XLOC_032194


Basic Information

Item Value
gene id XLOC_032194
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 38953481 ~ 38955126 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064906
atatatatatatatatatattgcgaaatgtagtttgtaatttataaACTCAAAATTGCTAGACAACGTCAGAACTGCTTCATGTTATGAACCCCTAGTTCTAGAAAGTCTAAATTTCTAAACTGCAGGGGGGAAAAATGAGTAAAGTTGTGATAAAATATCTTTGtttattataaaagtaaataactttttatttgtttattttgttgtggtAACTAAAAAGTAAGAGTTGTATTCTAAGTAAATCAAAAATTTTAAGGGGGAAAGTCTAAACTGCAAAATGTAAATTCACAATGTTAATAACTTTCAAGAGCAAGATTGAAAACGTCagaactgaaaaaatatataaatttccAACACTTAGAACAGAAGTCTGAATTATATTTTTCAGAAGCCCTGAACCACATGGTGAAAAAAAGCAATCTTggcaatgaggaaaaaaaaaaatttacctagTTTTAACGACATAATATCTCATTATAACAACATAATATCTTGTTAAAACGacatatttaatttgttattttgacaTAGTTCAGTCGTTTTTTCGACATAATTGTGTTAATTTCTATTTGAGCCACAAGATGGCAGAATAAGACCGGTCAATGTGCATGCTTTAAGTAAAATCTGAAATCAAAGAGCTTTACAATGGGAATTTTACCAGGCATATTCAATTATACAGGCACTGATGTGTTCACTTGTTGTTCCAGAttaaaattttgtccttaaatgtAACCCATAAAGAGCTGTGAAACACTGTAGGTGTTTATTTGCCTAGCCTAGTCTAGTTTTCACAACATATGTTCGATACTTGATTGATTTAGCAATGCatagttttgtattgttttaactGCCGATATTTTTATTGGAAAGACtgttaagaaaatattttgtttttacatttattcgcCTCCAGATTTGATTCCTTCTGTCCAGCACTCAATCACGACCGACTTCAACTTTGAAATTTAGGGTGGGGCAAGTGACATTCCAGTCACCGAAGTGTTACATTAAATTagttgttattttacaataacaatAAGACGTTTAATTATGGAAGCCCTGAACCACAATGTGAAAAAAGCAaagaattgagaattgtgaaataaaaactcACTACAATCTTTTCTCTTTTACACTCCATGGCAAGAACAAGCTCCCATAAGAATGTCCTTCTAAAACACGAAAAACCTAACTGAAACACCTATGGCAATCCCTAAGCGATCTGTAAATGacacacacccatacatactAACACACCACTCACAAATTTCGTCCTGGAAACTCTGTATGTGTTTTAAGGTGATTGTCCATACATTCACTCCACTCCACGCTGTGTGTCTGAGCCGCAGCACTTCTCCTGACGGGGGTGAATTTGCTAGGTGACCTGCCCGCCGAACACCTCCAGCACCAGAGGTGTGAGCTGCATGCTGTGCTCGGGCT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064906 True 1442 lncRNA 0.34 2 38953481 38955126

Neighbor

gene id symbol gene type direction distance location
XLOC_032193 slc48a1b coding upstream 50983 38896158 ~ 38902498 (+)
XLOC_032192 bin2b coding upstream 59115 38879961 ~ 38894366 (+)
XLOC_032191 stk35l coding upstream 92132 38845676 ~ 38861349 (+)
XLOC_032190 ube3a coding upstream 163417 38773376 ~ 38790064 (+)
XLOC_032189 atp10a coding upstream 222951 38626684 ~ 38730530 (+)
XLOC_032195 prss60.1 coding downstream 130843 39085969 ~ 39091330 (+)
XLOC_032196 prss60.2 coding downstream 143271 39098397 ~ 39105480 (+)
XLOC_032197 prss60.3 coding downstream 153732 39108858 ~ 39112234 (+)
XLOC_032198 gpr84 coding downstream 159219 39114345 ~ 39119142 (+)
XLOC_032199 tac3b coding downstream 229110 39184236 ~ 39187657 (+)
XLOC_032188 CR628341.3 non-coding upstream 363309 38518219 ~ 38590172 (+)
XLOC_032186 CR405707.1 non-coding upstream 576270 38377091 ~ 38377211 (+)
XLOC_032185 NA non-coding upstream 593038 38358681 ~ 38360443 (+)
XLOC_032184 AL935047.1 non-coding upstream 865870 38087495 ~ 38087611 (+)
XLOC_032178 NA non-coding upstream 1477380 37470116 ~ 37476101 (+)
XLOC_032204 NA non-coding downstream 415209 39370335 ~ 39378734 (+)
XLOC_032208 NA non-coding downstream 577352 39532478 ~ 39541448 (+)
XLOC_032209 AL954698.2 non-coding downstream 711221 39666347 ~ 39667572 (+)
XLOC_032210 AL954698.1 non-coding downstream 745074 39700200 ~ 39717558 (+)
XLOC_032213 NA non-coding downstream 919398 39874524 ~ 39882227 (+)

Expression


Co-expression Network