G1324072 (LOC106594049)


Basic Information

Item Value
gene id G1324072
gene name LOC106594049
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 72510953 ~ 72519481 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1511589
CTGCATTCCAACCCAGCACTAAAACAGTGCTGacactgatctaagatcagtttaaCATTTCCCCCCCTAATGGTTAAGATTGGGATCTGGGGAggttaaactgatcctagatctgtctgTGCCCGAGGGCACCTTCCACCCAGAGTATCATGGCTGCTGTATCTTGTGACTCACCAGGCCTATGAGCGCCCTCTGCTGGCTATCCTCCTCCTGGAACAACGGAACCACTTTCTGGTCAAGATTCCAGCTGTCCACCATCGACAGAACTTGTTTAGTGTTCTCCTCAATGTGACGTAGATAGTTAGAAGCCTTCTTGTTCTTTGACTTCAGGGTAGCTAGCAGCTTGGTCCAGTCTGGCAGGTTCTGAGATGCTCTGTATCGTGGGTTTGGAACCGCCTCAAAGTACTTCATCTTTTCTGTGCTCCACTGCAGCTCTTCCCAATAACCCTGGAGACTCCTGGCCTGCAGCCAAACATCACCAAAAATCTAGTCAACACCAGATGTTTACTACGTTTACAGGTTGTACTAAATCAGTCCATTTGTTACGGTCATCTTGAGACCTCCTTGGAAACTACATGATTTATGGTAACGGGGTTCATACCACATCACATTAAATGAAATGCACTTGATTGTAACAAATGGTTCGTGTTTTGCCTTTAATTAAAGACGGCCTCCATCTACAGAATAATCACTGGGTATTTCAGTGTAAATAGCCCAGTTTATATAATAT

Function

NR:

description
gamma-secretase-activating protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1511589 True 730 lncRNA 0.45 4 72510953 72519481

Neighbor

gene id symbol gene type direction distance location
LOC110531894 LOC106598741 coding upstream 29512 72416050 ~ 72481441 (+)
LOC110518729 LOC106599346 coding upstream 106315 72381871 ~ 72404638 (+)
LOC110516399 LOC106592662 coding upstream 164037 72340081 ~ 72346916 (+)
LOC118938846 tsn8 coding upstream 175090 72322986 ~ 72335863 (+)
LOC110490623 LOC106597683 coding upstream 214649 72287164 ~ 72370434 (+)
LOC110515111 LOC106561326 coding downstream 31636 72551117 ~ 72734470 (+)
LOC110490361 LOC106609821 coding downstream 222712 72742193 ~ 72850175 (+)
LOC110499728 NA coding downstream 307032 72826513 ~ 72829520 (+)
LOC118938849 LOC106609835 coding downstream 652739 73172193 ~ 73254659 (+)
LOC110517131 LOC105024897 coding downstream 739042 73258523 ~ 73536948 (+)
G1324073 gsap non-coding upstream 1763 72504340 ~ 72509190 (+)
G1324076 NA non-coding upstream 9473 72489397 ~ 72501480 (+)
G1324070 NA non-coding upstream 28245 72481950 ~ 72482708 (+)
G1324049 NA non-coding upstream 54402 72421574 ~ 72456551 (+)
G1324046 NA non-coding upstream 95984 72414751 ~ 72414969 (+)
G1324084 NA non-coding downstream 5035 72524516 ~ 72524964 (+)
G1324085 NA non-coding downstream 6063 72525544 ~ 72526168 (+)
G1324108 NA non-coding downstream 35650 72555131 ~ 72555732 (+)
G1324112 NA non-coding downstream 44944 72564425 ~ 72564952 (+)
G1324115 NA non-coding downstream 48767 72568248 ~ 72568574 (+)
G1323962 NA other upstream 319790 72190423 ~ 72191163 (+)
G1322763 NA other upstream 1573808 70936225 ~ 70937145 (+)
G1322725 NA other upstream 1663009 70843945 ~ 70847944 (+)
G1322161 NA other upstream 2607295 69900944 ~ 69903658 (+)
G1324156 LOC106576365 other downstream 334085 72853566 ~ 72856022 (+)
G1324195 NA other downstream 341339 72860820 ~ 72865809 (+)
G1324240 NA other downstream 386229 72905710 ~ 72906089 (+)

Expression


Co-expression Network