XLOC_032190 (ube3a)


Basic Information

Item Value
gene id XLOC_032190
gene name ube3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 38773376 ~ 38790064 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062891
GGATCGCTCTCCGTGTTTGCCTCAGTTGATCAAGATGGCCGCGAATATTTTGTGGAGGGGTTGGAGTTGAATACACGCCGCACTAGAAGCGATTGTGATGTTGAGAGACCAGATTCATTCGTCAGCATCAGAACACCTCCAAAAGATTGCTACCTGACAACCTTTGGGTCTCTTTGAGTTCAGAGCCGTAGAAGAGTGTGATATTGGAAACTTTAAAGCAAGTCTAATGAAGCGAGCGGCTGCAAAGCATTTAATTGAGCGCTACTACCACCAGTTAACAGAGGGCTGTGGAAATGAGGCCTGCACGAATGAGGCTTGTGGCTCTTCTCCGGGTTTCCAGCGCATGGATAACAATGCAGCAGCCATCAAGGCCCTGGAGTTATATAAGAATAATGCCAAACTGTGTGATCCTCATCCCTCTAAGAAAGGAGCCAGTTCAGCCTTCCCGGAGAACAGTGCCAAAGGAGCTCACAACTTCTCTGCTTGCAGCAACGGAAAGATGAACCATAAGGACCTGCCACCCACAAGGGAGGACTTTAGAGaTCTGAATTTCTTGACTGAGGATAAGGTGTATGAAATCCTGAGCATCTGCAGTGAGACAGAGGACTATTCTCCTCTAATCCGTGTTATTGGTCGGGTTTTCTCAAGTGCAGAGAGTCTAGTCCAGAGTTTCCGCAAAGCAAAACAACACACCAAGGAAGAGCTCAAGTCCCTTCAGGCCAAGGATGAAGACAAAGATGAAGATGAGAAAGAAACGGCTTCTGGTTCATCCACAGCAATGGAGGTGGAACCAGAAGCTTCAGCATCAAGTGGAGACGGGTCATCTCATGGGGAGAACAACGTCCAAAAGTTGAGTCCTGTAGAAGTTTCTGTAGACATTGATGCTGTAAGAAGAGTGTACGACAGATTATTATCGAATGAGAAGATTGAGGCAGCTTTCCTCAACGCGTTAGTCTACTTGTCGCCCAACGTAGAGTGTGACCTCACCTATCACAATGTGTACGCCGCTGACCCTAATTACCTGAACGTCTTCATCATTGTGATGGAGAACAGTAACCTCCACAGTCCCGAATACTTAGAAATCGCCTTGCCACAGTTCTGCAAGGCCATGAGCAAGCTACCTCTTCCGGCTCTGGCCAAGCTTGCACGGTTGTGGTCGCAGTACGGTGTGGACCAGATCCGACGTTTGGTCGAGACTTTCCAGCAGCTTATTACCTACACGGTCATCAGCAACGAGTTCAGCAGTGATAACCTAGTCAATGAGGATGATGGTGTGGTGGCAGCCACCAAGTGCTTGAAAATCGTCTACTATGCAAACGTGCTGGGCGGCGACCTAGACACGGATCACAATGAGGAGGACGACGATGAACCGATCCCTGAGTCCAGCGAGCTGACGCTGCAGGAGCTGCTGGGAGAGGAGAGACGCAATAAAAAAGGCCCTCGAGTGGATCCGCTAGAGACAGAAATGGGCATCCGTGCCTCGGACTGTCGAAAACCCCTCATCCCATTCGAGGAGTTCATCAATGAACCACTCAATGAGGTGCTGGAAATGGACAAAGACTATACCTTCTTCAAGGTGGAGACAGAGAGCAAGTTCTCCTTTATGACCTGCCCTTTCATACTTAACGCTGTGACTAAGAATCTGGGCCTGTACTATGACAACCGGATCCGCATGTATAGCGAGCGCAGGATTACTGCCCTCTATAGTTTGGTGCAAGGACAGCAACTAAACCCTTATCTGCGTCTCAAAGTGCGCAGAGACCACATCATAGACGATGCTCTTGTCAGGTTGGAGATGATTGCCATGGAAAACCCAGCAGACCTGAAGAAACAACTGTATGTGGAGTTTGAGGGTGAGCAAGGTGTAGATGAGGGAGGAGTATCCAAAGAATTCTTTCAACTGGTTGTAGAGGAGATCTTCAACCCAGATATAGGCATGTTTACCTATGATGAAAGCACAAAACTTTTCTGGTTCAACCCTTCATCATTTGAGAATGAAGGCCAGTTCACTTTGATAGGCATCGTCCTGGGCCTAGCTATCTACAATAACTGCATTCTGGATGTGCATTTCCCTATGGTGATTTACAGAAAACTAATGGGAAAGAAAGGAACGTTTCGAGACCTTGCAGACTCTCATCCGGTTCTTTTTCAGAGTCTGAAAGATCTCATGGAGTATGAAGGCAATGTTGAAGAAGACATGATGATTACCTTCCAGATCTCGCAAACAGACCTGTTTGGAAACCCATTAATGTACGATTTAAAGGAAAGCGGTGATAAAATCCCTGTTACCAATGAGAACAGAAAGGATTTTGTGGCGCTCTATGCAGAGTACATGCTGAACAAAAGTGTGGAGAAACAGTTTAAGGCCTTTAGAAGAGGATTCCACATGGTCACTAATGAGTCTCCACTGAAATATCTGTTTCGACCGGAGGAGattgagctgcttatatgtggcaGCAGGaaCCTTGACTTCCAAGCACTTGAAGAAAGCACCGAATATGATGGAGGATACAACAAAGACTCGCGCATTATTAGGGATTTCTGGGAGACGGTGCACTCATTTGAGCAGGAGAAGAAGAGACTGTTTCTCCAGTTCACCACTGGCACAGATAGAGCTCCAGTTGGAGGTTTAGGCAAACTCAAGATGATTATTGCCAAAAATGGTCCCGACTCAGACAGGTTACCCACCTCTCATACCTGCTTCAACGTGCTGCTCCTCCCCGAATACTCCACCGTGGAGAAACTTAAAGAGAGACTCCTTAAAGCCATCACTTACGCCAAAGGCTTCGGCATGCTCTGAGGCTAAAGAACTCACTCTAGCCCTCAGAGGAGAATCAGCTACATCCACAACTAATCGTAAATATCAAGTTTAAATGtaaggcaacatgaaatgggttCAAAATGGGGAAGTTCTGGTGACCGTGTGCCTGTGCCTAAAAAGTAGATAAAACCACACTGGACTCAtggctctctctctttctctgtctctctctctctccctcttatGTAAGTGTTCAGGTTCCCTTTTTTTTGTATGCACTGAGATATAGCGTTATTTATTTTAAGGGATGAAATCTCTTGTCATGTCTGCCAGGAATTCCACACTTTTGTTGCTTCATAGTCATAAAAACAGGAGGGACGGTTGGAAGTTTTCAACGGCTGCAGGACTGATCACCAACTAAACTTAATAAAACAAGATCAAAGGGAGGAGGTGGAACTTTGTTGTATTACGGTTGAACTGTGAAAGTGCACTTAACTCTATTCAGaatgtctttgttttatttttgatttttttttgtcaacccTTAGGcttttctttttagttttggCTCGTGCTTCATTGGTCTTCCCTAGTTCGTTCACATTTGCGGCAATGTTTGAAAGGTACAGAGCAGCCTCAGTCTCAGTTTGGCATCCAGGAATCTGTATTTATTGAGAATCTGCATTGTTTGTAATGCCGTCGTGCTGCTCGTTTATGGCCAGTGTTCTGCATTTCGCTTCAGATTCGACTTTTTCTCTCCCTCACACACAACTGACCGGTTTGCTAAAGATCACAGTGGTGCACTCCTGCCGAAAACGAGTAGTGTTATAAAGGAGAGATCTCAACTTCCTATAAAACTCTGTCAGAAGCTTCCTactagtgtttgtttgttttgttatctgTCTTGTTTTAATTCAAGATGGCAGACTTTTAGTCCATGAATGCTAATTGACGGTGCCCCATGAAGAAAGCGTTTTAGTtgcgcttttttttttctttgctctgcaCAGTATCTGGCCCGATACATTTGGATGAAAATGAGGGGAAATTGGCACAAGTCGTACCACTATCTTGTCGTGCCAAACAGTTATGCTGAGAATCGCCGCTCCGATTTTGTTCAGGCGTAGCTGGTAATCCAGATTAGTGATGCcctgttcacttttttttttttttttttgtttattttgtttttccttaTTCCCTCTTGCAGATTAAATGTGACTGTGGTTTGATCCACTGCTGATGGCGCTAACATAAAAGGGGGAAACAGAACTTGATATTGAGAATGACAACATTTGATTGTTTCAAGTTATtcttaaataaattcaaaactgAAAAACAAA
>TCONS_00062892
