G1324224


Basic Information

Item Value
gene id G1324224
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 72871467 ~ 72874048 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1511830
atggggttggtttgggttggtgaactgagcctcagaaccagctggctgagtgctgtcctgaggctctatggggttggtttgggttggtgaactgagcctcagaaccagctggctgaggggactcttctcttgtttcatctcttgacaCTGCAGAGCTGTGCgatggaatgttttggggtcacttgtttttagatggttggAAAATGTGATGTCTCTATTTGAATGAGGAGGGGGTATTGGTCCATTTCTGCTCTACATGCGTTATTTTgagtttttctttgcacttgcaaCACAGTCTGGCAAAACTCAGAAAGCAgtatttcaattggatgtttgtcccatttggtgaatTAATTATTAGATGATGGACCCCGTACTTCACTGCCATGTAGAGCAACTGGTTCAACAACTGATGAGCTTTTTGTTGTTGCCAGATTCTAATTGAAATTTAGATTTgaatgttccttttaatggcatagaatgctcttccTGCTTCGTCTCtcagctccttcacagccatgtgacagaacctgtgattaacggtcagagcccaggtctgacagaacctgtgattaacggtcagagcccaggtctgacagaacctgtgattaacggtcagagcccaggtctgacagaacctgtgattaacggtcagagcccaggtctgacagaacctgtgattaacggtcagagcccaggtctgacagaacctgtgattaacggtcagagcccaggtctgacagaacctgtggttaacggtcagagcccaggtctgacagaacctgtggttaacggtcagagcccaggtctgacagaacctgtgattaacggtcagagcccaggtctgacagaacctgtgattaacggtcagagcccaggtctgacagaacccgTGTATatacggtcagagcccaggtctgacagaacccgtggataacggtcagagcccaggtctgacagaacccgTGGAAacggtcagggcccaggtctgacagaaccggTGCAgatgatctaggtgctgctgtacctcctccttagtgggagacagcagaccctccttagtgggagacagtagcaccaggtcatctgtctacagcagaacctccttagtgggagacagcagcaccaggtcatatGTCTACAGCAGaacctccttagtgggagacagcagcaccaggtcatctgtctacagcagaacctccttagtgggagacagcagaccctccttagtgggagacagcagaccctccttagtgggagacagcagcaccaggtcatctgtctacagcagaacctccttagtgggagacagcagaccctccttagtgggagacagcagcaccaggtcatctgtctacagcagaacctccttagtgggagacagcagcaccaggtcatctgtctacagcagaacctccttagtgggagacagcagcaccaggtcatctgtctacagcagaacctccttagtgggagacagcagcaccaggtcatctgtctacagcagaacctccttagtgggagacagcagcaccaggtcatctgtctacagcagaccctccttagtgggagacagcagcaccaggtcatctgtctacagcagaacctccttagtgggagacagcagcaccaggtcatctgtctacagcagaacctccttagtgggagacagcagaccctccttagtgggagacagcagcaccaggtcatctgtctacagcagaacctccttagtgggagacagcagaccctccttagtgggagacagcagcaccaggtcatctgtctacagcagaccctccttagtgggagacagcagcaccaggtcatctgtctacagcagaacctccttagtgggagacagcagcaccaggtcatctgtctacagcagaacctccttagtgggagacagcagcaccaggtcatctgtctacagcagaacctccttagtgggagacagcagcaccaggtcatctgtctacagcagaacctccttagtgggagacagcagcaccaggtcatctgtctacagcagaacctccttagtgggagacagcagcaccaggtcatctgtctacagcagaacctccttagtgggagacagcagcaccaggtcatctgcgtacagcagacacttgatatcagtgttgtgtagggtgataccaggtgctgccgattcttctaatgtttttgccaattcattaatgtagatgttaaacagtgttggacttattggacagccctgtttcactccacgtccctgagagaagatgtctgtttgcttgttgccaaATTTAACagcacatttgtttttagtgtacaCTGATTAAATAACATCATATATTTTCCCTCCA

Function

NR:

description
extensin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1511830 True 2354 lncRNA 0.51 3 72871467 72874048

Neighbor

gene id symbol gene type direction distance location
LOC110490361 LOC106609821 coding upstream 21292 72742193 ~ 72850175 (+)
LOC110499728 NA coding upstream 41947 72826513 ~ 72829520 (+)
LOC110515111 LOC106561326 coding upstream 136997 72551117 ~ 72734470 (+)
LOC110531894 LOC106598741 coding upstream 390026 72416050 ~ 72481441 (+)
LOC110518729 LOC106599346 coding upstream 466829 72381871 ~ 72404638 (+)
LOC118938849 LOC106609835 coding downstream 298172 73172193 ~ 73254659 (+)
LOC110517131 LOC105024897 coding downstream 384475 73258523 ~ 73536948 (+)
LOC118936425 lmo3 coding downstream 803036 73677084 ~ 73803344 (+)
LOC118938850 NA coding downstream 820791 73694833 ~ 73698637 (+)
LOC118938852 NA coding downstream 1153042 74027090 ~ 74132032 (+)
G1324207 NA non-coding upstream 290 72801609 ~ 72871177 (+)
G1324222 NA non-coding upstream 1384 72869208 ~ 72870083 (+)
G1324219 NA non-coding upstream 36757 72834435 ~ 72834710 (+)
G1324197 NA non-coding upstream 93534 72777465 ~ 72777933 (+)
G1324252 NA non-coding downstream 61064 72935112 ~ 72936085 (+)
G1324263 NA non-coding downstream 76817 72950865 ~ 72951079 (+)
G1324269 NA non-coding downstream 79909 72953957 ~ 72954167 (+)
G1324271 NA non-coding downstream 80752 72954800 ~ 72955027 (+)
G1324264 NA non-coding downstream 81784 72955832 ~ 72956759 (+)
G1324195 NA other upstream 5658 72860820 ~ 72865809 (+)
G1324156 LOC106576365 other upstream 15445 72853566 ~ 72856022 (+)
G1323962 NA other upstream 680304 72190423 ~ 72191163 (+)
G1324240 NA other downstream 31662 72905710 ~ 72906089 (+)
G1325337 NA other downstream 982296 73856344 ~ 73856674 (+)
G1325481 NA other downstream 1364291 74238339 ~ 74240169 (+)

Expression


Co-expression Network