G1324749 (LOC107569940)


Basic Information

Item Value
gene id G1324749
gene name LOC107569940
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 72785464 ~ 72823893 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1512504
GACCAAAACGAACAAAAACAAAAAGTCTTCATAATAAAAGTCtttataatatatgcacaaattgttctggttagggttaggtaggtaCCTTGTAGCaggtagatgaggaggaggaggaggaggaagatgactgaaggttagggttaggtaggtaCCTTGTAGCaggtagaggaggaggaggaggaggaagatggctCTGGAGGTGACCTGGATCCACCATCTGAAGAAGAAGGGGAACAACACCACCCTGACGAGACCCTTCCTGGTCAGAGACGTCCAGGGAGACTCAGGCTTGGCCTTGGCAAAAGCAgaacCTCTCACTAGGTCCACATCAATGAGGTCTGCTTTCACATGGCCTGTCTTCTTTGGCTTGTTCCTCAGGCCCTTGATTTCTCTTTGTTCAACAGACTTCTCCCATATCTGTTGGTCATAAGCACCAATCTTCTTCTGGTACCACACCACAGCATCTCTGACTTTGGACGCCATTTACATGTCAGAGGTCACCAGCTGGGGCATTTTAGGCTGTAAAacggagagaacgagagagagagagaga

Function

NR:

description
PREDICTED: putative homeodomain transcription factor 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1512504 True 556 lncRNA 0.48 5 72785464 72823893

Neighbor

gene id symbol gene type direction distance location
LOC110499730 LOC106609820 coding downstream 48026 72735016 ~ 72737438 (-)
LOC118938847 NA coding downstream 193291 72591662 ~ 72592173 (-)
LOC110531910 gsap coding downstream 252326 72500414 ~ 72533138 (-)
LOC110531900 LOC106576463 coding downstream 292177 72481939 ~ 72493287 (-)
fgl2a fgl2 coding downstream 358507 72421569 ~ 72426957 (-)
LOC110490677 LOC106576365 coding upstream 31129 72855022 ~ 72916247 (-)
LOC118938848 NA coding upstream 86211 72910104 ~ 72914835 (-)
LOC110490803 LOC106591178 coding upstream 135323 72959216 ~ 73142970 (-)
LOC118938934 LOC106594503 coding upstream 513132 73337025 ~ 73338361 (-)
mgst1.1 LOC106590880 coding upstream 1060390 73884283 ~ 73902168 (-)
G1324730 NA non-coding downstream 25335 72759166 ~ 72760129 (-)
G1324706 NA non-coding downstream 70229 72714641 ~ 72715235 (-)
G1324665 NA non-coding downstream 150898 72633533 ~ 72634566 (-)
G1324662 NA non-coding downstream 158108 72625943 ~ 72627356 (-)
G1324661 NA non-coding downstream 161601 72623540 ~ 72623863 (-)
G1324790 NA non-coding upstream 45415 72869308 ~ 72869829 (-)
G1324792 NA non-coding upstream 48338 72872231 ~ 72872570 (-)
G1324793 NA non-coding upstream 48986 72872879 ~ 72873375 (-)
G1324794 NA non-coding upstream 50790 72874683 ~ 72875310 (-)
G1324604 NA other downstream 304295 72480405 ~ 72481169 (-)
G1324569 NA other downstream 377695 72407421 ~ 72407769 (-)
G1324512 NA other downstream 448480 72335360 ~ 72336984 (-)
G1324805 NA other upstream 81556 72905449 ~ 72906351 (-)
G1325752 NA other upstream 851445 73675338 ~ 73677653 (-)
G1325780 NA other upstream 910788 73734681 ~ 73735097 (-)
G1325863 LOC106584099 other upstream 1178554 74002447 ~ 74002749 (-)
LOC110513406 LOC106576618 other upstream 1344250 74167198 ~ 74213128 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00006520 phtf2 coding CM030134.1 CM030134.1 7593287 ~ 7621049 (-)