CGAATATTTTGTGGAGGGGTTGGAGTTGAATACACGCCGCACTAGAAGCGATTGTGATGTTGAGAGACCAGATTCATTCGTCAGCATCAGAACACCTCCAAAAGATTGCTACCTGACAACCTTTGGGTCTCTTTGAGTTCAGAGCCGTAGAAGAGTGTGATATTGGAAACTTTAAAGCAAGTCTAATAAAGGAGCCAGTTCAGCCTTCCCGGAGAACAGTGCCAAAGGAGCTCACAACTTCTCTGCTTGCAGCAACGGAAAGATGAACCATAAGGACCTGCCACCCACAAGGGAGGACTTTAGAGaTCTGAATTTCTTGACTGAGGATAAGGTGTATGAAATCCTGAGCATCTGCAGTGAGACAGAGGACTATTCTCCTCTAATCCGTGTTATTGGTCGGGTTTTCTCAAGTGCAGAGAGTCTAGTCCAGAGTTTCCGCAAAGCAAAACAACACACCAAGGAAGAGCTCAAGTCCCTTCAGGCCAAGGATGAAGACAAAGATGAAGATGAGAAAGAAACGGCTTCTGGTTCATCCACAGCAATGGAGGTGGAACCAGAAGCTTCAGCATCAAGTGGAGACGGGTCATCTCATGGGGAGAACAACGTCCAAAAGTTGAGTCCTGTAGAAGTTTCTGTAGACATTGATGCTGTAAGAAGAGTGTACGACAGATTATTATCGAATGAGAAGATTGAGGCAGCTTTCCTCAACGCGTTAGTCTACTTGTCGCCCAACGTAGAGTGTGACCTCACCTATCACAATGTGTACGCCGCTGACCCTAATTACCTGAACGTCTTCATCATTGTGATGGAGAACAGTAACCTCCACAGTCCCGAATACTTAGAAATCGCCTTGCCACAGTTCTGCAAGGCCATGAGCAAGCTACCTCTTCCGGCTCTGGCCAAGCTTGCACGGTTGTGGTCGCAGTACGGTGTGGACCAGATCCGACGTTTGGTCGAGACTTTCCAGCAGCTTATTACCTACACGGTCATCAGCAACGAGTTCAGCAGTGATAACCTAGTCAATGAGGATGATGGTGTGGTGGCAGCCACCAAGTGCTTGAAAATCGTCTACTATGCAAACGTGCTGGGCGGCGACCTAGACACGGATCACAATGAGGAGGACGACGATGAACCGATCCCTGAGTCCAGCGAGCTGACGCTGCAGGAGCTGCTGGGAGAGGAGAGACGCAATAAAAAAGGCCCTCGAGTGGATCCGCTAGAGACAGAAATGGGCATCCGTGCCTCGGACTGTCGAAAACCCCTCATCCCATTCGAGGAGTTCATCAATGAACCACTCAATGAGGTGCTGGAAATGGACAAAGACTATACCTTCTTCAAGGTGGAGACAGAGAGCAAGTTCTCCTTTATGACCTGCCCTTTCATACTTAACGCTGTGACTAAGAATCTGGGCCTGTACTATGACAACCGGATCCGCATGTATAGCGAGCGCAGGATTACTGCCCTCTATAGTTTGGTGCAAGGACAGCAACTAAACCCTTATCTGCGTCTCAAAGTGCGCAGAGACCACATCATAGACGATGCTCTTGTCAGGTTGGAGATGATTGCCATGGAAAACCCAGCAGACCTGAAGAAACAACTGTATGTGGAGTTTGAGGGTGAGCAAGGTGTAGATGAGGGAGGAGTATCCAAAGAATTCTTTCAACTGGTTGTAGAGGAGATCTTCAACCCAGATATAGGCATGTTTACCTATGATGAAAGCACAAAACTTTTCTGGTTCAACCCTTCATCATTTGAGAATGAAGGCCAGTTCACTTTGATAGGCATCGTCCTGGGCCTAGCTATCTACAATAACTGCATTCTGGATGTGCATTTCCCTATGGTGATTTACAGAAAACTAATGGGAAAGAAAGGAACGTTTCGAGACCTTGCAGACTCTCATCCGGTTCTTTTTCAGAGTCTGAAAGATCTCATGGAGTATGAAGGCAATGTTGAAGAAGACATGATGATTACCTTCCAGATCTCGCAAACAGACCTGTTTGGAAACCCATTAATGTACGATTTAAAGGAAAGCGGTGATAAAATCCCTGTTACCAATGAGAACAGAAAGGATTTTGTGGCGCTCTATGCAGAGTACATGCTGAACAAAAGTGTGGAGAAACAGTTTAAGGCCTTTAGAAGAGGATTCCACATGGTCACTAATGAGTCTCCACTGAAATATCTGTTTCGACCGGAGGAGattgagctgcttatatgtggcaGCAGGaaCCTTGACTTCCAAGCACTTGAAGAAAGCACCGAATATGATGGAGGATACAACAAAGACTCGCGCATTATTAGGGATTTCTGGGAGACGGTGCACTCATTTGAGCAGGAGAAGAAGAGACTGTTTCTCCAGTTCACCACTGGCACAGATAGAGCTCCAGTTGGAGGTTTAGGCAAACTCAAGATGATTATTGCCAAAAATGGTCCCGACTCAGACAGGTTACCCACCTCTCATACCTGCTTCAACGTGCTGCTCCTCCCCGAATACTCCACCGTGGAGAAACTTAAAGAGAGACTCCTTAAAGCCATCACTTACGCCAAAGGCTTCGGCATGCTCTGAGGCTAAAGAACTCACTCTAGCCCTCAGAGGAGAATCAGCTACATCCACAACTAATCGTAAATATCAAGTTTAAATGtaaggcaacatgaaatgggttCAAAATGGGGAAGTTCTGGTGACCGTGTGCCTGTGCCTAAAAAGTAGATAAAACCACACTGGACTCAtggctctctctctttctctgtctctctctctctccctcttatGTAAGTGTTCAGGTTCCCTTTTTTTTGTATGCACTGAGATATAGCGTTATTTATTTTAAGGGATGAAATCTCTTGTCATGTCTGCCAGGAATTCCACACTTTTGTTGCTTCATAGTCATAAAAACAGGAGGGACGGTTGGAAGTTTTCAACGGCTGCAGGACTGATCACCAACTAAACTTAATAAAACAAGATCAAAGGGAGGAGGTGGAACTTTGTTGTATTACGGTTGAACTGTGAAAGTGCACTTAACTCTATTCAGaatgtctttgttttatttttgatttttttttgtcaacccTTAGGcttttctttttagttttggCTCGTGCTTCATTGGTCTTCCCTAGTTCGTTCACATTTGCGGCAATGTTTGAAAGGTACAGAGCAGCCTCAGTCTCAGTTTGGCATCCAGGAATCTGTATTTATTGAGAATCTGCATTGTTTGTAATGCCGTCGTGCTGCTCGTTTATGGCCAGTGTTCTGCATTTCGCTTCAGATTCGACTTTTTCTCTCCCTCACACACAACTGACCGGTTTGCTAAAGATCACAGTGGTGCACTCCTGCCGAAAACGAGTAGTGTTATAAAGGAGAGATCTCAACTTCCTATAAAACTCTGTCAGAAGCTTCCTactagtgtttgtttgttttgttatctgTCTTGTTTTAATTCAAGATGGCAGACTTTTAGTCCATGAATGCTAATTGACGGTGCCCCATGAAGAAAGCGTTTTAGTtgcgcttttttttttctttgctctgcaCAGTATCTGGCCCGATACATTTGGATGAAAATGAGGGGAAATTGGCACAAGTCGTACCACTATCTTGTCGTGCCAAACAGTTATGCTGAGAATCGCCGCTCCGATTTTGTTCAGGCGTAGCTGGTAATCCAGATTAGTGATGCcctgttcacttttttttttttttttttgtttattttgtttttccttaTTCCCTCTTGCAGATTAAATGTGACTGTGGTTTGATCCACTGCTGATGGCGCTAACATAAAAGGGGGAAACAGAACTTGATATTGAGAATGACAACATTTGATTGTTTCAAGTTATtcttaaataaattcaaaactg
>TCONS_00062893
GAATATTTTGTGGAGGGGTTGGAGTTGAATACACGCCGCACTAGAAGCGATTGTGATGTTGAGAGACCAGATTCATTCGTCAGCATCAGAACACCTCCAAAAGATTGCTACCTGACAACCTTTGGGTCTCTTTGAGTTCAGAGCCGTAGAAGAGTGTGATATTGGAAACTTTAAAGCAAGTCTAATAAAGGAGCCAGTTCAGCCTTCCCGGAGAACAGTGCCAAAGGAGCTCACAACTTCTCTGCTTGCAGCAACGGAAAGATGAACCATAAGGACCTGCCACCCACAAGGGAGGACTTTAGAGaTCTGAATTTCTTGACTGAGGATAAGGTGTATGAAATCCTGAGCATCTGCAGTGAGACAGAGGACTATTCTCCTCTAATCCGTGTTATTGGTCGGGTTTTCTCAAGTGCAGAGAGTCTAGTCCAGAGTTTCCGCAAAGCAAAACAACACACCAAGGAAGAGCTCAAGTCCCTTCAGGCCAAGGATGAAGACAAAGATGAAGATGAGAAAGAAACGGCTTCTGGTTCATCCACAGCAATGGAGGTGGAACCAGAAGCTTCAGCATCAAGTGGAGACGGGTCATCTCATGGGGAGAACAACGTCCAAAAGTTGAGTCCTGTAGAAGTTTCTGTAGACATTGATGCTGTAAGAAGAGTGTACGACAGATTATTATCGAATGAGAAGATTGAGGCAGCTTTCCTCAACGCGTTAGTCTACTTGTCGCCCAACGTAGAGTGTGACCTCACCTATCACAATGTGTACGCCGCTGACCCTAATTACCTGAACGTCTTCATCATTGTGATGGAGAACAGTAACCTCCACAGTCCCGAATACTTAGAAATCGCCTTGCCACAGTTCTGCA

