G1323871


Basic Information

Item Value
gene id G1323871
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 72001021 ~ 72002850 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1511316
AACACTGTAGAGATGGAGTCTGGTATCTTACCCTCTTCTCTTATTGTAACACTGTAGAGATGGAGTCTGGTATCTTACCCTCTTCTCTTATTGTAACACTGTAGAGATGGAGTCTGGTATCTTACCCTCTTCTCTTATTGTAACACTGTAGAGATGGAGTCTGGTATCTTACCCTCTTCTCTTATTGTAACACTGTAGAGATGGACTCTGGTATCTTACCCTCTTATCTTATTGTAACACTGTAGAGATGGAGTTTGGTATCTTACCCTCTTCTCTTATTGTAACACTGTAGAGATGGAGTCTGGTATCTTACCCTCTTCTCTTATTGTAACACTGTAGAGATAGAGTCTGGTATCTTACCCTCTTCTCTTATTGTAACACTGTAGAGATGGAGTCTGGTATCTTACCCTCTTCTCTTATTGTAACACTGTAGAGATGGAGTCTGGTATCTTACCCTCTTCTCTTATTGTAACACTGTAGAGATGGAGTCTGGTATCTTACCCTCTTCTCTTATTGTAACACTGTAGAGATGGAGTCTGGTATCTTACCCTCTTCTCTTATTGTAACACTGTAGAGATGGAGTCTGGTATCTTACCCTCTTCTCTTATTGTAACACTGTAGAGATGGAGTCTGGTATCTTACCCTCTTCTCTTATTGTAACACTGTAGAGATGGAGTTTGGTATCTTACCCTCTTCTCTTATTGTAACACTGTAGAGATGGAGTCTGGTATCTTACCCTCTTCTCTTATTGTAACACTGTAGAGATGGAGTTTGGTATCTTACCCTCTTCTCTTATTGTAACACTGTAGAGATGGAGTTTGGTATCTTACCCTCTTCTCTTATTGTAACACTGTAGAGATGGAGTTTGGTATCTTACCCTCTTCTCTTATTGTAACACTGTAGAGATGGAGTTTGGTATCTTACCCTCTTCTCTTATTGTAACACTGTAGAGATGGAGTTTGGTATCTTACCCTCTTCTCTTATTGTAACACTGTAGAGATGGAGTCTGGTATCTTACCCTCTACATAGAGCCAGGCCTGATGCCAGTCCTGCCATTTCTGGTTGATGGCCTCACACTCGTACCCTGCTGAGTCTTCATACTGGACGTTGTAGAGGTGGAGCAGCGCTCCAGACATGCTGACCTGAGCGCTGGCAGGCAGGTCGGTAGCACCTATCTTCCTCCAGACGATATGAGGGGCCGGATTCCCAGAGCGAAGCACTCCAGTGTGACGTTGTAGTTGAGCATAGCTGTGGTGTCAGGGAACTTCACTACGAGGTCGGCCTTGTATCTCTTCTCTGGGGCTGTGGGGATGAAAGGGTCATAGGTCAACACAATGGAGTTGCCCAAAAGACATTGATGTATGGtcagtttttgtgtttttttcccaGCCTAATGTTAAGGGAGAGATTTCGCAGAGTGTAACAtgatcccagatctgtggctAGGATGCACCTCtacctagacactgatctaaggtcagttttgtgtCTTTACATCTAAAGAAACATCTTAGATTTTGGGGAGGGtttaagctgatcctagatctgagcCTAGGCGTAACATCTACC

Function

NR:

description
LOW QUALITY PROTEIN: contactin-1a-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1511316 True 1569 lncRNA 0.43 2 72001021 72002850

Neighbor

gene id symbol gene type direction distance location
LOC118938841 NA coding upstream 24872 71973676 ~ 71976465 (+)
LOC110490816 LOC106609794 coding upstream 222318 71764771 ~ 71778703 (+)
LOC110490815 LOC106576513 coding upstream 237578 71738171 ~ 71763443 (+)
LOC110490715 zcrb1 coding upstream 263830 71734459 ~ 71737191 (+)
LOC110499701 LOC106576510 coding upstream 315410 71630292 ~ 71685611 (+)
LOC118938842 NA coding downstream 15867 72018717 ~ 72019300 (+)
LOC118938843 NA coding downstream 50910 72053760 ~ 72054124 (+)
LOC110490794 LOC106598106 coding downstream 198117 72200967 ~ 72203946 (+)
si:ch73-139j3.4 NA coding downstream 226769 72229619 ~ 72236599 (+)
LOC118938845 NA coding downstream 234080 72236930 ~ 72238063 (+)
G1323868 LOC100380742 non-coding upstream 2356 71997801 ~ 71998665 (+)
G1323862 LOC100380742 non-coding upstream 6389 71990992 ~ 71994632 (+)
G1323827 NA non-coding upstream 75101 71924883 ~ 71925920 (+)
G1323724 NA non-coding upstream 200438 71800351 ~ 71800583 (+)
G1323873 NA non-coding downstream 4185 72007035 ~ 72008624 (+)
G1323879 NA non-coding downstream 9695 72012545 ~ 72012882 (+)
G1323882 NA non-coding downstream 14908 72017758 ~ 72018637 (+)
G1323886 NA non-coding downstream 30423 72033273 ~ 72034362 (+)
G1323894 NA non-coding downstream 43553 72046403 ~ 72047343 (+)
G1322763 NA other upstream 1063876 70936225 ~ 70937145 (+)
G1322725 NA other upstream 1153077 70843945 ~ 70847944 (+)
G1322161 NA other upstream 2097363 69900944 ~ 69903658 (+)
G1322119 NA other upstream 2201159 69798196 ~ 69799862 (+)
G1321053 NA other upstream 3205040 68794598 ~ 68795981 (+)
G1323962 NA other downstream 187573 72190423 ~ 72191163 (+)
LOC110531894 LOC106598741 other downstream 453367 72416050 ~ 72481441 (+)
LOC110490361 LOC106609821 other downstream 739363 72742193 ~ 72850175 (+)
G1324156 LOC106576365 other downstream 850716 72853566 ~ 72856022 (+)
G1324195 NA other downstream 857970 72860820 ~ 72865809 (+)

Expression


Co-expression Network