XLOC_032178


Basic Information

Item Value
gene id XLOC_032178
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 37470116 ~ 37476101 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064904
AAGAGACAATGGAGCACGTGATAAATGACTGTGTCAATATAGAGTCATTCTTTAATACAGAATACGCTCGGTTGGGTAAGTAAGTTTAAATCTACTCGCTGTGTTTTTAGGACTGGTGATGCAGCTCTTCTCTGCTGCTCTGAAGCTAAACTGCTGACCTCAGTGTTGTAAGAGAAACAGTGTTTAGAGAtgacactggacttttctccaaTACCAGAGTACATACATACAAGAGGAATCTCTGTAGCACTATTATGCGGGTCAGTTTGATCTGTTACATTAAAAGAGAATCTTTGAAAGAATTATGAATATAAAGAAGCAATGGAACCTTTTTATTTCAGCTGTGCTGCTCCATTGTTTTCAGTTTGACAAAGCCAACTTAATCTGACTCCAGTTGACCTTCTTTTTACTAAACTGAAATTCCATAAGAACAGAATGGAGTGGCTCCAAGGGCTTCTTTGTCTTATTATGCCATGAAACCCccattttaaagacaatgttTGGAAAAACAGACAATACAGTATTTCATTCATAGCACAAAAGGGCTTTTGCACATTATGCAAATTGTAATAATAGTCTAATGTTTATTGCATTCATTGAGAACACAAGTAGATGTTATTCTGTTATTGTGCTCCAAACTGAAATGGCTCTTGTGTGATAGAAAGAGCATATGAAGAAAACCCTGTCTGACATTTTCctataaaatgagcatttttctcaacatcctggttatgttcaggtatttcactttaaaggcaatgaaaataatttataatgttatataagAGTAAAATTACTGAACAACACACAatggctgagaaaaatgctaattacaGATGAAAATTTTAGACTGCACTTAGAGGTTttatttgcatctaaactcttttaTTTGCTGATTATTTGCTAAACATGATTTTGTTTaggatatttacaaatattgttaTTTGACATCAGATTATTGTTGAGGTAATGAGCTCTAtgcagctagagttttaaagccaaagATAAACTTCTGgcgaaagcttaatgtgactttttaatttcacaaggttgtaattgcaatacattcagttaaatagacttaagcgtTCATTTAGTTGGTCAAGCCTAAAACGAGATGAACGACCGTTGTAACCACTAGCTCCGTCAGTATCAACAGGCTAGGGCAGAAATTacactgaaaatactggggtCAAATAAACTGTCATGTTATAAAGACATGGATGAGGGAAATGGAATTTTATGCAGTacttcttgtccgatctgagatCCACTTCATGTCGTTTAACTAACAGGCAAGTGAAGATcactaatttttaaagaaatcagatctaaaacgtgacaattttgtcatggaaagacagttcacggaagcccttgggctgtctggctgaaaattaaaagtctgtgtgcatatagcgcATTACACAGcaatcatttctttctttctaataGATATCTTGgcttaaacaaggctaaacttggactGTCAGTGAATTTAGACGGCTAAAATAGTCCTaaaatagactagtcatcaaattaTCTATCTAATCTAGTCTATTTTTGGACTATTTTTGTTCACTGACAGACAAAATGTAGCCTTTTTTAAAGTCAAGATCtgtctttaaatgtttcttaaacaaCATTTATTGATGGGTATTGCTACTTTTGATCATTGCtgagtaaaagtattaatttatgtGAAAATATATCAAACTTACTAGCCCCATATGTTTACACAGCAAGCATTTTTAATAGACGTCTTGactaaaacaaatctaaatttgGGCTTTCAGTGAATCTAGACGgctaaaaatagtacaaaaaatagactagtcatcaaatagtcTATCTCGTCTTGTCTATTTTTGGACTATTTTAGACGTTTGTTCACTGACAGACAAAATGTTGCCTTTTTTAAAGCCAAAATGTGTCTTTAAATGTctattaaacataacatttattgATATGTATTGCTATTTCTGATCATTGCtgagtaaatgtattaatttttgtgAAAATATGTCAAACCTACCAgctccatattttttacacagcaagCATTTCTATTTTGTTTAGAGACGCCTTGagtaaaacaaggctaaatttgtgcTGTCAGTGAATCTATACGGCTAAGATAGTCTGaaaaatagactagtcatcaaatagtcTATCTCATCTAGtctatttttggactattgttagaAGACGTCTGTTCACTGACAGACAaaattttgcctttttttaaagCCAAGATGTTCTTTAAATGTCTAATTAAACACAACATGTATTGATATGTATTGCTACTTTTGATCATTGCTAAACAAAAGTATTCATTTATCTGAAAATATATCAATTTACTAGCCCCATATTTTTACACagcaagcatttctgttttttaaCTAGACATCTTGACTacaacaaggctaaatttgggctgtcaatgAATCTAGATGGCTAAAATAGTCTAAAAAATAGACTCGTCATCAAATAATCTATCTCATCTAGtctatttttggactattgttagacGTCTGTTCACTGACAAACAAAACAATGCCTTTTTTAAGCCAagattaaacacatttttggTGGGTTTTGCTACGTTTAATCAttgctaaataaaagtattaacttatgtgtaaatatataaaacttaCAAGTCCCATATTTATGAACAGCAATGTGCatctatatattattttcaaGGCATTGTGCATTCTAAAAAAAAGTCTCCTaagagttttatttattgttcaagTCCAGAGCTGATTGATTATTCAATATATGTTGCTTGCAAGATTAATATGTTTATGTTAAAAGGTGTTGACAATCCGATTTGGAGGTATCTTCTTTCTATTCTCACGTGAACGGGTTCATCCAGTTTGTTTTATGGCGATCTAGTTTCTAGTACAGATCCAGctctagtcaaacacacctggcTGAATAAGGTCACAGAGTTTACTCAAATTACACGGGTGTTTTAAAGCAGACTGATCATAGCTGCTTTAAACTCGCACTGCATCCAAAAGTGCCTACTACATGCATAGTAGGTATTAGatttgtcccaaaaaaacttGGTCATTGAAAAAGCATGTTCAATATAGTATGAATGTGTGTACTATGAATGTTAGTCGCGTGACTCTTCTGTGGCCCCATAGAGAAGTACACGTGTCCATCAAATGTGAATCTTATAAGAAGTGGCAGGTAATCTGGGTATTTTTAGTATGAGAATGCCTACTGTTCTCTGCTTTTTTGGCTGTACACCCAGAAGATTCCAATCACACACTCTTTATTTTAAGTCCTACTAGAATCACCCAGGAGGTCACAGGAATTAACTAAGGCTTAATTACACTGAATTAAGACATTGACATAAATCATTAaactaatatacactcactgaGAGTAATCAACAGAACAGAGAACAGATGTAAATAAGTAACTATTGAAACAAAGACCCTTTACCACAATGGTGGCTTAATAAACATAGGATTACAGGTTCAAACTGGTTTTCCAGACCAGTTAAACTTGGCATTGCTGGTACCAagaatcatatatatttttttaaagatgcagTACCCACTTGTTAAGTTTGACATCACGTGAAGCgacttccgggtccaagcgctctattcggggagactcatgaaatgttaataataaacgtttacaaagcgatttaatacgttcgaaaatcacgatcgctatatatatgtccatgcctaatatccgacaGCCagaaagtttttcattttttttataaattgttaaaattttggtatttattatgcagcaagcccagaaaTTGTTGTGTACACAATGactgtatataaaattaactttaatgtgtgatatgaataaaaagtgatcataaactaataatttctcaactcaaatgagtggcggcttggccGAATTTGTCAGGCCAATAATTCCCAAAATTCTGATAAGTGGCTCAAACTGTTTGGGCAGCCGTTCACGCAGATCTGCCATTTGCACGCGCTGCATTCACCTGCACATGAGAGagcgcaagaaaaaaaaaatgctgaatcaaaacttcgTAAAATCATGAATCAATACTAAAGTtagttttgcatgctggaggatgGATGAcatcatggctgaagtatttttttttattcagctaatgttttgatttaaacctattttagtcatgcaaagccAAAGTCTAAAGAAAACACATGACATGTCACTTGTATctatttgaatggggaaaagtgtaatgtcAATACAGTGAAAGAAGCCCACAAGAAACCCTATCAAACATATCTATAATAGGGATTATGGTTACTTACtaagttattaacgcacagcaataccacacaaagaaaGGGTGGACTTTAAAGAAATAATCAATGTGAGGTgagctccattatagtgcactggacaagtctgaacaagttcgacCAATGCATCCATGAGGCAGGCAATTCGGTACAATTACATAATCTATCGACTTAAAAATATCGGCCTAACTTCGACATCAGACTGATAACGATAACAttgaaaatagcatttatcggccgataacgagtAAGTGTTCCTTTGACTCATACTTTAATATGCATATAAAGAATATCGGCCAATATACCGATATCTGTACTTTTTTACTCCCTTATATCAGTATATTAGCCCCCCAAAAATCGGTgggataataataaaattgaaaacattattaaatattattgcacatctgttttgtgaaagacttgaatttaatcaaacatactgtacatttagCACCTTATTTTGCAATAATGGCTGTCTGATTCTATGCTAGCACTACCTAAAGCTGTGGATGTTTCTTTTAGTGTCTATGATTTATATTTCtcttttaacagagcaagtgcTGTGCTGTTTTAACACCGCAGTCAAACTCAGCTTTTTCCTCAAATGATCAATAAGCCTTAGGCAGCAATGAAGTCCTGCCCGAGCCGCAAACACAGCAGCCGCTCAACCAAAAGAAGACAGTTGAGTCTGAAGATAACCTGGTTAAAGCTTGAAATGAACATCAGCTGACAGGTGAGCATTATTATTACACACTGTaacatttttagttgaatcaaatgaacttttctagtcatctctaCTTACACCAATTAGATCGAAATATAGAGTTAAACTTAGTATAACTTAAATTATGTTGTTAAAACCTGATAAACTTATTCAAATAAGTTAAGACAGCATTAAAATATTGTTGTCTTGTCTTCTTGCTATTAGAGTTTTACAGTGCACACTCCAAAAACTTTCAAATTGGTCTAAATGTTGACAGTATAAAGGGAATATAAAGAGTTTAGACCAACAGTCCATACTTGAAACTAATTTAGGTTGAATTACGCCAGTGAGGGAAACTGGAAAAGTTTGATTGCCATCATAAATCACACACAGTTGTTCTTCAGGTTAATATGATTGAAGAGATAAGCTTATTTATGAGGGTAACAAAGCAGCCATGACTTTACATAACACATTTAAGAATGAAGAAATGAAATTGTTCAGCgatcatcattattatcaagCGCAGGCTCTGTGTTAAAGCTCTTGAAAAtgtaaatgattcagtgattaTGGCGTTCTCTGCTTGTTGACAGCAGGAGGCAGGTGCAGCCCGAGGAAACTCCACAGAGTGCTGAAATGGTGGTTTCTGGAGCGGAGAAGATTAATAAAACTGCAGAGAACACTTCCATTTGGACTAGCCAGAGGCTCTGGGAGAAGAATGAGGTTGAAGAAAAATGACAGAACGCTAATCACTGCTTTAAAGCTTCACATGAACATGATCTGTGTGACCTGACGATCTGAAGTGGCAAACATGTACACCAGTTTGGATTGTGAATTCGCTTATGCAAAGCATTCATTTgataaatacagaaacagaaaattATTAATGCTCATATATTTACagggtttcaccaagttaaatttaaggctttcaaaagacattttttaagactattatgaatgaaatttt
>TCONS_00062868
gagcaagtgcTGTGCTGTTTTAACACCGCAGTCAAACTCAGCTTTTTCCTCAAATGATCAATAAGCCTTAGGCAGCAATGAAGTCCTGCCCGAGCCGCAAACACAGCAGCCGCTCAACCAAAAGAAGACAGTTGAGTCTGAAGATAACCTGGTTAAAGCTTGAAATGAACATCAGCTGACAGCAGGAGGCAGGTGCAGCCCGAGGAAACTCCACAGAGTGCTGAAATGGTGGTTTCTGGAGCGGAGAAGATTAATAAAACTGCAGAGAACACTTCCATTTGGACTAGCCAGAGGCTCTGGGAGAAGAATGAGGTTGAAGAAAAATGACAGAACGCTAATCACTGCTTTAAAGCTTCACATGAACATGATCTGTGTGACCTGACGATCTGAAGTGGCAAACATGTACACCAGTTTGGATTGTGAATTCGCTTATGCAAAGCATTCATTTgataaatacagaaacagaaaattATTAATGCTCATATATTTACagggtttcaccaagttaaatttaaggctttcaaaagacattttttaagactattatgaatgaaatttt

