XLOC_032181 (cyfip1)


Basic Information

Item Value
gene id XLOC_032181
gene name cyfip1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 37655078 ~ 37730907 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062875
GGAACTTCCAGCCCGAGCTGCGCCTGCGACAACATTCACCGCGAGCAGGATTCCTCCGCAAACTCCCTCAAACCTCTCCAAACAGCCGCTCATTACCACCGAAAACACTTTCACCAGTGGACTTCACTCTCTCAGCCGCCTCACGACTGGAAACCCCAccagaaaatgcatgaatgaacagTCGAAGCGGATAGTTTTTTTCCTGGAAAACCCAAGTACGGAGCAATGGCGTCCACAGTGACTCTGGAAGATGCTCTGTCCAATGTGGACTTGCTGGAGGAGCTGCCACTTCCAGATCAGCAGCCCTGCATCGAGCCTCTGCCCTCCTCACTCATTTACCAGCCCAACTTCAACACCAACTTTGAGGACCGCAATGCGTTTGTGACCGGCATCGCCCGTTACATCGAACAGGCCACCGTCCACTCCAGCATGAATGACATGTTAGAAGAAGGTCAGCAGTATGCTGTGATGCTGTACACGTGGAGGTGCTGTTCGAGAGCTATTCCTCAGGTGAAGTGTAATGAACAACCCAACAGAGTGGAGATCTACGAGAAGACTGTGGAGGTGCTCGAACCCGAAGTCAACAAACTAATGAACTTCATGTACTTTCAGAGGACAGCAATAGATCGCTTTTGTGGTGAAGTGCGTCGTCTCTGTCATGCAGAGCGGAGGAAAGACTTTGTGTCTGAAGCTTATCTGCTCACTCTGGGAAAGTTTATCAACATGTTTGCGGTGCTGGATGAACTTAAGAACATGAAGTGCAGCGTCAAAAATGACCACTCCGCCTACAAGAGAGCTGCTCAATTCCTGAGGAAAATGTCAGAGCCGTCATCAATTCAGGAATCCCAAAACCTATCTATGTTTCTGGCCAACCACAATAAGATCACTCAGTCCCTGCAGCAGCAGCTTGAAGTGATTAACGGATACGATGAGCTGTTGGCAGACATTGTTAACCTGTGTGTGGATTACTATGAAAACAAGATGTACCTCACCCCTAGTGAGAAACACATGCTACTCAAAGTAATGGGCTTTGGTCTCTATCTCATGGATGGAAGTAACAGCAACATCTACAAACTGGAAGCTAAGAAGAGAATCAACCTCACAAAGATCGACAAGTTCTTtaagCAATTGCAGGTAGTGCCTCTGTTTGGTGACATGCAGATTGAATTGGCTCGCTATATCAAAACCAGCGCTCACTACGAGGAAAACAAGTCTAGGTGGTCATGCACGTCAGCAGGCAGTAGCCCACAGTACAATGTCTGCGAACAGATGATTCAAATCCGGGAGGATCACATGCGCTTCATTTCTGAATTGGCTCGATACAGCAACAGTGAGGTGGTGACTGGCTCTGGGCGTCAGGACGCTCAGAAGACGGACTCTGAGTACAGGAAGTTGTTTGATCTGGCTCTGCAGGGCCTGCAGCTGCTCTCTCAGTGGAGCGCTCAGATCATGGAAGTGTATTCCTGGAAATTGGTGCATCCTACAGACAAATACTCCAACAAAGAATGCCCTGACAATGCTGAAGAGTATGAGCGTGCTACCAGATACAACTACACCAGTGAGGAGAAATTTGCTCTGGTGGAGGTCCTCGCCATGACTTTGCCCAAGTCACGCTCCGTGAACCGCTGCGCCAGGCcatcaagaaaaaaaagaa
>TCONS_00062876
