XLOC_032185


Basic Information

Item Value
gene id XLOC_032185
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 38358681 ~ 38360443 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064905
ctctgtctctttgcTCTGCAtgtgGTTCTTGTGACGGTGTGGTGGTGTCTCCCTTTTTGAGTTAGTGAGAGCATGAACTCGGCCCGTTCAAATGAATGATAGACTATCCTCTTGTGGCTGATTATAGTAATGCAGATTGGAAGTGGAGCACACATATTAAAGCAAACACGGTGTACTGCATTAGAAAAAAAGGTAAAGGGTAAAGGATGCTGCAAGAAAACAGTCTGTGCTGTCAAAAAAGGTTTAGGCAACACAAGttaaattattttgtattcaCAATGAAACCTTACATTGTAAGAAATGTGCTTTTTGAGATaacttgaaattaaataaaaaaaaacacacactgaatAAAGTAATGCAGAAAAATTAAATGAGCTGAACAAAGACATTCGAAAAACAATGATGAAAATATTACAGTGTTCAACTGTTTTGAATATGTTTAGTCATTTTCATCATCTCCGTTCTTAGTCACTTTCATATTTACAAAGTATGCTACTGCCACTTTAAATGGTTTTCAGCTGCCATGTCCCTGCACAATGGATTAAATCCAAATCATGACATAACCAAACCACTTTTGATAAGAAAATGCATTTTCAGCTTTAGGATATGCAATCTATGggttttaataacaaaatgaaaacaacttTGTATCTCTCCATGATACAAACATAAATCTGCAATAATGACGTATATCAGAGTGACAGCTTCTCTACTGCACACTGGTGGAATTCCAGTTCAGAACCAGAAGTAGGATTCCAAGCTCTCACTCCGCCACTCAGGGGATTAAAGGTTTAAGGTCCATTGGCATGCCGTGCATTATTGTGTGATGGATGAGTAAAGTATATTGAAGTGGTTAACACTCGCCttacatgtattaaaataaagTCCTTCCGTGAGCCTGCAGCAAGAGTGACATGTCAAATAAATGTCAGTCGCCTGGTCTCCATTACAGATTTGTACAAAAGTCTTGTGATGTTTActaaagttgatttaaaaaaacgtATTATACAGTGTTTATATTCATCATTGTTATGCAACTAAAGCATGATCttgtgaaatataaataaacattaaaaaaaagaaaaacacattcatattttaaagaatggaTTTTACATACACCAGGCGACCTGCAGAAAAATAAGTGGTTTCCATTGTTGtttgtattcattatttatttttgtattgccTAAACAAACCCCTCATGTGAggatttctt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064905 True 1222 lncRNA 0.35 2 38358681 38360443

Neighbor

gene id symbol gene type direction distance location
XLOC_032184 AL935047.1 coding upstream 271070 38087495 ~ 38087611 (+)
XLOC_032183 oca2 coding upstream 303830 37894220 ~ 38054851 (+)
XLOC_032182 herc2 coding upstream 510806 37752781 ~ 37847875 (+)
XLOC_032181 cyfip1 coding upstream 627774 37655078 ~ 37730907 (+)
XLOC_032180 tubgcp5 coding upstream 706164 37623693 ~ 37652517 (+)
XLOC_032186 CR405707.1 coding downstream 16648 38377091 ~ 38377211 (+)
XLOC_032187 gabrb3 coding downstream 21514 38381957 ~ 38513578 (+)
XLOC_032188 CR628341.3 coding downstream 157776 38518219 ~ 38590172 (+)
XLOC_032189 atp10a coding downstream 266241 38626684 ~ 38730530 (+)
XLOC_032190 ube3a coding downstream 412933 38773376 ~ 38790064 (+)
XLOC_032178 NA non-coding upstream 882580 37470116 ~ 37476101 (+)
XLOC_032176 BX324166.1 non-coding upstream 1023718 37334559 ~ 37334963 (+)
XLOC_032175 NA non-coding upstream 1042772 37314337 ~ 37315909 (+)
XLOC_032172 NA non-coding upstream 1108317 37184193 ~ 37250364 (+)
XLOC_032194 NA non-coding downstream 593038 38953481 ~ 38955126 (+)
XLOC_032204 NA non-coding downstream 1009892 39370335 ~ 39378734 (+)
XLOC_032208 NA non-coding downstream 1172035 39532478 ~ 39541448 (+)

Expression


Co-expression Network