XLOC_032193 (slc48a1b)


Basic Information

Item Value
gene id XLOC_032193
gene name slc48a1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 38896158 ~ 38902498 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062901
ACACCCGCAGGCGTCGCTGTTCTCTGTCAAAAAGACGCATGATTTCACTTTTGCTCCTGAGCTGAACCTCTGCGAAGAGCAACAAACACCCCACACGACGCATTATGGAGCAGTAAATGACGGTAGATGTGGATTGATCGACTGAGGCGGACTCTCTCTTCTTTATAAAGCCCCAGTGAATGACATTTCTCCACTAGTGGCGATAACAACTACAGCTGGATTTCACCGCTGTCTCCAGGTGGATCTGACGACAGGAATGGCGTTCAATAAGACGTATATTCGCGTGGGCTACTCGTGTATGGGGATGCTGGTGGGCTTTTCGGCGTTTCTGGTGTGGAACATCGCTTACAAACAGCCGTGGACCGCCGCGATGGGAGGATTATCAGgagttTTGGCATTATGGGCTCTGGTCACACACATCATGTACATCCAGGACTACTGGAGAACATGGTTAAAGGGCCTGAAGTTCTTCATGGCCATGGGTGTCATTTTCTCGGTGCTGTCCATCGTCGCGTTCATCTCTTTCCTCTGTGTCGCCATCTCACGCCAACAGTCGCTCACAGATCCCACCAGTCTGTACCTGTCATGTGTGTGGAGCTTCATGAGCTTGAAGTGGTCCTTCCTGTTGACCCTTTACTCGCATCGATATCGCAAAGAGTTCGCAGACATCTCCATCCTCAATGACTTttaaacacacagcagcacactaGTGTCCACAGGTAAACAATCACAAACATACCACATGTGCTCGGCTGTTAGCGTGCAGACTGGAGCAGAAACACTCAACGAGGAGAGTCTGAAAGTAGGATATCAGTAGCAGATCATTCTCTCTTTCTACACTCGTCTGTCCAGCGCTCTTAAGTTTTAAATCTGGACTTTTTAAACTCTATGATCAATGTCAGTCTTTCTGAGCCTTTTTACATTGAATGAGATGTTAAGAAGAGTTTCTGTCTTTCTCCAAGCTGCTGTTTTCTTCTTGTCTTGAATGTTTTTCCTTCTGCTGTTTCATTATGAGATACGAGTGACAGTTTTTAATTGAGCTGGAGAATGTCACACGTTCTCCTGCTACCGCACAGATGtctggtgttttttttaaaataagcactTTAATGTCCTTTAGTAAGTGGTTTAACCATCACAAACGCTGTTCCTTTGGGAATCTTGAGGCTTTATAGGTGAAGGATGTGCTGTTTGGAAAGGTTATGGTTCTTTGTTCATGGATTGAATGATTTTTGTAGCGTATGTTTCCACAAGACAAACAGGGTTTTTCATATTGAACATCAAATGTCTGTCAGCTGCGCTCAGACATTAATGCACGAGTTTGTTGTTCTATAACTTTgagctttcttttttttacataattacgCAAAAACATTGTATTATACTGTTTAGAATGGGTTTTTTTTGCTTTCGCCTCAACTTATGTGAACAAATCCATTATATTGTATTACAAAATCAATATCTTTATGTATGTGTGAGTGGCCCATTAATAAAATAACCTGTTATTATGTCCTTA
>TCONS_00062902
CAAACACCCCACACGACGCATTATGGAGCAGTAAATGACGGTAGATGTGGATTGATCGACTGAGGCGGACTCTCTCTTCTTTATAAAGCCCCAGTGAATGACATTTCTCCACTAGTGGCGATAACAACTACAGCTGGATTTCACCGCTGTCTCCAGGTCAAACGCGCGGATTCCCCACAACAACTATTTTTAGCATCTGGATAGTTCTTTGTTGTTTGAAGAGTATTTTCCTTGTTCATTCAGGTGGATCTGACGACAGGAATGGCGTTCAATAAGACGTATATTCGCGTGGGCTACTCGTGTATGGGGATGCTGGTGGGCTTTTCGGCGTTTCTGGTGTGGAACATCGCTTACAAACAGCCGTGGACCGCCGCGATGGGAGGATTATCAGgagttTTGGCATTATGGGCTCTGGTCACACACATCATGTACATCCAGGACTACTGGAGAACATGGTTAAAGGGCCTGAAGTTCTTCATGGCCATGGGTGTCATTTTCTCGGTGCTGTCCATCGTCGCGTTCATCTCTTTCCTCTGTGTCGCCATCTCACGCCAACAGTGTAAGTACAGATGCAATCACTC

