G1324466


Basic Information

Item Value
gene id G1324466
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 72155251 ~ 72156144 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1512147
TCTCTCCTTGTTTTgggttttctttatattttgggttGTGAGATAAGACCGGAGCAGAGCAGTATCAATATCAGTATCAGATCAGTATCAGATCAGTAGCAGAGCAGTATCAATATCAGAGCAGTATCAGTATTAGAGCAGTATCAATATCAGAGCAGTATCAGTATCAGATAAATATCAGAGCAGTATCAATATCAGAGCAGTATCAATATCAGAGCAGTATCAATATCAGAGTAGTATCAGTATCAGAGCAGTATCAATCTCAGAGCAGTTTCAGTATCAGAGCAGTACCAGTGTCAAAGCTGTATCAGTCGTCCACAAGTGTCATATTGTCCATGCTGTGACCGTGCCCAACCAATGTTACTGCTGCCAATGTAAACAACGTTGCATAACAGAAACAACCACTTACTAACGTTACAAGAAACATCAGGCAAAGTAAATGATCCAGGAACAGAACGCAGTGCATCACGTCTGTGGTGACTAACCATCTGATTATCAAATGCTTCattagatgttgcttcaatggaTGCAATTCAATCAGCAAATATGTCCCATAAGGGATGAGCAAGGAAACCATTTAGAAACTCGCCTCACTGGATGAGGAATCGATATGTTCCCACAGATTCTCACAGTTTCCTGCATCAGGAGATAATATTTGCCGGAGGGCTCCAGAAGAGGCAAGAAGAGGAGCCCATGTGATAGATAATAATGAAATGAAGCAGAATGAAGATTtacttcatgttctctctctctctctctgtctcacacacacacacacacacacacacacac
>TU1512149
TCTCTCCTTGTTTTgggttttctttatattttgggttGTGAGATAAGACCGGAGCAGAGCAGTATCAATATCAGTATCAGATCAGTATCAGATCAGTAGCAGAGCAGTATCAATATCAGAGCAGTATCAGTATTAGAGCAGTATCAATATCAGAGCAGTATCAGTATCAGAGCAGTATCAATATCAGAGCAGTATCAATATCAGAGCAGTATCAATATCAGAGTAGTATCAGTATCAGAGCAGTATCAATCTCAGAGCAGTTTCAGTATCAGAGCAGTACCAGTGTCAAAGCTGTATCAGTCGTCCACAAGTGTCATATTGTCCATGCTGTGACCGTGCCCAACCAATGTTACTGCTGCCAATGTAAACAACGTTGCATAACAGAAACAACCACTTACTAACGTTACAAGAAACATCAGGCAAAGTAAATGATCCAGGAACAGAACGCAGTGCATCACGTCTGTGGTGACTAACCATCTGATTATCAAATGCTTCattagatgttgcttcaatggaTGCAATTCAATCAGCAAATATGTCCCATAAGGGATGAGCAAGGAAACCATTTAGAAACTCGCCTCACTGGATGAGGAATCGATATGTTCCCACAGATTCTCACAGTTTCCTGCATCAGGAGATAATATTTGCCGGAGGGCTCCAGAAGAGGCAAGAAGAGGAGCCCATGTGATAGATAATAATGAAATGAAGCAGAATGAAGATTtacttcatgttctctctctctctctctgtctcacacacacacacacacacacacacacac
>TU1512150
TCTCTCCTTGTTTTgggttttctttatattttgggttGTGAGATAAGACCGGAGCAGAGCAGTATCAATATCAGTATCAGATCAGTATCAGATCAGTAGCAGAGCAGTATCAATATCAGAGCAGTATCAGTATTAGAGCAGTATCAATATCAGAGCAGTATCAGTATTAGAGCAGTATCAGTATTAGAGCAGTATCAATATCAGAGCAGTATCAGTATCAGAGCAGTATCAATATCAGAGCAGTATCAATATCAGAGTAGTATCAGTATCAGAGCAGTATCAATCTCAGAGCAGTTTCAGTATCAGAGCAGTACCAGTGTCAAAGCTGTATCAGTCGTCCACAAGTGTCATATTGTCCATGCTGTGACCGTGCCCAACCAATGTTACTGCTGCCAATGTAAACAACGTTGCATAACAGAAACAACCACTTACTAACGTTACAAGAAACATCAGGCAAAGTAAATGATCCAGGAACAGAACGCAGTGCATCACGTCTGTGGTGACTAACCATCTGATTATCAAATGCTTCattagatgttgcttcaatggaTGCAATTCAATCAGCAAATATGTCCCATAAGGGATGAGCAAGGAAACCATTTAGAAACTCGCCTCACTGGATGAGGAATCGATATGTTCCCACAGATTCTCACAGTTTCCTGCATCAGGAGATAATATTTGCCGGAGGGCTCCAGAAGAGGCAAGAAGAGGAGCCCATGTGATAGATAATAATGAAATGAAGCAGAATGAAGATTtacttcatgttctctctctctctctctgtctcacacacacacacacacacacacacacac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1512147 False 792 lncRNA 0.41 2 72155251 72156144
TU1512149 False 781 lncRNA 0.41 2 72155251 72156144
TU1512150 True 815 lncRNA 0.41 3 72155251 72156144

Neighbor

gene id symbol gene type direction distance location
LOC110500989 LOC106576674 coding downstream 4255 72022817 ~ 72150996 (-)
LOC110490787 LOC106593403 coding downstream 138203 71984728 ~ 72017048 (-)
LOC118938840 LOC106576579 coding downstream 231988 71841725 ~ 71923263 (-)
LOC110490714 LOC106593546 coding downstream 420808 71687880 ~ 71734443 (-)
LOC118938900 NA coding downstream 884079 71270357 ~ 71271172 (-)
LOC110490626 LOC106576575 coding upstream 6517 72162661 ~ 72192809 (-)
LOC110499794 LOC106609728 coding upstream 54832 72210976 ~ 72225125 (-)
LOC110499807 lsm8 coding upstream 109546 72265690 ~ 72269495 (-)
LOC110490622 LOC106595912 coding upstream 115034 72271178 ~ 72281002 (-)
LOC110490625 LOC106596128 coding upstream 150722 72306866 ~ 72315261 (-)
G1324463 NA non-coding downstream 738 72154295 ~ 72154513 (-)
G1324461 NA non-coding downstream 1394 72153564 ~ 72153857 (-)
G1324437 NA non-coding downstream 48066 72103827 ~ 72107185 (-)
G1324378 NA non-coding downstream 133488 72020935 ~ 72021763 (-)
G1324376 NA non-coding downstream 135009 71970735 ~ 72020242 (-)
G1324467 NA non-coding upstream 450 72156594 ~ 72157245 (-)
G1324469 NA non-coding upstream 4933 72161077 ~ 72161395 (-)
G1324482 NA non-coding upstream 25551 72181695 ~ 72182173 (-)
G1324484 NA non-coding upstream 36933 72193077 ~ 72193418 (-)
G1323296 LOC106609674 other downstream 917405 71202500 ~ 71237846 (-)
G1323207 NA other downstream 1115729 71025251 ~ 71039522 (-)
LOC110490645 LOC106576589 other downstream 1610031 70543356 ~ 70547418 (-)
G1324464 typh other upstream 84404 72240548 ~ 72260352 (-)
G1324512 NA other upstream 179216 72335360 ~ 72336984 (-)
G1324569 NA other upstream 251277 72407421 ~ 72407769 (-)
G1324604 NA other upstream 324261 72480405 ~ 72481169 (-)

Expression


Co-expression Network