236599 (+)
LOC118938845 NA coding downstream 242298 72236930 ~ 72238063 (+)
G1323827 NA non-coding upstream 65072 71924883 ~ 71925920 (+)
G1323724 NA non-coding upstream 190409 71800351 ~ 71800583 (+)
G1323722 NA non-coding upstream 191049 71799678 ~ 71799943 (+)
G1323720 NA non-coding upstream 193810 71796840 ~ 71797182 (+)
G1323868 LOC100380742 non-coding downstream 3169 71997801 ~ 71998665 (+)
G1323871 NA non-coding downstream 6389 72001021 ~ 72002850 (+)
G1323873 NA non-coding downstream 12403 72007035 ~ 72008624 (+)
G1323879 NA non-coding downstream 17913 72012545 ~ 72012882 (+)
G1323882 NA non-coding downstream 23126 72017758 ~ 72018637 (+)
G1322763 NA other upstream 1053847 70936225 ~ 70937145 (+)
G1322725 NA other upstream 1143048 70843945 ~ 70847944 (+)
G1322161 NA other upstream 2087334 69900944 ~ 69903658 (+)
G1322119 NA other upstream 2191130 69798196 ~ 69799862 (+)
G1321053 NA other upstream 3195011 68794598 ~ 68795981 (+)
G1323962 NA other downstream 195791 72190423 ~ 72191163 (+)
LOC110531894 LOC106598741 other downstream 461585 72416050 ~ 72481441 (+)
LOC110490361 LOC106609821 other downstream 747581 72742193 ~ 72850175 (+)
G1324156 LOC106576365 other downstream 858934 72853566 ~ 72856022 (+)
G1324195 NA other downstream 866188 72860820 ~ 72865809 (+)

Expression


Co-expression Network