XLOC_032192 (bin2b)


Basic Information

Item Value
gene id XLOC_032192
gene name bin2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 38879961 ~ 38894366 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062897
TAGCCACCATTTAAACTAAAAAATGTCGTGGttaaatatatttgcaaaacCATATAACTTATGGTTAGGGCTACCGCTGTCAGCCAATaggtattttgttattttaaaattaaagcatTTTATGTTAAGGCCAATTAAAGTAACGTCAGTAGTTACTATTTTTAACGTACCCCACGGCTAAATTAACAGGAAACACTGATGACTAAAGTTGATGATGCAGTCGCGCGTCGATGACAATTTACCAAACACGTTTGGGCACGACGGAGGAATGTTGCAAAATTGGCTAGTCAGCGTCCTGCCGTGACTTGTGGTAACTTTATAGAAGGAAGCGCCGAGACATCAGAGAGAAGATCGCCTGTGTGCCAACTAATCTGAGCTGAAGATGGCTGACGGAAAACTAGGTACCAACATTGGGGGTAACATTGGCGCGGGagctggcatcctggccaaacgCTTTCAGAAATCAATGAATCGAGCACAAGAGAAGGTCCTGCAGAAGCTGGGAAAAACCATGGAGACCAAAGATGAGCAGTTTGAGGAGTGCTCTGCCAATCTGAACAAACAGCAGACAGATGGCATCAGACTCTACAAGGACGTTAAAGCTTACTACAATGCGGTTAAAGTGATGCATGAATCATCCAAACGGCTGTCCCAGACTCTTAAAGATATCTATGAACCAGACTGGCATGGTGTAGAAGATCTTACTGTCATAATGGAGAGTGAGGATCTTTTGTGGAATGACTACGAGGAGAAGCTAAACGATCAAGTCGTTCGAACAATGGAGAACTACACCGCACAGTTCCAAGATGTCAAAGAAAGAGTAGCTAAACGAGGAAGGAAACTAGTTGATTATGATTCGACCCGTCATCATCTGGAGGCGTTACAAAGCGCCAAGAAGAGAGATGATGCCAAAGTAAATAAGGCTGAGGAAGAGTTTAACAAAGCCCAGGAGGTATTTGAAGACATTAACAAAGAGTTGAGAGAGGAACTGCCTGTTCTCTATCAAAGTCGTATCAGTTGCTATGTCACCATGTTCCAGAACATCTCAAACCTGCGGGATGTTTTCTACAAGGAGATGAGTATGTTGAATCACAACATTTATAATATGATGAAGAAGCTTGAAGATCAGCACTCCACCAAACCCTTCATAGTTAAAGGACTAAACagTTCTAAATCAAAGAAGAGAAAATCTGTTACGATCTCTGCACCGATCCCCTGTAACACCGCCTTCCCTACTGATCATCCGGCTATGAGCAAGCTCAGCATGCCCGACACCctcgcacacacagacacacgcatacacactccCTCAAAGAGCACAGAAATATCAGAATCCGAGTCAGACTCTTTTGACAGTGAACCCAACACCCCCAAACGGCAGTCTTTGTGTTCAGTTCGTTCTGATGGAGCCAGCGAAAACACATCTGGGAGTACCACTGATGAGACCGTACAAGCAAACGGTCAGGAACATCAAGATTCAGTGTCTGTTGAGCGCCAGGAAGAGGAGGAATCTAAATTATCACAAGCAGCATCATCAGAGGACGCCCATAATGCATCAACAGATGGAGACGATCAGACTAAACTTTTATCGGCCGATGAGGACAAACCTGCACCCATCCCCACTCCTCGAAGATCCAGCACATCAAAGAAGGATGAAGGAGAGacaaatgaaaatacaaaaggaTCCAGTGAAGATGTGAAGGAACAAAAGACGGAGTATGAAAATCCTCCAGGTTTCCTCTATAAGGCTGTTGCTCTGAAGAGTCAAGACTCAGATGAAGGTGTGCTGCTTCTGTTTGAAAAGGGAGATCTGATCCTTACGTTTGTAGATGATGAAGAAGAAAAGCCTGACGGCTTTGTGTGGGGAGTGAGAGAGCAGGACTGGATCCAGTACAAGGATCTGACTCTTCTCTCCGGCATCGTGGAGGAGTCTGAGATCGAGCGCATCACCTCATGAAGGGCGCCATGTGAACCCAAAGCCCCTTCAGTGCCTGTGGAGTGTCCTCATGACTGGATGTTGTAATATGAACTCTGTCTGCACTGTGCTCTAGACTTGAAAGACACTCTTGTCTTGTCATTTGTTGTCTTTACAAACTTCCTGTTGCGGACTCGACCCTGCAGACAGTCTTAGTCCTTTATTTTCAGATCTTCTCTGACTTTTATAGATCCTAATAACAATCACTAGATTTACACATCATTTATCATTTGTCACTGTTTAATACTTATGAACGTTCCAGTATATTgtgtacaaaaaatatatatttttaaacattttcaagtGGTGAATATTAATACAGTTTCTGTTGAATTAGCATCTTGTGGCTCTATGTGTGTCTTGTAATGTTTACCGTCTGTTGTTTCTCATaaaactcagtgttaaaggttgACTACCAAGCTTGTGACAATGTTTACAGGACCAAAAAAAGTTTCTGATGTTCACTGTGAAGCAGTTTTCTAATATGAACAGAGAATATCTGTTCTTTTTCTACAATAAAGTTAAAAGCTGAAAAAAGTGGGAAAATTCCAGTACATCCTTTAATAGCATTGAACATTCACTGCTACACTCACAAAAGTGATGTCtgaaaaattgttgcaaacaatttataaatgttgaatttaaacaaacttgtCAAAATTTATCAGTTTAAATGCagcgcaaataaattgtttacaaccactcaacttaaaaaaattaagtaaatccaaggacTGATCCTTGAATAATTGTTTTCAGTGTAGTAAACGTACTTACTTTTCTTACTGATACTAAAATACAGCTCTGGGAAAGAATTAATTTTCTGAATTGACCATTACAGCATTTTGAATAAATTGTTAATTTGCGTTTTATTCTATAAACTATGAGAAGAGTCTTCAGTTTTTTAGAAGTTAAATTATAATGTAGATAGGCCAAAagtcaatatataaaaaaaggatTGTGTAGTTTCTACCCCAGAGCTACattcagttttagttttatatttatttatttatttgtaatgtgttttttttttttttttttttacctcctaAACTCTGAGACTCAGTACCGGGTCTGTGATGTCATTTACTTCTACATTCTTTCAATTTTAAAGCTCCatactgcccccccccccccccctaagtGGTTAACCTCTTAAAAATAGAAGCTATTTTGGGGTTTCCGCCAGGATTTTGCCAACCCAAGTTCAAAAGCTTcctaaatccacatgcagaggtgtaaatgcaaatgtttggtatcattttaaagaaaaccctttgagtttttataaaacactgttgaaagtgattaaaataattgtatatgttgtctgtgtcatAATAAATACCTCAAAAAAAGAGGCATTGCTGagttgctgtaattaattaaGTTGGTCAG
>TCONS_00062898
AAGTTGATGATGCAGTCGCGCGTCGATGACAATTTACCAAACACGTTTGGGCACGACGGAGGAATGTTGCAAAATTGGCTAGTCAGCGTCCTGCCGTGACTTGTGGTAACCGCTCACTCCGCCCTGCCGCCGTCAGTTTATAGAAGGAAGCGCCGAGACATCAGAGAGAAGATCGCCTGTGTGCCAACTAATCTGAGCTGAAGATGGCTGACGGAAAACTAGGTACCAACATTGGGGGTAACATTGGCGCGGGagctggcatcctggccaaacgCTTTCAGAAATCAATGAATCGAGCACAAGAGAAGGTCCTGCAGAAGCTGGGAAAAACCATGGAGACCAAAGATGAGCAGTTTGAGGAGTGCTCTGCCAATCTGAACAAACAGCAGACAGATGGCATCAGACTCTACAAGGACGTTAAAGCTTACTACAATGCGGTTAAAGTGATGCATGAATCATCCAAACGGCTGTCCCAGACTCTTAAAGATATCTATGAACCAGACTGGCATGGTGTAGAAGATCTTACTGTCATAATGGAGAGTGAGGATCTTTTGTGGAATGACTACGAGGAGAAGCTAAACGATCAAGTCGTTCGAACAATGGAGAACTACACCGCACAGTTCCAAGATGTCAAAGAAAGAGTAGCTAAACGAGGAAGGAAACTAGTTGATTATGATTCGACCCGTCATCATCTGGAGGCGTTACAAAGCGCCAAGAAGAGAGATGATGCCAAAGTAAATAAGGCTGAGGAAGAGTTTAACAAAGCCCAGGAGGTATTTGAAGACATTAACAAAGAGTTGAGAGAGGAACTGCCTGTTCTCTATCAAAGTCGTATCAGTTGCTATGTCACCATGTTCCAGAACATCTCAAACCTGCGGGATGTTTTCTACAAGGAGATGAGTATGTTGAATCACAACATTTATAATATGATGAAGAAGCTTGAAGATCAGCACTCCACCAAACCCTTCATAGTTAAAGGACTAAACagTTCTAAATCAAAGAAGAGAAAATCTGTTACGATCTCTGCACCGATCCCCTGTAACACCGCCTTCCCTACTGATCATCCGGCTATGAGCAAGCTCAGCATGCCCGACACCctcgcacacacagacacacgcatacacactccCTCAAAGAGCACAGAAATATCAGAATCCGAGTCAGACTCTTTTGACAGTGAACCCAACACCCCCAAACGGCAGTCTTTGTGTTCAGTTCGTTCTGATGGAGCCAGCGAAAACACATCTGGGAGTACCACTGATGAGACCGTACAAGCAAACGGTCAGGAACATCAAGATTCAGTGTCTGTTGAGCGCCAGGAAGAGGAGGAATCTAAATTATCACAAGCAGCATCATCAGAGGACGCCCATAATGCATCAACAGATGGAGACGATCAGACTAAACTTTTATCGGCCGATGAGGACAAACCTGCACCCATCCCCACTCCTCGAAGATCCAGCACATCAAAGAAGGATGAAGGAGAGacaaatgaaaatacaaaaggaTCCAGTGAAGATGTGAAGGAACAAAAGACGGAGTATGAAAATCCTCCAGGTTTCCTCTATAAGGCTGTTGCTCTGAAGAGTCAAGACTCAGATGAAGGTGTGCTGCTTCTGTTTGAAAAGGGAGATCTGATCCTTACGTTTGTAGATGATGAAGAAGAAAAGCCTGACGGCTTTGTGTGGGGAGTGAGAGAGCAGGACTGGATCCAGTACAAGGATCTGACTCTTCTCTCCGGCATCGTGGAGGAGTCTGAGATCGAGCGCATCACCTCATGAAGGGCGCCATGTGAACCCAAAGCCCCTTCAGTGCCTGTGGAGTGTCCTCATGACTGGATGTTGTAATATGAACTCTGTCTGCACTGTGCTCTAGACTTGAAAGACACTCTTGTCTTGTCATTTGTTGTCTTTACAAACTTCCTGTTGCGGACTCGACCCTGCAGACAGTCTTAGTCCTTTATTTTCAGATCTTCTCTGACTTTTATAGATCCTAATAACAATCACTAGATTTACACATCATTTATCATTTGTCACTGTTTAATACTTATGAACGTTCCAGTATATTgtgtacaaaaaatatatatttttaaacattttcaagtGGTGAATATTAATACAGTTTCTGTTGAATTAGCATCTTGTGGCTCTATGTGTGTCTTGTAATGTTTACCGTCTGTTGTTTCTCATaaaactcagtgttaaaggttgACTACCAAGCTTGTGACAATGTTTACAGGACCAAAAAAAGTTTCTGATGTTCACTGTGAAGCAGTTTTCTAATATGAACAGAGAATATCTGTTCTTTTTCTACAATAAAGTTAAAAGCTGAAA
>TCONS_00062899
ATGCAGTCGCGCGTCGATGACAATTTACCAAACACGTTTGGGCACGACGGAGGAATGTTGCAAAATTGGCTAGTCAGCGTCCTGCCGTGACTTGTGGTAACGTAAGTTTGAGTCTTAAAACGAATACGTATATTCTTCTAGACTGCCAGCTTGACTTAAGTGGATAGATACTGTGTGAGGCTAGATTTGCTCTCACACCCCTCTCTCAGCGCTCACTCCGCCCTGCCGCCGTCAGTTTATAGAAGGAAGCGCCGAGACATCAGAGAGAAGATCGCCTGTGTGCCAACTAATCTGAGCTGAAGATGGCTGACGGAAAACTAGGTACCAACATTGGGGGTAACATTGGCGCGGGagctggcatcctggccaaacgCTTTCAGAAATCAATGAATCGAGCACAAGAGAAGGTCCTGCAGAAGCTGGGAAAAACCATGGAGACCAAAGATGAGCAGTTTGAGGAGTGCTCTGCCAATCTGAACAAACAGCAGACAGATGGCATCAGACTCTACAAGGACGTTAAAGCTTACTACAATGCGGTTAAAGTGATGCATGAATCATCCAAACGGCTGTCCCAGACTCTTAAAGATATCTATGAACCAGACTGGCATGGTGTAGAAGATCTTACTGTCATAATGGAGAGTGAGGATCTTTTGTGGAATGACTACGAGGAGAAGCTAAACGATCAAGTCGTTCGAACAATGGAGAACTACACCGCACAGTTCCAAGATGTCAAAGAAAGAGTAGCTAAACGAGGAAGGAAACTAGTTGATTATGATTCGACCCGTCATCATCTGGAGGCGTTACAAAGCGCCAAGAAG
>TCONS_00062900
AAGATCGCCTGTGTGCCAACTAATCTGAGCTGAAGATGGCTGACGGAAAACTAGGTACCAACATTGGGGGTAACATTGGCGCGGGagctggcatcctggccaaacgCTTTCAGAAATCAATGAATCGAGCACAAGAGAAGGTCCTGCAGAAGCTGGGAAAAACCATGGAGACCAAAGATGAGCAGTTTGAGGAGTGCTCTGCCAATCTGAACAAACAGCAGACAGATGGCATCAGACTCTACAAGGACGTTAAAGCTTACTACAATGCGGTTAAAGTGATGCATGAATCATCCAAACGGCTGTCCCAGACTCTTAAAGATATCTATGAACCAGACTGGCATGGTGTAGAAGATCTTACTGTCATAATGGAGAGTGAGGATCTTTTGTGGAATGACTACGAGGAGAAGCTAAACGATCAAGTCGTTCGAACAATGGAGAACTACACCGCACAGTTCCAAGATGTCAAAGTTTGTAAAGCTGCCAAATTACAAACCTTCATTAGTTCCAGCTTTAATTTAGAGTGATAATATCAGATGCCAATGCCATGGTACAatctgtaatatttaataattatttattgaagtGCTATGGCACTTCTAAATCAACAGTtaaatatggagccagatcagtctcaaaaatcatacatttacaaaataaaatgcatacatgcacagcacaattcacatttaaaaagaCAATTGGTAAATGCACAAACCCAATCTGTAAAATCAAAACTCGATTCaataatacacaaatccaactcgaaaatttaaaacatgattcaaaaatagacaaatccaattaaaaaattaaaaaca

