XLOC_032204


Basic Information

Item Value
gene id XLOC_032204
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 39370335 ~ 39378734 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062917
atgtttaaaaaatgcagtgcagattaaaataaaaacatttgtgtgGGTGACACTGTCGATTAAACAGCACCAAATCTATTTATTGACTAATTTCCTAAAGTcagtcattctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctgctaaAATACTTTGAACATAAAGGCAGGGCGGGGGAAGGGAGGATTTGGCTGGGGGAGGGGCTGTTGTCATAGGACAGAGGGAGGTTGTGCAGAGTTGcatagaagaaaaaaagaagaggcaagaaacaaaaaaaaagagtgtgAAGGCATGGCAGCGTAAAGCCTGGAATTTACTTACAACTGCTACATTGCAATGGAGATGCACAAAGCACTGGTTTCTGTGTTTATGAACAATGGTGGGAAGACTTTTGCACATCATTAGCTTTTACAATCAACTCACAAAAATAAGCTGATACAGAATTCTGGTTAAAACAGCATGgTGTGGTAATGATGCAGTGGTCATCCGAGTGGGCGGAGCAACACTATGATGTCTCCTCCACCACATCTCCACCAGTTCATCCTAAGCCCCTCCCATTTCCTCAGCCCAGTCGTCCTGCATTCTCTGGCTACAGTGATGACATCAGTGCGCTCAGTGCCTCCAGCTTACTAAAGCGCTACGCCGAGAGGTACTCCTTCAACTCTGCCCTACCAGAACATGGGAGTTTCCTGAGAAGTGAGCAGCCCCAGGAGCCATGGCCAGGGGGGTACAGCACAGAGGGGCCTGCTGGTTTAGACCCACTGAAGGCCAGCGGAAGTGATCTCTCCGAGCCACAATACAGCAGTGCTCCCACTCAAGATTACCCTTCATCttacagcagtcagcatcttctgCCCAAACCATCCTATCTTCCATCACCAGCGTTTGCCTTGCCATCTGCATACTTGCCCCCTGCACCAGGCTACGCTTATCCCCAACAGTGTTACCCCCACAACACCCCATCTCTTCTGACCTCGGGTCTGCACACCCCTACACCTCTCCACGGGGCAGCTGAACTCCCACGAAACCGGAAGATCGGCTTCGACCAGTCCAAAACTGCCAGAGTGTCACCTTACACAATCAGGGATAAGAGTGAACGGCAGAATGGTGACAGCGGTGGAAGTGTCAACGAAAGCTGTGGGACGGACATCCAGAGCTATAGGCCAGAGAGACTTTCCACTCTGCCCGATCTCGAGGCAGATGCTGAGGGTAAGAGCAGTCACCTGCGGCCTCTGGAGACACGCTCTTATGGAGGTCCAGGACAATATACGTATCCCTGAGTCTACTTGATGTAGCCAGTTGATGCTTTTTTTATACGTTTATAGCAATACTTGAATGTATTAAACATCAGGACGAATGTTACTGTGGTACTGTGgtaaaatttaattgtaaaatcAGAAACTCCATAACAGAGCCATTTTTCATTCCCCAAAGAACCTGTCAGTGAACAGTATTCAGTTCTGTAAAGAACCATTTTTATGCAAGGAACAATGGCAAAATCTAATGAACCAGTAGAAAGATACCATGGATGCTCAAGCTAAATTTTAAATCGTCATTATTTAAGGCACAGATATACTTCAAACAAAATCAACAAACTAAAATGACGtaatttcaaacaaaatccaGGCAAATCGAAGTTATTTGGAGTACATTTTGGCAGTTTGAAGCAGCTGACCAAAGCAAACTTTTGGGGGAGTTCGTTTTAGCTCCTTTTTAACTTGTGTTAAACACCTTTGAGCTCCCATTGGTCAATGACGATAAGGCAATCAGTGGCTGTAACTCCGCCTTCTTTGATCCAGACAGGAGAACAACATCCAATTGCTCTGACACCAGACAAGAAGCCCACCTTGTTGCACCACATCTTTTTCATGAATTTGCGCACACCGgcggcaaataaaaaaaaaataataataataataattccttacgtttatatagctcttttctggacactcaaagcgcttttaacgatgggggaatctcctcatccaccaccagtgtgcagcatccacctggatgacacgatggcagccatattgccgcacaccacacaccagctgattggtggagaggagacagagtgataaagccaattatgatataaggatggttaggaggccatgatagacagagaccagtgggcaaattcgaccaggatgctggggttaaacacTACTCCTCTTTGatggacatcctggaattttgaatgaccacagagagtcaggacttaaGTTTGACGTCTCAGAAAAACAGCGCTcattgagcagtatagagtccccatcagtatactggggcattaggacccacatagaccgaaggttgagcaccccctgttgGCCTTTCTAACACtatttccggcagcaacctagctttcccatgtggtctcccatccaggtacatACCCCTGCTTAGCTTGAGTTAGTGGCCATATAGGAGTTGCAGATAGCTAGCTGCCAGAAATCAGTGTAAAAATGTGATGCACTTCTTGTGTAGATGGCTGTTTGctagatgtttatgaaactgttctctCTCAGCCACCATTGTTGTATTTAGGGCTAaatgacacatttacaaccccacccaCTAGAGCTAGGGGTGTCAGAGGGTTTCAAACAGTACTTCGTCAATCAGTCATTAATGATACAGAATGATATAGAACATAGTTTGAAGTATATCAGGGTCTTCATTCACCTTTCACAtgtttcaaacatgtttgagtttctttcttcatgtgaacacaaaagaagattgtgGTAGAAGAATGTGGTAAACTCGCAGCCAAAAATGGTAGTCAGTGGAtaccagtttacaacattcttcaaaatttattcttttgcattcgtgagggtgattaaataatgattcattttccatttttttgGGGAGCGAACTATCGCTTTATTAGAGGTTCttcagaaaaccataaaacaacatttttaaaagtttatgaAACTTCAGATTGGGAAGATTTACTGATGTCTCTTTAATCAACATTATCATTATTCCTTACTGCCACTTTAACGGGACCTGTGGCACAGATACTCTTTTGTATCCTCTTTTTGTATTCTCTTCCTTTCCTCTTTTCCTCTTTCTGTCGCTCTATAATTATGCTGTGCAGTGAAGCACGTTATGGTGGCAAGCACTAAACCACCGCTTCAATCAATGAAATCCAAGCCAAAGGAAGACTGAAAGAGAGGAACGGAAAAGAAATAGaagaaataatgaacaaaaaaatgaagCTGCGTTAAAGCACACATTTGAAAGTTTCATGTCACACGTGTAATATATGGTTCTCATTCTATTTGTATGTCAGTGGTGATAGTCATGGATGTTCTCCAACACTGAAGTCCGTGAGCTAAAAACACTCATATTTTAGGAATATTATGTAAAATTCCTCTATAAACTTTGAATGTAAAGCCGATTTTCCTCAGGAATTGTGAATGAAGCCATACTTTATGTTTATCTTATacaaattttaagtttttaatgtctagttagtgtagtttttttgttgttgtcatgtctgtcattaaaatgaaatgtatttgtaACTTTACTTACAGTATTTCAATGATTAAACAACGACTCGCcgttttttttacaaactgcatAATCCTAGCTTTCCCAGGGCTGCTGCAAAAAAAGGCTAAAGGGATTTTTCGCAGTCTTTTCCACTATTCACCTATTGTGAGGTTTACTATGGGAACCCGCAGAGCAGTCCCAGCCCCCTGAGTTGATCACTGGATGTGTTTTCCTCTGACCCTCTGACCCTTCTCTGTTTTAAATGAGGCATGCAAAAGAATAGAGAGCTTTTGTTATGGTGAGGCACGCTGGACATACACTGAAATGTACAAACTGAACTGAAAATGACAGTttagttaatatttaattttgataaatgTGTCAAATGTAACACTCACAAACGCATTACATGGGACAAAATCATGTTACTTCATAAATATACAATACGTTCTACCTCACGGTTACAATTCTGAATGTTCAAAGTATGCAATTGTGTATTACATGTTTAAATGTCTACctcaagaaaaaaacacaaaataaaatctatCATACCAATACAAC
>TCONS_00062918
atagaagaaaaaaagaagaggcaagaaacaaaaaaaaagagtgtgAAGGCATGGCAGCGTAAAGCCTGGAATTTACTTACAACTGCTACATTGCAATGGAGATGCACAAAGCACTGgTGTGGTAATGATGCAGTGGTCATCCGAGTGGGCGGAGCAACACTATGATGTCTCCTCCACCACATCTCCACCAGTTCATCCTAAGCCCCTCCCATTTCCTCAGCCCAGTCGTCCTGCATTCTCTGGCTACAGTGATGACATCAGTGCGCTCAGTGCCTCCAGCTTACTAAAGCGCTACGCCGAGAGGTACTCCTTCAACTCTGCCCTACCAGAACATGGGAGTTTCCTGAGAAGTGAGCAGCCCCAGGAGCCATGGCCAGGGGGGTACAGCACAGAGGGGCCTGCTGGTTTAGACCCACTGAAGGCCAGCGGAAGTGATCTCTCCGAGCCACAATACAGCAGTGCTCCCACTCAAGATTACCCTTCATCttacagcagtcagcatcttctgCCCAAACCATCCTATCT
>TCONS_00062919
agaaaaaaagaagaggcaagaaacaaaaaaaaagagtgtgAAGGCATGGCAGCGTAAAGCCTGGAATTTACTTACAACTGCTACATTGCAATGGAGATGCACAAAGCACTGGTTTCTGTGTTTATGAACAATGGTGGGAAGACTTTTGCACATCATTAGCTTTTACAATCAACTCACAAAAATAAGCTGATACAGAATTCTGGTTAAAACAGCATGagGATGTGCTTTGTAAATAGATCCCAGGCTGAATTCTTAGCATTCCGTGTGCAGCCGTATTTATGGATGGGATCCTGTCTCTTCAGTGGAAAGTGTGTGAAATGGAGGGAAGCAGCAAAAGATATAAAGATAACACAGAAACAGCCATAGGCATTAACTATTCGGAATGAACAAGAGCATTTATGCGTAGCAAGGATTTGTTGGATTAGCCAAAAATCTTGACTCCAGAACTGTGGTGAATATAGTAATGTTGatgtatatttgtttaaaatgctCTTAGTGTG