Function

symbol description
slc48a1b Enables heme transmembrane transporter activity. Acts upstream of or within erythrocyte development. Predicted to be located in endosome membrane and lysosome. Predicted to be integral component of membrane. Predicted to be active in lysosomal membrane and plasma membrane. Is expressed in several structures, including blood; central nervous system; heart; liver; and pleuroperitoneal region. Orthologous to human SLC48A1 (solute carrier family 48 member 1).

GO:

id name namespace
GO:0048821 erythrocyte development biological_process
GO:0015886 heme transport biological_process
GO:0005764 lysosome cellular_component
GO:0005765 lysosomal membrane cellular_component
GO:0005768 endosome cellular_component
GO:0005886 plasma membrane cellular_component
GO:0010008 endosome membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015232 heme transmembrane transporter activity molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8226 Enables heme transmembrane transporter activity. Acts upstream of or within erythrocyte development. Predicted to be located in endosome membrane and lysosome. Predicted to be integral component of membrane. Predicted to be active in lysosomal membrane and plasma membrane. Is expressed in several structures, including blood; central nervous system; heart; liver; and pleuroperitoneal region. Orthologous to human SLC48A1 (solute carrier family 48 member 1).

Ensembl:

ensembl_id ENSDARG00000026109

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062901 False 1516 mRNA 0.43 4 38896158 38902498
TCONS_00062902 True 581 mRNA 0.49 2 38896240 38899167

Neighbor

gene id symbol gene type direction distance location
XLOC_032192 bin2b coding upstream 1792 38879961 ~ 38894366 (+)
XLOC_032191 stk35l coding upstream 34809 38845676 ~ 38861349 (+)
XLOC_032190 ube3a coding upstream 106094 38773376 ~ 38790064 (+)
XLOC_032189 atp10a coding upstream 165628 38626684 ~ 38730530 (+)
XLOC_032188 CR628341.3 coding upstream 305986 38518219 ~ 38590172 (+)
XLOC_032194 NA coding downstream 50983 38953481 ~ 38955126 (+)
XLOC_032195 prss60.1 coding downstream 183471 39085969 ~ 39091330 (+)
XLOC_032196 prss60.2 coding downstream 195899 39098397 ~ 39105480 (+)
XLOC_032197 prss60.3 coding downstream 206360 39108858 ~ 39112234 (+)
XLOC_032198 gpr84 coding downstream 211847 39114345 ~ 39119142 (+)
XLOC_032186 CR405707.1 non-coding upstream 518947 38377091 ~ 38377211 (+)
XLOC_032185 NA non-coding upstream 535715 38358681 ~ 38360443 (+)
XLOC_032184 AL935047.1 non-coding upstream 808547 38087495 ~ 38087611 (+)
XLOC_032178 NA non-coding upstream 1420057 37470116 ~ 37476101 (+)
XLOC_032204 NA non-coding downstream 467837 39370335 ~ 39378734 (+)
XLOC_032208 NA non-coding downstream 629980 39532478 ~ 39541448 (+)
XLOC_032209 AL954698.2 non-coding downstream 763849 39666347 ~ 39667572 (+)
XLOC_032210 AL954698.1 non-coding downstream 797702 39700200 ~ 39717558 (+)

Expression


Co-expression Network