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0048731 system development biological_process
GO:0021537 telencephalon development biological_process
GO:0035239 tube morphogenesis biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0043009 chordate embryonic development biological_process
GO:0048513 animal organ development biological_process
GO:0035295 tube development biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0007389 pattern specification process biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0060562 epithelial tube morphogenesis biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064904 False 5986 lncRNA 0.34 1 37470116 37476101
TCONS_00062868 True 559 lncRNA 0.41 2 37474977 37476101

Neighbor

gene id symbol gene type direction distance location
XLOC_032177 gtpbp6 coding upstream 15206 37441789 ~ 37454910 (+)
XLOC_032176 BX324166.1 coding upstream 135153 37334559 ~ 37334963 (+)
XLOC_032175 NA coding upstream 154207 37314337 ~ 37315909 (+)
XLOC_032174 ptger3 coding upstream 159067 37308716 ~ 37311049 (+)
XLOC_032173 zranb2 coding upstream 162629 37301341 ~ 37307487 (+)
XLOC_032179 slc9a7 coding downstream 53282 37529383 ~ 37600648 (+)
XLOC_032180 tubgcp5 coding downstream 147592 37623693 ~ 37652517 (+)
XLOC_032181 cyfip1 coding downstream 178977 37655078 ~ 37730907 (+)
XLOC_032182 herc2 coding downstream 276680 37752781 ~ 37847875 (+)
XLOC_032183 oca2 coding downstream 418119 37894220 ~ 38054851 (+)
XLOC_032172 NA non-coding upstream 219752 37184193 ~ 37250364 (+)
XLOC_032171 BX950870.1 non-coding upstream 479432 36990570 ~ 36990684 (+)
XLOC_032164 NA non-coding upstream 755494 36714359 ~ 36714622 (+)
XLOC_032184 AL935047.1 non-coding downstream 611394 38087495 ~ 38087611 (+)
XLOC_032185 NA non-coding downstream 882580 38358681 ~ 38360443 (+)
XLOC_032186 CR405707.1 non-coding downstream 900990 38377091 ~ 38377211 (+)
XLOC_032188 CR628341.3 non-coding downstream 1042118 38518219 ~ 38590172 (+)
XLOC_032194 NA non-coding downstream 1477380 38953481 ~ 38955126 (+)

Expression


Co-expression Network