Function

GO:

id name namespace
GO:0042693 muscle cell fate commitment biological_process
GO:0048731 system development biological_process
GO:0042694 muscle cell fate specification biological_process
GO:0048732 gland development biological_process
GO:0021536 diencephalon development biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0022612 gland morphogenesis biological_process
GO:0007224 smoothened signaling pathway biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0035270 endocrine system development biological_process
GO:0048513 animal organ development biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0006413 translational initiation biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048850 hypophysis morphogenesis biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048852 diencephalon morphogenesis biological_process
GO:0048853 forebrain morphogenesis biological_process
GO:0048855 adenohypophysis morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0033505 floor plate morphogenesis biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0021953 central nervous system neuron differentiation biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0007399 nervous system development biological_process
GO:0021983 pituitary gland development biological_process
GO:0021984 adenohypophysis development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0007418 ventral midline development biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0030900 forebrain development biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0021508 floor plate formation biological_process
GO:0021510 spinal cord development biological_process
GO:0060322 head development biological_process
GO:0021515 cell differentiation in spinal cord biological_process
GO:0021517 ventral spinal cord development biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-030131-3092 No description available

Ensembl:

ensembl_id ENSDARG00000097445

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062917 False 4122 lncRNA 0.42 3 39370335 39378734
TCONS_00062918 False 525 mRNA 0.51 2 39370615 39375522
TCONS_00062919 True 500 processed_transcript 0.38 3 39370620 39371875

Neighbor

gene id symbol gene type direction distance location
XLOC_032203 krt18b coding upstream 4868 39360377 ~ 39365467 (+)
XLOC_032202 si:dkey-195m11.11 coding upstream 63614 39290777 ~ 39306721 (+)
XLOC_032201 ankrd33ab coding upstream 84306 39279104 ~ 39286029 (+)
XLOC_032200 b4galnt1b coding upstream 117484 39222598 ~ 39252851 (+)
XLOC_032199 tac3b coding upstream 182678 39184236 ~ 39187657 (+)
XLOC_032205 mettl7a coding downstream 115130 39493864 ~ 39497974 (+)
XLOC_032206 si:ch211-173n18.3 coding downstream 120889 39499623 ~ 39503381 (+)
XLOC_032207 mettl7a coding downstream 127309 39506043 ~ 39508375 (+)
XLOC_032208 NA coding downstream 153744 39532478 ~ 39541448 (+)
XLOC_032209 AL954698.2 coding downstream 287613 39666347 ~ 39667572 (+)
XLOC_032194 NA non-coding upstream 415209 38953481 ~ 38955126 (+)
XLOC_032188 CR628341.3 non-coding upstream 780163 38518219 ~ 38590172 (+)
XLOC_032186 CR405707.1 non-coding upstream 993124 38377091 ~ 38377211 (+)
XLOC_032185 NA non-coding upstream 1009892 38358681 ~ 38360443 (+)
XLOC_032184 AL935047.1 non-coding upstream 1282724 38087495 ~ 38087611 (+)
XLOC_032210 AL954698.1 non-coding downstream 321466 39700200 ~ 39717558 (+)
XLOC_032213 NA non-coding downstream 495790 39874524 ~ 39882227 (+)
XLOC_032216 NA non-coding downstream 625861 40004595 ~ 40017137 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G138360 NA non-coding CI01000027 null 1237749 ~ 1238319 (+)
mexican tetra (Astyanax mexicanus) G116359 NA non-coding NC_035909.1 CM008312.1 36823464 ~ 36831576 (+)