GGAACTTCCAGCCCGAGCTGCGCCTGCGACAACATTCACCGCGAGCAGGATTCCTCCGCAAACTCCCTCAAACCTCTCCAAACAGCCGCTCATTACCACCGAAAACACTTTCACCAGTGGACTTCACTCTCTCAGCCGCCTCACGACTGGAAACCCCAccagaaaatgcatgaatgaacagTCGAAGCGGATAGTTTTTTTCCTGGAAAACCCAAGTACGGAGCAATGGCGTCCACAGTGACTCTGGAAGATGCTCTGTCCAATGTGGACTTGCTGGAGGAGCTGCCACTTCCAGATCAGCAGCCCTGCATCGAGCCTCTGCCCTCCTCACTCATTTACCAGCCCAACTTCAACACCAACTTTGAGGACCGCAATGCGTTTGTGACCGGCATCGCCCGTTACATCGAACAGGCCACCGTCCACTCCAGCATGAATGACATGTTAGAAGAAGGTCAGCAGTATGCTGTGATGCTGTACACGTGGAGGTGCTGTTCGAGAGCTATTCCTCAGGTGAAGTGTAATGAACAACCCAACAGAGTGGAGATCTACGAGAAGACTGTGGAGGTGCTCGAACCCGAAGTCAACAAACTAATGAACTTCATGTACTTTCAGAGGACAGCAATAGATCGCTTTTGTGGTGAAGTGCGTCGTCTCTGTCATGCAGAGCGGAGGAAAGACTTTGTGTCTGAAGCTTATCTGCTCACTCTGGGAAAGTTTATCAACATGTTTGCGGTGCTGGATGAACTTAAGAACATGAAGTGCAGCGTCAAAAATGACCACTCCGCCTACAAGAGAGCTGCTCAATTCCTGAGGAAAATGTCAGAGCCGTCATCAATTCAGGAATCCCAAAACCTATCTATGTTTCTGGCCAACCACAATAAGATCACTCAGTCCCTGCAGCAGCAGCTTGAAGTGATTAACGGATACGATGAGCTGTTGGCAGACATTGTTAACCTGTGTGTGGATTACTATGAAAACAAGATGTACCTCACCCCTAGTGAGAAACACATGCTACTCAAAGTAATGGGCTTTGGTCTCTATCTCATGGATGGAAGTAACAGCAACATCTACAAACTGGAAGCTAAGAAGAGAATCAACCTCACAAAGATCGACAAGTTCTTtaagCAATTGCAGGTAGTGCCTCTGTTTGGTGACATGCAGATTGAATTGGCTCGCTATATCAAAACCAGCGCTCACTACGAGGAAAACAAGTCTAGGTGGTCATGCACGTCAGCAGGCAGTAGCCCACAGTACAATGTCTGCGAACAGATGATTCAAATCCGGGAGGATCACATGCGCTTCATTTCTGAATTGGCTCGATACAGCAACAGTGAGGTGGTGACTGGCTCTGGGCGTCAGGACGCTCAGAAGACGGACTCTGAGTACAGGAAGTTGTTTGATCTGGCTCTGCAGGGCCTGCAGCTGCTCTCTCAGTGGAGCGCTCAGATCATGGAAGTGTATTCCTGGAAATTGGTGCATCCTACAGACAAATACTCCAACAAAGAATGCCCTGACAATGCTGAAGAGTATGAGCGTGCTACCAGATACAACTACACCAGTGAGGAGAAATTTGCTCTGGTGGAGGTCCTCGCCATGATAAAGGGCTTGCAGGTACTGATGGGCCGAATGGAAAGTGTGTTTAACCACGCCATCCGTCACACCATTTATTCAGCTCTGCAAGACTTTGCCCAAGTCACGCTCCGTGAACCGCTGCGCCAGGCcatcaagaaaaaaaagaatgtcGTCCAGAGtGTCCTCCAGGCCATCCGTAAGACCGTCTGTGATTGGGAAACAGGCAGAGAGCCACATAATGACCCAGCGCTGCGGGGAGAGAAGGACCCTAAAGGGGGATTTGATATCAAAGTCCCTCGTCGCGCTGTTGGACCCTCCAGCACTCAACTGTATATGGTCAGAACAATGCTGGAGTCTCTGGTCGCAGATAAGAGCGGATCAAAGAAGACCTTGCGCAGTAGTCTGGAGGGGCCGACCATTCTGGACATCGAGAAGTTTCATCGCGAATCCTTTTTCTACACTCATCTGCTCAACTTCAGTGAGACTCTGCAGCAGTGCTGTGATTTGTCCCAGCTCTGGTTTCGGGAGTTCTTTCTGGAGCTCACTATGGGCCGCCGCATCCAGTTCCCCATTGAGATGTCCATGCCCTGGATCCTTACCGACCACATCCTGGAGACTAAAGAGGCGTCTATGATGGaGTACGTGTTATATTCTCTGGATTTGTACAACGACAGTGCACACTACGCTCTCACTAAGTTTAAAAAGCAGTTCCTTTATGATGAGATTGAAGCGGAGGTGAACCTCTGCTTTGACCAGTTTGTCTACAAACTTGCTGATCAAATATTTGCCTACTACAAGGTTATTGCCGGAAGTCTTCTTCTGGATAAAAGACTAAGAGCCGAATGTAAGAACCAGGGTGCAAACATCTCATGGCCTTCCTCCAATCGTTATGAGACACTCCTGAAACAGAGACACGTCCAACTCCTTGGACGATCGATTGACTTGAACCGCCTGATCACTCAGCGTGTGTCTTCTGCGCTTTACAAATCCCTGGAGCTGGCCATCAGCCGCTTCGAGAGCGAGGACCTCACCTCCATCATGGAGTTGGAAGGTTTGTTGGACATAAACCGAATGACCCATAAACTCCTCAGTAAGTATTTGACACTGGACAGCATCGACGCCATGTTCCGAGAGGCAAACCACAACGTTTCCGCACCCTACGGCAGAATCACTCTTCATGTCTTCTGGGAGTTGAACTATGACTTCTTGCCAAACTACTGTTACAATGGCTCCACGAACAGGTTTGTTCGCACCATTCTGCCGTTTTCACAGGAGTTTCAGAGAGACAAGCCTCCCAACGCTCAGCCACAGTACCTGTATGGCTCAAAGGCCTTGAATTTGGCGTACAGCAGCATATACAGCCTCTACCGCAACTTTGTGGGACCTCCACATATTAAGGCTATTTGCAGACTTCTGGGATACCAGGGAATCGCTGTGGTGATGGAGGAGCTGTTAAAAGTTGTCAAAAGCCTGCTTCAAGGCACCATCCTTCAGTATGTGAAGACATTGATGGAAGTGATGCCCAAGATTTGCCGTCTGCCTCGCCATGAGTATGGCTCACCAGGTATCCTGGAGTTCTTCCACCACCAGCTGAAAGACATTGTGGAGTACGCTGAGCTGAAGACTGTGTGCTTCCAGAACCTGAGGGAGGTTGGAAACGCATTGCTCTTCTGCCTTCTGACTGAACAGAGCTTGTCCCAAGAGGAGGTGTGCGACTTGTTGCACGCAGCTCCCTTCCAGAACATCCTACCAAGGGTTCACGTCAAAGAAGGAGAGCGTCTGGATGCAAAGATGAAGCGTTTGGAGGCCAAATACACAGCGCTGCATCTGGTGCCTCTGATTGAACGTCTGGGAACCCCTCAGCAAATCGCCATCGCCCGTGAGGGAGACCTGCTGACTAAAGAGCGTCTGTGTTGCGGACTCTCCATATTTGAGGTTATTCTGACACGCGTCCGCGCTTACCTGGACGACCCGATCTGGCGTGGGCCTTTACCCAGCAATGGAGTGATGCATGTAGACGAGTGTGTGGAGTTTCACCGGCTGTGGAGCGCAATGCAGTTTGTGTACTGCATCCCTGTGGGCGCACATGAGTTCACTGTTGAGCAATGTTTCGGAGACGGTCTGAACTGGGCTGGTTGCATGATCATCACTTTACTCGGTCAGCACAGACGCTTTGACATCCTGGACTTCAGCTACCATCTCTTGAAGGTGCAGAAACACGACGGTAAAGATGAGATCATCAAGAGCGTGCCTCTGAAGAAAATGGTTGACCGAATTCGCAAATTCCAGATTCTGAACGATGAGATCTTCGCCATTTTGAACAAGTACCTGAAGTCTGGAGATGGAGAGAACATGCCAGTAGAACACGTGCGGTGCTTTCAGCCTCCCATCCATCAGTCTTTGGCCAGTAACTGagatttatttgttcatttgcaCCAGTTTGAAGTGGAAGAGATGGGAAAAGAGAGGGAAATATTTAGCAACGTGTTTAGGACCAGTTTCACTGTCACATTCTACTTAATGATGCCTTTCTTATGCCACCCTGTAGTTTCTGCAGAGCCAGTAAGTTGCCTTGTGATTGGTCGAGTGATTTGATTTGCACCAATTACTGCACCCTACTCAGGCTTTGGTTAATCAGGCCAAGATATGTTTATGATGTACACAAACATGGCTCAGTTTTACTAGCGTATTTCaggttgattttttttgtacacataaacacacacatacacacacactcgtgcCTTATTATAGATAAATTGACTATAATCTTTTATATGTTAATGATAGCACAGCACTACTCATGTTTTATACTTGGGAACAGCAGTGGGGAATGGTTCCAAAATGGCCAAGTGGGTTTTATCAAAGGGTTATTTAAGCTTTTGCTGTAGTGCGAGTCCAGCGGTATTTTTTCTATGTGGTGTTGAATGATTgcatgcaagtttttttttcttctattataCTTAATAAAACTTTAAGCGTAGCCAAGTTCTTACTCCTCATAAACGTGCCTTTTTTGTATTTGAATTGTGTAATCaaattttaattcaataaaaaatgtatcaaattcaGG
>TCONS_00062877
ctaataattctgactttaactgtatatgagaTTTTATATTTGTTCATAATAAACTGCttcattttcttgtttttcaTGATTATTTAGGCCTTGAATTTGGCGTACAGCAGCATATACAGCCTCTACCGCAACTTTGTGGGACCTCCACATATTAAGGCTATTTGCAGACTTCTGGGATACCAGGGAATCGCTGTGGTGATGGAGGAGCTGTTAAAAGTTGTCAAAAGCCTGCTTCAAGGCACCATCCTTCAGTATGTGAAGACATTGATGGAAGTGATGCCCAAGATTTGCCGTCTGCCTCGCCATGAGTATGGCTCACCAGGTATCCTGGAGTTCTTCCACCACCAGCTGAAAGACATTGTGGAGTACGCTGAGCTGAAGACTGTGTGCTTCCAGAACCTGAGGGAGGTTGGAAACGCATTGCTCTTCTGCCTTCTGACTGAACAGAGCTTGGTGAGAAAACACAACATCTCCATTCACATGATTGAACTTTAAGGTGATTAAAGTGAT
>TCONS_00062878
ATCAGTtagtagagagcatttgattggtcaagatgtGATGAGAATATGAGAtgacatgaaaaaaaattgttgatccatttaggcggaagtggaAAATCTACTAAGTTTTGAAGTTTATATcttgtaaatgcatttttttttattgttttgaaccACACTAgtttatagatatccttaaaacttgtgcttaaatcttaaaaaatgttattttaatttcccAAGACCTTTAACTCAGCCTGCTTATTTGAATTTAACTCAGGCTTTGACTCTCCACACTTCCATTGATTGCTCAGCTTTTCGTTCTCTTTGGGCTTCATTTTCTATAATGAGTTCCTCTCTTTAATGCAGTCCCAAGAGGAGGTGTGCGACTTGTTGCACGCAGCTCCCTTCCAGAACATCCTACCAAGGGTTCACGTCAAAGAAGGAGAGCGTCTGGATGCAAAGATGAAGCGTTTGGAGGCCAAATACACAGCGCTGCATCTGGTGCCTCTGATTGAACGTCTGGGAACCCCTCA

