G1324561 (LOC106599346)


Basic Information

Item Value
gene id G1324561
gene name LOC106599346
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 72390119 ~ 72391119 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1512273
GAATACAACATGCCATTGTCCTCCAAGGAGGAAATTCTTCACACAGGTCACACAAACAAATGAAAGGGAGACAAGCTTGGTTGGCTCATAGCTTACCTTTGCTCTTGCAGTCCAGCATAGGTTTGGGGAACATGTAGGTGTGGCACAAGGAGTTGGCATCAGGGTACTTCTTGATGGGAGGTGGTTTGGGCAGACTACCCTGCCCCTCCTGAGGTTTCTGCCCTGGCAGATGGCCCTCCCCATCCTCAGCACACAGCAGCTCTGGCCTCATCTTCTTCAGCTTCTGACCTCTCAGCGCGTCCGGCTCCGAACACTTGGCGTAGTTCCCTAGGTTACGGTTGCTGGGCACCTGCAGGGTCCTGACCAGACTATCCAGCGAGCACCGGCAGTCCCAGGGGTTGTCATAGAGACGCAGGTAGCGGAGGTTTGGCAAGGGCAACAGGTGCTCCTCAGAAGCTGTCTTCATCTGGTTGTGCTGAAGAAGCAGAGTAGTGAGCTGTCCCAGCCCTGCGAacgcctcctcctccaccatgtAGAGCTCATTCTGTTGTAGATCCAGACTCTTTAGGTTCTTGAACTGGGAGAAGGTGTTGTCTCTGAGCACCTGGATCTTGTTGCGGGCCAGCAGGAGGTGGTGGATGTCTTCAGGCCAGTGCTGTTGCACCCCGGTCAGCTGGCGGTCCTGACAGTCCAGGTATTTCTCTCCGGCCTCCATGTATTCCTTGCATTCAGAGGTTTGGCGTTTGACAGCATTGGCCCTGCCTTTACCCCGGGCCCTGCCCCTTTCTCTGTTCCGTCCACCCTTCCTGGGCTCAGTGGAcctgaggagcaggaggagcagcagAGCGCTGAGCAGCCGCATCCTGGGAGCTCCAATGCCACCACTGGGAGATGGGGGAGTGGCAAGACTGGAacaagagggagggaaggggagagggatggcCTTGTGCAATCAGAGATGACCTTGGGTTTCTGCTGGTGCCAGGGAAGGCTGGCTacag

Function

NR:

description
leucine-rich repeat-containing protein 17-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1512273 True 1001 lncRNA 0.57 1 72390119 72391119

Neighbor

gene id symbol gene type direction distance location
LOC110490625 LOC106596128 coding downstream 74858 72306866 ~ 72315261 (-)
LOC110490622 LOC106595912 coding downstream 109117 72271178 ~ 72281002 (-)
LOC110499807 lsm8 coding downstream 120624 72265690 ~ 72269495 (-)
LOC110499794 LOC106609728 coding downstream 164994 72210976 ~ 72225125 (-)
LOC110490626 LOC106576575 coding downstream 197310 72162661 ~ 72192809 (-)
fgl2a fgl2 coding upstream 30450 72421569 ~ 72426957 (-)
LOC110531900 LOC106576463 coding upstream 90820 72481939 ~ 72493287 (-)
LOC110531910 gsap coding upstream 109295 72500414 ~ 72533138 (-)
LOC118938847 NA coding upstream 200543 72591662 ~ 72592173 (-)
LOC110499730 LOC106609820 coding upstream 343897 72735016 ~ 72737438 (-)
G1324560 NA non-coding downstream 593 72389290 ~ 72389526 (-)
G1324558 NA non-coding downstream 7860 72381969 ~ 72382259 (-)
G1324550 NA non-coding downstream 27142 72362213 ~ 72362977 (-)
G1324541 LOC106592662 non-coding downstream 42867 72346031 ~ 72347252 (-)
G1324502 NA non-coding downstream 127643 72261990 ~ 72262476 (-)
G1324565 NA non-coding upstream 5246 72396365 ~ 72396690 (-)
G1324568 NA non-coding upstream 15776 72406895 ~ 72407159 (-)
G1324604 NA non-coding upstream 89286 72480405 ~ 72481169 (-)
G1324605 NA non-coding upstream 90092 72481211 ~ 72481462 (-)
G1324606 NA non-coding upstream 94253 72485372 ~ 72497281 (-)
G1324512 NA other downstream 53135 72335360 ~ 72336984 (-)
G1324464 typh other downstream 129767 72240548 ~ 72260352 (-)
LOC110500989 LOC106576674 other downstream 239182 72022817 ~ 72150996 (-)
LOC118938840 LOC106576579 other downstream 467211 71841725 ~ 71923263 (-)
G1324569 NA other upstream 16302 72407421 ~ 72407769 (-)
G1324805 NA other upstream 514330 72905449 ~ 72906351 (-)

Expression


Co-expression Network