XLOC_032202 (si:dkey-195m11.11)


Basic Information

Item Value
gene id XLOC_032202
gene name si:dkey-195m11.11
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 39290777 ~ 39306721 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062914
ttaagtgttTCATCAGTTGGGTATTTCAGCTCTTCTTGTTGTAGATTTCACCAGTAAAACTTTCTTACTGTGCTACAGTTTCATTTATTGTGTCTTGTCAGGATGATTCTCAACAACATAAGAGCGTTAACTGTGGTGTGCTGGATAATGTGTGTGAGAAGCACTGTGTCTCAGGCTCCTACACTGAATTTTCCATACAGTGTGAATCCAAATAAGGTTGCTTTAAACACTCCAGTACAGTTTAGTTGTAACATTCCCAGATATTCTCCGTATCCCATGACTGTGTCTATTGGCAAACTGGAAAACTCCTCACAGACGCCAGAGAGCACAGTATCCTGGTTGACGTCGGAGGTCATACATTCAGGAAGTATGTACTTCACAATTCCTGCAGTCAGTCAATATGAAGGCAAATTAGTGTGCTGGTACAAATCCACCAAGACTTCACTGAAGAAGCCATATTCTGAATTCAGCAACCCTGTTGACTTCATCGTATCTGCACTCTCTCCTCCTAACATCACTGTGAACCCCGATTTCTTTCTTGAGGGTGGCAATTACACTGTGTCCTGTAATATAACCCCAAACACATTGACAAACTACACAATGAGCCAGTTTTACCGCTATCTCCCCTTCACCCCTGCAAACAACTGGACATTGCTTGGCTCTTCATTTCTCACAGACATCAGTAGTACTTATTCAAGTCAGAAGAATATGTTTGTCCCAGTGGAGTTCGCCTGCTCTACGGAGATGGTGTACAATGGAAAAGTCCTACACTCACCCCTGGCTACTAAACAAGCTATCCCagAAAGTCTTCCGGTTCAGCTGTGGGAACAAAGGCGTGGAGAGAGCTGTATGGGATATCTGAATATAAATCTGAAGTTCCAGTGGAGGCCTGTTTGTCAGAAGCCATTGGACACTGAAGCTGTTTCTCAGGCTGCTGCCACCACAGCTTCAGTGGTGTGCAGGGATCTAGGATGTGGGCATATGCTGAATTGGCAAAGGCTTTCAGATAGCACAAGGCTGTTCACGAACACAATTGGGGACATCAAATGCAGCGGGAAAGAAAATAAGATAAAAGATTGTTCATTAAATGTTACAGAATCATGCAAAGAGCAAGGGACTCTCTTTATCGTTTGCTCAGATGCAATGCCCCGTCCAAAACTGTCTGTGTTTTTGCATGGTCCTGTCTCCAAACTGTATGTCACAGATAAACAAGATGTGGAACTCGTCTGCTTTATCAACTCTACTCTTTTAAAAACACAAGACTATGGGTACTACATATTTAGAAAGAATGGTCAAGTCTTTAGGGAAATCTACACCCAACCTCAATACTTGAAGTCTGTCACACTTTCTGCCCCAGTAGAAGGAGAGTATGAATGTGCATTCCAGCTTGATTCGTCAAAAATCAAACAAGTGTCTCAACCCAGCAATAATGTCTTCATTTACATATACAATCCACCGGCTACAATGCCGATTGTTGCTGGTGTTCTCACAACTTTAATCGGGACAGCAATTCTGGTGTACATTTGTGTATGCAGAACTGCAAAAGAAGAGGTACCAGCACATCCCCAGGACCCAGAGACAGCACAGATCAGTACTGAAAATTCACAAAACAATGCAGACTACTTACCACAGCAAATGTAggacaaaacaaattaattatgataaaaatatgtttacTCTCTTGACCATGAAATATGATACTTGAATAATGGTAAAATAATGTTAAGAGATTTGTATTTTGCTAAAGTTTACCTGGAAAGATTCATTTGAAGATAATAATTATGTGGGTGTGGACACACTTGATATGTTCAGTTCAGATAATTCTAACTATGTAGTGATTGCTCTGCTAGTGTTTTTCAACCACTGAAAAGGATCATGGTTtgatttaaaagtaaagtaaaatataaatgagGTATGCAAGCTTGGGAAaggcaagataaaaaaaaaataaccgatttttaaaagtttagtgttttctgttttgcatttttagtgttgctattaaatggcagagtgaAGCAAACCAGGaactgaatttttttatttttttccctgcaTGGTTCAAACAAACCAGGAAGACCAAACTACAATTAtatgaacagattttttttttttttgtaaaatggtaacactttacacta

Function

symbol description
si:dkey-195m11.11 Predicted to enable scavenger receptor activity. Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005044 scavenger receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131127-648 Predicted to enable scavenger receptor activity. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000097909

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062914 True 2141 mRNA 0.40 8 39290777 39306721

Neighbor

gene id symbol gene type direction distance location
XLOC_032201 ankrd33ab coding upstream 4748 39279104 ~ 39286029 (+)
XLOC_032200 b4galnt1b coding upstream 37926 39222598 ~ 39252851 (+)
XLOC_032199 tac3b coding upstream 103120 39184236 ~ 39187657 (+)
XLOC_032198 gpr84 coding upstream 171635 39114345 ~ 39119142 (+)
XLOC_032197 prss60.3 coding upstream 178543 39108858 ~ 39112234 (+)
XLOC_032203 krt18b coding downstream 53656 39360377 ~ 39365467 (+)
XLOC_032204 NA coding downstream 63614 39370335 ~ 39378734 (+)
XLOC_032205 mettl7a coding downstream 187143 39493864 ~ 39497974 (+)
XLOC_032206 si:ch211-173n18.3 coding downstream 192902 39499623 ~ 39503381 (+)
XLOC_032207 mettl7a coding downstream 199322 39506043 ~ 39508375 (+)
XLOC_032194 NA non-coding upstream 335651 38953481 ~ 38955126 (+)
XLOC_032188 CR628341.3 non-coding upstream 700605 38518219 ~ 38590172 (+)
XLOC_032186 CR405707.1 non-coding upstream 913566 38377091 ~ 38377211 (+)
XLOC_032185 NA non-coding upstream 930334 38358681 ~ 38360443 (+)
XLOC_032184 AL935047.1 non-coding upstream 1203166 38087495 ~ 38087611 (+)
XLOC_032208 NA non-coding downstream 225757 39532478 ~ 39541448 (+)
XLOC_032209 AL954698.2 non-coding downstream 359626 39666347 ~ 39667572 (+)
XLOC_032210 AL954698.1 non-coding downstream 393479 39700200 ~ 39717558 (+)
XLOC_032213 NA non-coding downstream 567803 39874524 ~ 39882227 (+)

Expression


Co-expression Network