XLOC_032200 (b4galnt1b)


Basic Information

Item Value
gene id XLOC_032200
gene name b4galnt1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 39222598 ~ 39252851 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062910
GCGCGTGTGAAGCTGCATCATTCTCTCCTCCTCTCCGTCTCTCCCTCATATGCGCGCATTTCTCCGCGCTGCAGCCCTCCATCGTTATTCACAGAGGGGGTTGCCCGACTCCTCTCCCATCTCCTCCATTCCGTCTCAGAGGTGGATGCCATGCCATCAGATTTTCTTCATTTATCAGCTGTTTGCGTTCACATGACAAGCCCGCCGGGGGTGTTTTAAGGGTAGGAGATCCCTCTTGGTGGCGACATTACAGCAGATGGAGAAAGCCCTCCATCAGCTTCATCAGCTACTGTCAGTCACATCAGGATTGAGTCAGTCAGTACCATGGACCTTTAGGAGCAGGAATGGCAACTTACAGCACCTCACGCTCTGACTGGACTGAtTTGTAGCATGCGTTCCCTACGTAAGACAGTGCTGTTAGCTCTGGTAGCATCAGTGGTGCTGGTTTTGGCAGTGCTCCACTCGTGGCCCACACGGGTCTACAGTACCGTGGATGTCCGGTATAGACCAGGTCCTGGAGCTGAGCGGCTGTTGGAGGAGAGACTTCCCGAACTGGACCCCAGCGCCAGCACCATCCCGTACCGCGTCAGGGAGAGTGTGGCACGGCTTTTGGCTCGTAACGGCTGTGTTTGTGAAGGAGAGAGCAGAGGGGTCAACCTGCCCTTCGCTCAGCTGTTGTTCCCCAGAGTCTCAGCTCATCCCCTGCACACTGCCTTCCAGGCTTCGCAGCTCGATGAGATGAAGAAACGCCGCGCCAAAGAGTACCAGAGCTTCCAAATGAGGTCGCAGACCCCTGCTGATCTGCTGATTGTAGCTGAAGCTAACAACCCCCTGCAATATCCAACGCAGGGTGTGGAGGTTCGGCCACTTAAAACCATCCTTATACCAGGTTTGGCCTTAAAAGAGCTGCCCCGAGATGTCTATACTCTCAATTTTTCAGCATCTCTGGGCACGTTTAATGTGGCAGCAGAGGTGGAGGGGGTGAAGGTCAGGGGTGACGGCGAGATGCACATGACTCTGAGCAGCAGTGTTTTGTCCAGTCTCAATCGACAGCTCCAGTTCATCACATATACGAACACACTGTTCCACCCCAGCACAGCAGACACAGTGCAGTTAGACACAGAAGGACATCAGGCTCTTTTCACCATCAAGATCCGTCATGGAGTCACACCCAAACTCTACAACACAGGCTCTGATGCAGATAAAGagTATAACATCAGCGCTCTTGTAACCATTGCAACCAAAACCTTCCTGCGCTATGACAAGCTTCAGAATTTAATTGACAGCATACGACAGTACTATCCAACGGTTACAATAGTAATAGCGGATGACAGTGAACACCCAAAAACTGTGTCAGGCCCATATATTGAACACTATATCATGCCCTTTGGAAAGGGCTGGTTTGCTGGGCGTAATCTGGCCGTGTCACAGGTCACCACCAAATATGTGCTGTGGGTGGATGATGACTTTATCTTCAGTGCAAACACAAAGCTGGAGAAGCTGGTGGACGTTCTGGAGAAAACTACTCTTGACCTGgtTGGAGGAGCAGTGCGTGAAGCTACAGGCTACACCGCCACCTACAGGCAGACTATCTCCATTGAAGCCGGTGAGGAGGACGGGGACTGTCTGCACATGCGCAGAGGCTTCCATCACATCATTCAGGGCTTTCCTCACTGCGTGATCACTGACGGGGTCATCAACTTCTTTCTCGCCAGGACAGATAAAGTGCAGCAAGTTGGCTTTGACCCTCGGCTAGCCCGTGTTGCACATCTGGAGTTTTTCATCGATGGGCTCGGCTCTCTGCATGTTGGTTCGTGTGATGATGTCATTGTGAACCACGCCACTAAGATCAAGCTGCCCTGGGGCCAATCGGAAAGCGACAAAACGTACGCAAAGTTCCGTTACCCTCCAGCTTCATCCGATGCGACGCACACCAAAAATGGCCTCTTGTACTTCAAAAACCGCTTTCAGTGTCTAACACACAACTGAACACACCCTGACTATGCCTTCTTTCCTTTCACACGTCCTCCCTCAAACGAACACTCTCTCCCCGAGTCGCTAAAAGGGGCCCGTGAAGACACTGGAGGTGCATCTACTGTATACGGCCCCATTGGGGGAGCTCAAATAGGCCTCTTCTTACGGAAAGAGTCCTAATGTGATCGGACATGACAGACGGATGAGACGCACAGTGATGGCTGATTAGTTTTTTTGATACCTGAAGATGTCGTATTTTTGTCTCTCCTTTCTTTAGCTTTATTTTGTTCAAAAGAATTCTTTAGATACAGATCAAACCATTCCGTAAATGATATCTTTTTCTCCTCTCCTCAGCCAACCGTGTTTATTCATCACATTTAAAGGTCCGGTTGAGCACAAAAAcgtaaattctgtcattatttactcaaccaaACGGGGTGGTGAACTGACAAGTCAAAACTCATTTGATCTTTTGACATTTAAGAGGTCACTGAGGTATAAAAATATTCTCTAAGTTTCAGAACTCAGTGTGCCCATTAGTCTAAAACAGCTTGCGTTGAATCCAGGTTACCAAAATAATCAGTTGTGAATGAGTCACTCTATGATGTAATAGTGTGGTTAAACTCCGCCTCCACTATTGAAGACCACTGCTTGCTTCACTGTCTGTTTAGCCCCACCCACTGATTTAGGCTGTTGTCGGACAAACAAATGGCataaattgtgggaaaaacatGTGGAAAAACATCCCAACATCAGGAAATATTGGataaactgtatttatattgtaGTTGTAGACTGCTTTAGGTCCTTTTTAACTTCATTTCAACttcatcaaacttttttttattgtggattgttttacaaacaaaacacaattcaatgGTGGCTTTTCAGAAAGATTGAAACAAAAATGCTGTCACTAAATTGCATTCAAAATTAATGTCGCACCACACATTGCATTGGTTggcactagggctgcacgatagtggaaatctgacattgcaatatttcgtttttcttcgatatttattgcaatatgattttatttatttcaccagatgacttgaatagctcagTTTGAAAAGAACTCATCATCTTATTTGGATTGGGATGATTTCATAGGCCAGATTTGTTTGTGTaagttgaataattaaatgtaagcAAATAAAAGTAcacagtcttcattgtataaaagttaaattgttaTAATTTCTTGTACGCAAACTATTTAAATGCACTTGAAATCATGCATAGTccttaaaacaaagcaaacaggCACTATTTCACTCTAGTAGGTTGAAACTTCACAAACACTCAACAATCTGGTTCTTGGTCAGCTATATTTCCACTCAAATTTCCTGAGGAATGAATAAACTGAAGCTAAACtttgcagatcctgcaatgtgactattgtcgAATGATCacatgatcacattgtgatatggatgctgaaactatatattgtgcagccctagttggcACACATCTATCCTTTTCATCTTTGGCACctaatctttatttaatttttaaacatgcAAACTTTTAGTCATTCAGATTACAATCTGCCACGCATTTTCAAGCAGTGTGTACATATGCGGAGGTCGAAACAGGACAGAAATTAGCctattactacactgtaaaagaaatcagtaattttaTGGCTTATTTCTGACAGCTGTTGTgccgag
>TCONS_00062911
ATGCGTTCCCTACGTAAGACAGTGCTGTTAGCTCTGGTAGCATCAGTGGTGCTGGTTTTGGCAGTGCTCCACTCGTGGCCCACACGGGTCTACAGTACCGTGGATGTCCGGTATAGACCAGGTCCTGGAGCTGAGCGGCTGTTGGAGGAGAGACTTCCCGAACTGGACCCCAGCGCCAGCACCATCCCGTACCGCGTCAGGGAGAGTGTGGCACGGCTTTTGGCTCGTAACGGCTGTGTTTGTGAAGGAGAGAGCAGAGGGGTCAACCTGCCCTTCGCTCAGCTGTTGTTCCCCAGAGTCTCAGCTCATCCCCTGCACACTGCCTTCCAGGCTTCGCAGCTCGATGAGATGAAGAAACGCCGCGCCAAAGAGTACCAGAGCTTCCAAATGAGGTCGCAGACCCCTGCTGATCTGCTGATTGTAGCTGAAGCTAACAACCCCCTGCAATATCCAACGCAGGGTGTGGAGGTTCGGTCCCTGTACACTCATTGTTTTGCATCTCTGGGCACGTTTAATGTGGCAGCAGAGGTGGAGGGGGTGAAGGTCAGGGGTGACGGCGAGATGCACATGACTCTGAGCAGCAGTGTTTTGTCCAGTCTCAATCGACAGCTCCAGTTCATCACATATACGAACACACTGTTCCACCCCAGCACAGCAGACACAGTGCAGTTAGACACAGAAGGACATCAGGCTCTTTTCACCATCAAGATCCGTCATGGAGTCACACCCAAACTCTACAACACAGGCTCTGATTATAACATCAGCGCTCTTGTAACCATTGCAACCAAAACCTTCCTGCGCTATGACAAGCTTCAGAATTTAATTGACAGCATACGACAGTACTATCCAACGGTTACAATAGTAATAGCGGATGACAGTGAACACCCAAAAACTGTGTCAGGCCCATATATTGAACACTATATCATGCCCTTTGGAAAGGGCTGGTTTGCTGGGCGTAATCTGGCCGTGTCACAGGTCACCACCAAATATGTGCTGTGGGTGGATGATGACTTTATCTTCAGTGCAAACACAAAGCTGGAGAAGCTGGTGGACGTTCTGGAGAAAACTACTCTTGACCTGgtTGGAGGAGCAGTGCGTGAAGCTACAGGCTACACCGCCACCTACAGGCAGACTATCTCCATTGAAGCCGGTGAGGAGGACGGGGACTGTCTGCACATGCGCAGAGGCTTCCATCACATCATTCAGGGCTTTCCTCACTGCGTGATCACTGACGGGGTCATCAACTTCTTTCTCGCCAGGACAGATAAAGTGCAGCAAGTTGGCTTTGACCCTCGGCTAGCCCGTGTTGCACATCTGGAGTTTTTCATCGATGGGCTCGGCTCTCTGCATGTTGGTTCGTGTGATGATGTCATTGTGAACCACGCCACTAAGATCAAGCTGCCCTGGGGCCAATCGGAAAGCGACAAAACGTACGCAAAGTTCCGTTACCCTCCAGCTTCATCCGATGCGACGCACACCAAAAATGGCCTCTTGTACTTCAAAAACCGCTTTCAGTGTCTAACACACAACTGA

