G1323868 (LOC100380742)


Basic Information

Item Value
gene id G1323868
gene name LOC100380742
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 71997801 ~ 71998665 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1511312
CGTGAGTTGTTGAAGAGCACTTCTTTTCCCTTGGTCCAGGTGAACCTGGGTCTGGGGGCAGCTCTGGGCTTACACTCTATGACCACACGGCCGTTGTTAGCTCCTAGAAGATACTTCTTCACTGGGTTCAACTCAAACGTCGGGGCACCAATGACACGTAGCTCAGCGCTGGCGTAGATGATACCCCAGTAGTTCTCAGCGATACACTGGTACATCCCAGAGTCCTCAAATGTCAGACTGGAGAACTTCAGCTCACCTTTACCATACTGGGAAAAAAtagtactagataagatggtgcccatctttcctattgaattagtactagataagatggtgcccatctttcctattgaattagtactagataagatggtgcccatctttcctattgaattagtactagataagatggtgcccatctttcctattgaattagtactagataagatggtgcccatctttcctattgaattagtactagataagatggtgccaatctttcctattgaattagtactagataagatggtgc

Function

NR:

description
contactin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1511312 True 532 lncRNA 0.44 2 71997801 71998665

Neighbor

gene id symbol gene type direction distance location
LOC118938841 NA coding upstream 21652 71973676 ~ 71976465 (+)
LOC110490816 LOC106609794 coding upstream 219098 71764771 ~ 71778703 (+)
LOC110490815 LOC106576513 coding upstream 234358 71738171 ~ 71763443 (+)
LOC110490715 zcrb1 coding upstream 260610 71734459 ~ 71737191 (+)
LOC110499701 LOC106576510 coding upstream 312190 71630292 ~ 71685611 (+)
LOC118938842 NA coding downstream 20052 72018717 ~ 72019300 (+)
LOC118938843 NA coding downstream 55095 72053760 ~ 72054124 (+)
LOC110490794 LOC106598106 coding downstream 202302 72200967 ~ 72203946 (+)
si:ch73-139j3.4 NA coding downstream 230954 72229619 ~ 72236599 (+)
LOC118938845 NA coding downstream 238265 72236930 ~ 72238063 (+)
G1323862 LOC100380742 non-coding upstream 3169 71990992 ~ 71994632 (+)
G1323827 NA non-coding upstream 71881 71924883 ~ 71925920 (+)
G1323724 NA non-coding upstream 197218 71800351 ~ 71800583 (+)
G1323722 NA non-coding upstream 197858 71799678 ~ 71799943 (+)
G1323871 NA non-coding downstream 2356 72001021 ~ 72002850 (+)
G1323873 NA non-coding downstream 8370 72007035 ~ 72008624 (+)
G1323879 NA non-coding downstream 13880 72012545 ~ 72012882 (+)
G1323882 NA non-coding downstream 19093 72017758 ~ 72018637 (+)
G1323886 NA non-coding downstream 34608 72033273 ~ 72034362 (+)
G1322763 NA other upstream 1060656 70936225 ~ 70937145 (+)
G1322725 NA other upstream 1149857 70843945 ~ 70847944 (+)
G1322161 NA other upstream 2094143 69900944 ~ 69903658 (+)
G1322119 NA other upstream 2197939 69798196 ~ 69799862 (+)
G1321053 NA other upstream 3201820 68794598 ~ 68795981 (+)
G1323962 NA other downstream 191758 72190423 ~ 72191163 (+)
LOC110531894 LOC106598741 other downstream 457552 72416050 ~ 72481441 (+)
LOC110490361 LOC106609821 other downstream 743548 72742193 ~ 72850175 (+)
G1324156 LOC106576365 other downstream 854901 72853566 ~ 72856022 (+)
G1324195 NA other downstream 862155 72860820 ~ 72865809 (+)

Expression


Co-expression Network