Function

symbol description
bin2b Predicted to enable phospholipid binding activity. Predicted to be involved in phagocytosis, engulfment; plasma membrane tubulation; and podosome assembly. Predicted to be located in cytoplasm. Predicted to be active in plasma membrane and podosome. Predicted to colocalize with phagocytic cup. Orthologous to human BIN2 (bridging integrator 2).

GO:

id name namespace
GO:0071800 podosome assembly biological_process
GO:0097320 plasma membrane tubulation biological_process
GO:0006911 phagocytosis, engulfment biological_process
GO:0005886 plasma membrane cellular_component
GO:0002102 podosome cellular_component
GO:0001891 phagocytic cup cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005543 phospholipid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5598 Predicted to enable phospholipid binding activity. Predicted to be involved in phagocytosis, engulfment; plasma membrane tubulation; and podosome assembly. Predicted to be located in cytoplasm. Predicted to be active in plasma membrane and podosome. Predicted to colocalize with phagocytic cup. Orthologous to human BIN2 (bridging integrator 2).

Ensembl:

ensembl_id ENSDARG00000010255

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062897 False 3376 mRNA 0.40 13 38879961 38894366
TCONS_00062898 False 2330 mRNA 0.44 13 38880166 38893499
TCONS_00062899 False 818 mRNA 0.47 6 38880175 38887112
TCONS_00062900 True 818 lncRNA 0.39 5 38880442 38885538

Neighbor

gene id symbol gene type direction distance location
XLOC_032191 stk35l coding upstream 18612 38845676 ~ 38861349 (+)
XLOC_032190 ube3a coding upstream 89897 38773376 ~ 38790064 (+)
XLOC_032189 atp10a coding upstream 149431 38626684 ~ 38730530 (+)
XLOC_032188 CR628341.3 coding upstream 289789 38518219 ~ 38590172 (+)
XLOC_032187 gabrb3 coding upstream 366383 38381957 ~ 38513578 (+)
XLOC_032193 slc48a1b coding downstream 1792 38896158 ~ 38902498 (+)
XLOC_032194 NA coding downstream 59115 38953481 ~ 38955126 (+)
XLOC_032195 prss60.1 coding downstream 191603 39085969 ~ 39091330 (+)
XLOC_032196 prss60.2 coding downstream 204031 39098397 ~ 39105480 (+)
XLOC_032197 prss60.3 coding downstream 214492 39108858 ~ 39112234 (+)
XLOC_032186 CR405707.1 non-coding upstream 502750 38377091 ~ 38377211 (+)
XLOC_032185 NA non-coding upstream 519518 38358681 ~ 38360443 (+)
XLOC_032184 AL935047.1 non-coding upstream 792350 38087495 ~ 38087611 (+)
XLOC_032178 NA non-coding upstream 1403860 37470116 ~ 37476101 (+)
XLOC_032204 NA non-coding downstream 475969 39370335 ~ 39378734 (+)
XLOC_032208 NA non-coding downstream 638112 39532478 ~ 39541448 (+)
XLOC_032209 AL954698.2 non-coding downstream 771981 39666347 ~ 39667572 (+)
XLOC_032210 AL954698.1 non-coding downstream 805834 39700200 ~ 39717558 (+)

Expression


Co-expression Network