Function

symbol description
cyfip1 Predicted to enable RNA 7-methylguanosine cap binding activity and actin filament binding activity. Acts upstream of or within with a positive effect on axon extension. Predicted to be located in cytoplasm. Predicted to be part of SCAR complex. Predicted to be active in neuron projection and synapse. Human ortholog(s) of this gene implicated in autism spectrum disorder and schizophrenia. Orthologous to human CYFIP1 (cytoplasmic FMR1 interacting protein 1).

GO:

id name namespace
GO:0031529 ruffle organization biological_process
GO:0030154 cell differentiation biological_process
GO:0000902 cell morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0006417 regulation of translation biological_process
GO:0030031 cell projection assembly biological_process
GO:0099563 modification of synaptic structure biological_process
GO:0030032 lamellipodium assembly biological_process
GO:0007399 nervous system development biological_process
GO:0048675 axon extension biological_process
GO:0007411 axon guidance biological_process
GO:0008360 regulation of cell shape biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0001726 ruffle cellular_component
GO:0042995 cell projection cellular_component
GO:0043005 neuron projection cellular_component
GO:0045202 synapse cellular_component
GO:0030027 lamellipodium cellular_component
GO:0030054 cell junction cellular_component
GO:0031209 SCAR complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0000340 RNA 7-methylguanosine cap binding molecular_function
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8557 Predicted to enable RNA 7-methylguanosine cap binding activity and actin filament binding activity. Acts upstream of or within with a positive effect on axon extension. Predicted to be located in cytoplasm. Predicted to be part of SCAR complex. Predicted to be active in neuron projection and synapse. Human ortholog(s) of this gene implicated in autism spectrum disorder and schizophrenia. Orthologous to human CYFIP1 (cytoplasmic FMR1 interacting protein 1).

Ensembl:

ensembl_id ENSDARG00000044345

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062875 False 1654 mRNA 0.49 15 37655078 37692214
TCONS_00062876 False 4645 mRNA 0.48 31 37655078 37730907
TCONS_00062877 False 510 processed_transcript 0.43 3 37715272 37717110
TCONS_00062878 True 515 lncRNA 0.39 2 37725309 37725925

Neighbor

gene id symbol gene type direction distance location
XLOC_032180 tubgcp5 coding upstream 2561 37623693 ~ 37652517 (+)
XLOC_032179 slc9a7 coding upstream 54430 37529383 ~ 37600648 (+)
XLOC_032178 NA coding upstream 178977 37470116 ~ 37476101 (+)
XLOC_032177 gtpbp6 coding upstream 200168 37441789 ~ 37454910 (+)
XLOC_032176 BX324166.1 coding upstream 320115 37334559 ~ 37334963 (+)
XLOC_032182 herc2 coding downstream 21874 37752781 ~ 37847875 (+)
XLOC_032183 oca2 coding downstream 163313 37894220 ~ 38054851 (+)
XLOC_032184 AL935047.1 coding downstream 356588 38087495 ~ 38087611 (+)
XLOC_032185 NA coding downstream 627774 38358681 ~ 38360443 (+)
XLOC_032186 CR405707.1 coding downstream 646184 38377091 ~ 38377211 (+)
XLOC_032175 NA non-coding upstream 339169 37314337 ~ 37315909 (+)
XLOC_032172 NA non-coding upstream 404714 37184193 ~ 37250364 (+)
XLOC_032171 BX950870.1 non-coding upstream 664394 36990570 ~ 36990684 (+)
XLOC_032188 CR628341.3 non-coding downstream 787312 38518219 ~ 38590172 (+)
XLOC_032194 NA non-coding downstream 1222574 38953481 ~ 38955126 (+)

Expression


Co-expression Network