Function

symbol description
ube3a Predicted to enable ligase activity and ubiquitin protein ligase activity. Predicted to be involved in protein K48-linked ubiquitination. Predicted to act upstream of or within ubiquitin-dependent protein catabolic process. Predicted to be located in cytosol and nucleus. Predicted to be part of proteasome complex. Human ortholog(s) of this gene implicated in Angelman syndrome. Orthologous to human UBE3A (ubiquitin protein ligase E3A).

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0070936 protein K48-linked ubiquitination biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0000502 proteasome complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0016874 ligase activity molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG:

id description
ko04120 Ubiquitin mediated proteolysis
ko05203 Viral carcinogenesis
ko05165 Human papillomavirus infection
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-041114-190 Predicted to enable ligase activity and ubiquitin protein ligase activity. Predicted to be involved in protein K48-linked ubiquitination. Predicted to act upstream of or within ubiquitin-dependent protein catabolic process. Predicted to be located in cytosol and nucleus. Predicted to be part of proteasome complex. Human ortholog(s) of this gene implicated in Angelman syndrome. Orthologous to human UBE3A (ubiquitin protein ligase E3A).

Ensembl:

ensembl_id ENSDARG00000055737

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062891 False 4104 mRNA 0.45 11 38773376 38790064
TCONS_00062892 False 3858 mRNA 0.45 11 38773417 38790055
TCONS_00062893 True 865 processed_transcript 0.46 4 38773418 38782158

Neighbor

gene id symbol gene type direction distance location
XLOC_032189 atp10a coding upstream 42846 38626684 ~ 38730530 (+)
XLOC_032188 CR628341.3 coding upstream 183204 38518219 ~ 38590172 (+)
XLOC_032187 gabrb3 coding upstream 259798 38381957 ~ 38513578 (+)
XLOC_032186 CR405707.1 coding upstream 396165 38377091 ~ 38377211 (+)
XLOC_032185 NA coding upstream 412933 38358681 ~ 38360443 (+)
XLOC_032191 stk35l coding downstream 55612 38845676 ~ 38861349 (+)
XLOC_032192 bin2b coding downstream 89897 38879961 ~ 38894366 (+)
XLOC_032193 slc48a1b coding downstream 106094 38896158 ~ 38902498 (+)
XLOC_032194 NA coding downstream 163417 38953481 ~ 38955126 (+)
XLOC_032195 prss60.1 coding downstream 295905 39085969 ~ 39091330 (+)
XLOC_032184 AL935047.1 non-coding upstream 685765 38087495 ~ 38087611 (+)
XLOC_032178 NA non-coding upstream 1297275 37470116 ~ 37476101 (+)
XLOC_032204 NA non-coding downstream 580271 39370335 ~ 39378734 (+)
XLOC_032208 NA non-coding downstream 742414 39532478 ~ 39541448 (+)
XLOC_032209 AL954698.2 non-coding downstream 876283 39666347 ~ 39667572 (+)
XLOC_032210 AL954698.1 non-coding downstream 910136 39700200 ~ 39717558 (+)

Expression


Co-expression Network