Function

symbol description
b4galnt1b Predicted to enable acetylgalactosaminyltransferase activity. Predicted to be involved in ganglioside biosynthetic process. Predicted to act upstream of or within lipid glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of Golgi membrane. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 26. Orthologous to human B4GALNT1 (beta-1,4-N-acetyl-galactosaminyltransferase 1).

GO:

id name namespace
GO:0001574 ganglioside biosynthetic process biological_process
GO:0030259 lipid glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0030173 integral component of Golgi membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0016758 transferase activity, transferring hexosyl groups molecular_function
GO:0008376 acetylgalactosaminyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100728-3 Predicted to enable acetylgalactosaminyltransferase activity. Predicted to be involved in ganglioside biosynthetic process. Predicted to act upstream of or within lipid glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of Golgi membrane. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 26. Orthologous to human B4GALNT1 (beta-1,4-N-acetyl-galactosaminyltransferase 1).

Ensembl:

ensembl_id ENSDARG00000077352

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062910 False 3662 mRNA 0.45 12 39222598 39252851
TCONS_00062911 True 1533 mRNA 0.52 10 39232245 39251178

Neighbor

gene id symbol gene type direction distance location
XLOC_032199 tac3b coding upstream 34941 39184236 ~ 39187657 (+)
XLOC_032198 gpr84 coding upstream 103456 39114345 ~ 39119142 (+)
XLOC_032197 prss60.3 coding upstream 110364 39108858 ~ 39112234 (+)
XLOC_032196 prss60.2 coding upstream 117118 39098397 ~ 39105480 (+)
XLOC_032195 prss60.1 coding upstream 131268 39085969 ~ 39091330 (+)
XLOC_032201 ankrd33ab coding downstream 26253 39279104 ~ 39286029 (+)
XLOC_032202 si:dkey-195m11.11 coding downstream 37926 39290777 ~ 39306721 (+)
XLOC_032203 krt18b coding downstream 107526 39360377 ~ 39365467 (+)
XLOC_032204 NA coding downstream 117484 39370335 ~ 39378734 (+)
XLOC_032205 mettl7a coding downstream 241013 39493864 ~ 39497974 (+)
XLOC_032194 NA non-coding upstream 267472 38953481 ~ 38955126 (+)
XLOC_032188 CR628341.3 non-coding upstream 632426 38518219 ~ 38590172 (+)
XLOC_032186 CR405707.1 non-coding upstream 845387 38377091 ~ 38377211 (+)
XLOC_032185 NA non-coding upstream 862155 38358681 ~ 38360443 (+)
XLOC_032184 AL935047.1 non-coding upstream 1134987 38087495 ~ 38087611 (+)
XLOC_032208 NA non-coding downstream 279627 39532478 ~ 39541448 (+)
XLOC_032209 AL954698.2 non-coding downstream 413496 39666347 ~ 39667572 (+)
XLOC_032210 AL954698.1 non-coding downstream 447349 39700200 ~ 39717558 (+)
XLOC_032213 NA non-coding downstream 621673 39874524 ~ 39882227 (+)

Expression


Co-expression Network