G1324541 (LOC106592662)


Basic Information

Item Value
gene id G1324541
gene name LOC106592662
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 72346031 ~ 72347252 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1512249
GGTGTCTGACGGGAGTTGACAGAAATCCAGTTAGTTGCATTTGATGATTTATTAAAAATGTCATTAGGAAGTTATTCATTTACATGGTGTGATAGCTGATACTTTGGTCGATCAAAAActatatttcacattttgttaataTTAAGACCAACATTCGTGGGAAAAAGTTGAGATTGTCCCGTCTTTCAAGAATCCCTGAGAACCAAAACAGCAACATGTTATCTCAGCAGAATATGGAAAAGAGCATGAGATCAGCTATAAAAAAAGCTACTtagcattttttaaattaaattgcTCGTaccttgtgggggggggggggagggggggggggggggtcagggggtTGAGAAACTGCGCTACACCACTACATAGGTCAATAGTACctaaagtcacacacacaaaaggaGTGTGTGTTCTGCCTGTAACGGTCTCAGCTTCCCCTATTCCAGGGTTTCCCAGGTGGCGGCCCGCGGGTGggttttatttattatatatatatatttctttgtgGAATTGTTATTGTTGGACATTAAAGATTGTtgaaacaccaggaaatcagctccaagtgattttaattgaagaaatctgttcccaagtattcccacgcataatggAGAGACACGTGTGAACGTATACAAATGTgaacaaggtttgaaatgattatgtttcgtcaaactatatctgtttgggcttcttgcggtcaatttgtgGTTTACAAATGAATTGTAATTGTGTTCCGGCCCCTCAACCATCCGTTCCAGAAAAGATcgtcccgcggctgaatctagttgatgatccctgccttATTCTGTCCTCTTCCAGGTAACACAGTGGCACACGCAGGTATCCATTCTTACACTCCCTCTGTtgtccttcctcctctctatGTCAGCAACACGTCTTCCTGTCTGTGATCACCGCTGGCCCGTTGATTGGTCGTGAGTTGGCTCGGAGCAGGACGCGGGGCGAGTCATTGTTGCTAGGGGCCTGTTGCCGGACGACAGTGCCGTTGCGCGCCAGCAGCTCGCGGGCCATCATCATGAAGGCATCGTCCACATTCTGGGCCTCCTTAGCTGAGGTCTCTAATGCTACCAGGATGCCTCTCTCCTCAGCCATACAGCATGCTTCCTGGAACAACACCTGACGCTCAGACTCCAGGTCAGACTTGT

Function

NR:

description
ras-related protein Rab-19-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1512249 True 1169 lncRNA 0.46 2 72346031 72347252

Neighbor

gene id symbol gene type direction distance location
LOC110490625 LOC106596128 coding downstream 30770 72306866 ~ 72315261 (-)
LOC110490622 LOC106595912 coding downstream 65029 72271178 ~ 72281002 (-)
LOC110499807 lsm8 coding downstream 76536 72265690 ~ 72269495 (-)
LOC110499794 LOC106609728 coding downstream 120906 72210976 ~ 72225125 (-)
LOC110490626 LOC106576575 coding downstream 153222 72162661 ~ 72192809 (-)
fgl2a fgl2 coding upstream 74317 72421569 ~ 72426957 (-)
LOC110531900 LOC106576463 coding upstream 134687 72481939 ~ 72493287 (-)
LOC110531910 gsap coding upstream 153162 72500414 ~ 72533138 (-)
LOC118938847 NA coding upstream 244410 72591662 ~ 72592173 (-)
LOC110499730 LOC106609820 coding upstream 387764 72735016 ~ 72737438 (-)
G1324502 NA non-coding downstream 83555 72261990 ~ 72262476 (-)
G1324498 NA non-coding downstream 84740 72236065 ~ 72261291 (-)
G1324499 NA non-coding downstream 85199 72235607 ~ 72260832 (-)
G1324464 typh non-coding downstream 85679 72240548 ~ 72260352 (-)
G1324465 typh non-coding downstream 90159 72240441 ~ 72255872 (-)
G1324550 NA non-coding upstream 14961 72362213 ~ 72362977 (-)
G1324558 NA non-coding upstream 34717 72381969 ~ 72382259 (-)
G1324560 NA non-coding upstream 42038 72389290 ~ 72389526 (-)
G1324561 LOC106599346 non-coding upstream 42867 72390119 ~ 72391119 (-)
G1324565 NA non-coding upstream 49113 72396365 ~ 72396690 (-)
G1324512 NA other downstream 9047 72335360 ~ 72336984 (-)
LOC110500989 LOC106576674 other downstream 195094 72022817 ~ 72150996 (-)
LOC118938840 LOC106576579 other downstream 423123 71841725 ~ 71923263 (-)
G1324569 NA other upstream 60169 72407421 ~ 72407769 (-)
G1324604 NA other upstream 133153 72480405 ~ 72481169 (-)
G1324805 NA other upstream 558197 72905449 ~ 72906351 (-)

Expression


Co-expression Network