XLOC_003221 (nwd1)


Basic Information

Item Value
gene id XLOC_003221
gene name nwd1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 7214353 ~ 7246987 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006349
CTCAGTGGATAAAATGACGGCGCTGAGGAGAACAAACAACCGAGCTGGAGCGCCCTGCAACAGAGAGCTGTGTTCTTTTTTGTATAATAGGAGACAGCTGAAAAGTCTTTAAACAATTTGTCAAATGGCttgatttacatttactttttaattataatttcatTTCTCAAACTAGCAGTGATGCTCACAGTGGCACCGTAGAACTACCCGGATGTCGGTGGTTTAATAGGACTGGAATATTCTGGATTAACTGAGGTGTTGGTCAGGATGGATGTGGTGGAGATGAGAGAGGCACTTGGGTTGGAGGTTCTGCGGGGACAAAGCGCTGATTCTCTGCAGCCTACTTCCAGAATGGTGCGGGTGTTCATCAGCTCCACTCACTCAGACATGAAAAATGAGAGAAATGCATTCTGGGAGAAGACCTATTCGGAGCTACAGACCCACTGCCAAAGTTTGGGTCTTGTTTTTGAGGTAGTGGATTTCAAATGTGGAATGCGTGACATCACTGCATCTGATCATTTAATAACTGAACTGTGCATTAAAGAAATCGAAACCTGCCAGAGGATATCAGATGGGCCAACTTTTATAgctttGATCGGTAATCAGTATGGCCATCGCCTTGTCCCGCGCCTCATACCAGAGGCAGAGTTTGAGTTGCTGCTATCAAAACTTTCCAAAGATCCAGAGAGTTTAAAGCTCCTTAACCAATGGTTTTACAAGGACAGTAACTCAATCCCACCCACATATATCCTCCTGCCAATCACGGTGCACTACCCACATTACAATGAGAGAGATTCTGAGAACGCACAGTTGCGGGATAATGATGTCATATCCTGGAATCTAACAGAGTCACGGCTGCTGCAGGTTCTCCGCAGTGCAGCTCTACAGGCTGAGAGAGACGGGGATTTCACTGCTGACAGCAAGCACAAGTTTTTCAAATCTgttttAGAATATGAGATGGAGCATGGCTTTCTCAGGACTCAAAGGGATGCATCGGCTGTGCTGTTTTTCCGCGAACTGCCTCGACTTAGTAAAAGAGACTGCAAGAAAAACTTTGCAAAGTTTCTGCTGGACGTCACAGCCGACGGCTTGCTGGACACACAAGCCCGGGAGCTCTTGACTGACCTGAAGCAACGCATCTGCAACACCGGTCGCCTCCAACCACTCTGTATGGAGCTCAGCAAAGGAGCCATGGACCCAAGCCGCAAAGAACACAAGGAATACCTGGGTAAGCTGTGTGAACAGGTAACATCTCAATTGAAGGAACTGATCAGCAGAAATGCTCTGCAAACCTCAGGAACTTCAGTAGATCCAGTATGGTCCTGGCTAAAACAGGAGATCTTTCATCATGCCAAGTTGAGTGAGGAGAAGTGTGCTGTGTTTAAAGGGAGAGACGACATTCTGGGAAAGATCTCCATCACCCTGTGGGAATCCAATGATGTTTCTCATGGACCTCTTCTAGTCCATGGACCTCCAGGAGTTGGTAAAACAGCTCTGCTTTGCAAACTGGCCAAGGAAATGCGAGCAGTTGTTGACAATCGGGGAGTTGTTCTGCTGAGGTTGCTGGGAACATCTCTGCTCAGTTCAGATGTCGATTCTGTTCTTCGAGGTGTTTGTCTTCAAGTGTGTGGAGCTCTAGGGTTGCAGTCCCCATACTCGCATATAGCGTACACGCATGAAGGGCTAGTTCGATTTTTCCATTCCATGCTGGAAGACGTGTCAAAACAAGGAGACACTCTTCTACTCATTCTAGACTCATTGGAGCAGCTTTTAGAGACAAACAAACTTCATAAACTAGACTGGATACCTAAAATAATTCCACCCAATGTGCAAATCGTATTCTCAACTTCTAATGAGTGCTTGGACAAATGTAAATCTTTGGTTTCAGCGGAAGAAAACATCTTTAAATTGGAACTTCTCACGAAAGATCAAGGGAGAGACGTCATTGATGCATATATGAGTGCAGCTGAACGCAAGCTGACGGCAGAACAGCAAGACGCAATCTTACGCTACTTTGAGCAAAGTGGAAACCCTTTGCATCTGAAACTCATGCTAGACACTGCCAAACTGTGGTCCTCCTACACCCCCATGTCTAGTGTTCACCTGGACAAGTCGGCGGAGGAAGTGATGACACAGTTTGTCGAGTCACTTGAGGTGAATCATGGGAAGAAGCTAGTCAGTCATGCTCTGAGCTTCATCCTGTTATCAAGATATGGACTTTCAGAGGCAGAGTTACAGGATGTCCTATCATTAGATAATGATGTTCTAGCTGAGATCTATAAATGCTGGCTTCCTCCGAGCCATACGCTCATGCGCTTCCCACGTTTTCATTGGTCAAGACTCAGGCATGACCTGAGTGCTCATCTGACGGAGAGATGGGAAGCCGGCGTTCTTCTGCTGGGTTTCACTCACAGGCAGTTTGCAGAACTGGTAAGGAGGAGATATTTGTCACGTGATGTGAAAGCTGACATGCACACGATCCTCGCCGAGTATTTCTCCGGACAGTGGAGTAAGGGGCAGCTCAGACCCATCCTTCTCCCCTCACTGAGCGCATTTCTCAATGCTGACAGAAAGGTATCACCCCAGCCCTTGTGGTTTTCTGAAGAACTTGCCAATTTGCGTAAGATTCATGAACTTCCTTATCACCTTGCTCACGCAGGAAAATGGGACGAGCTACGACAATCAGTGCTTGGGAGTCTGGACTGGTTGTGCTGTAAGACTCTGCAGTGTGGCGTGAGCTGTGTTATTCAGGACCTGACCCTTTGCACTGACCTCACTGACTGCCCTGAGATACAGTTGCTGAAGGAGACGTTTTTGCTTCTTAAACCCTCGCTGGATTTTAGCGACGGCCGCGTGGATCCCTCGCTGTTAGTGACAGAGATCTTTGCCAGGCTACAGGGTCTTGCTGATCATTACCCCTCCATGATTGGTCAACTGTGTTCTCAATGTATGGACTGGTTTGAATCCTATTCTGACCCATTACTTGTGCCCAAATGCAGCTTCTTTGAAGCCCCTGGTGGCCCACTAAAGAGCACCCTCAGAGGATTCACTAAAGGGGTGAAGGCTGTTGTTCTGTGCTCAAAGAGGAAGCTGCTGTTAGCAGGTTCAGAGGATGGACTGATCATAGTCTGGAGTCTAAACAATCTGCAGCCTCTTCACACTCTTTCTGGACATAAAGCCGGGGTGCTGTCCCTGAAGCTGACGGACAAAACCAATAACTGTTTGTCTACTGGGCTCGATGGGACTCTGAGAAAATGGTGTCTGATAAGTGGACTGCAGCTTTTCTGCATCACTGATGCCGTTTCTGTCCAAACACACAGCCCTACACACATCCATATGAATGAAGAAAGGAAGATCATCATAACCAACCCAAGCAGCCAAGTTAAAGCTTGGGATTTGGACACTGCAGAGCCTCTGTTTGAGCTGACCGCAGTGATTGGTTCTGTTCTTGGCATTGTGGAAGATGAAATAGCGTGCATATGCAGTGAGGCGATACTCTGCTTTTATGACATATCCACCGGCACTCAGACTTCCCAGACCCTCCTGCCCTACTCTGCCGGACACCATAACATCACCTGCTGTCTCACACTCACCAAACACTCCAAGATACTCATTGCTTTTGGGGAAAGCCGTCTACATTCGgtgtggaGCCATGAAATGGAGTCTGTGATTGATCTTCCATCTCCAGCTCTCTTTCTCAGAACATCTGAGGATGAAAAACTGCTGCTTGCAGgATGTGACAGAACATTGTGCGTGTTCCTCGTGACATTGACTTCAATGCACAAGGTTCTGGATCTTCAACATGATGCATCTATCCTGTGCGCCGTGTCAAACAGCGAAGGTAGCGAAATCATCACGAGTGCCCAGGATCGTATAATACGGGTATGGAGCGTAACCACAGGAGCCCTGCTGGACTGGATCGGTGTGATGGATTCCTCTGTGTCCTCATTGGCTGTACATCAGCGCTTTATTATTTCCGCCTCTGTTATTGTCAACCAGCTTAAAGTATGGCAGCTTGACCACAACACCACGCACAGGAACAAGAGTTTCATCCCCGCATACTGCCCCTTGGCAGTCCTGTCGAAAGATGGTGATACTGTATTCTATGTCAAGGAGGGAAATAAAACCGAGGTTTTCACCTGGAGCTGTTCGGAAGGTCTGCAGTTAGACAGCATGGACGTTTCCTCAGAGGTGTGCTGTATGGAATTAGCCCAGCAGAAACGGCTCCTCTTCTGCGGTCTGCACACTGGAACCATCTTTATTTACCCGCTTGACTTTATCCCAGAAACCTTGTGCCTACCGCCTCCGGAAAGCCTACCAATGGTACGCAGCATGGCCATCAGCCCACGAGAGGACAAAATGGCCGTCGCATATGAGGATGCCGTCTGTCTGTTTGAGATTACAGCGAGGGACAGCTTCCCTTGCGTCGATGGACCATTTGAAAGGTACTCGCTTGACCTGTTACATTCCTCAATCTCCGCCATGGCTTTGTTGTCCGACTGCAGGCTGCTGTATGGGACGTTTGGCGGCGAAGTGGTGATCTACGACTTTAAAAGCGCCACAGCAGCAGAGCTGGATCACCACGGTGCAGCCATAACCTGCATCACCATGAGCAACTGGGATGCGCAGGCACTGATTGGCTCTCAGGACTGTGTTCAGAAGCTGTGGAATTTGAGTCCCGTCTTACTGAATCACACCATGGAGTACAAGggcttttattttgaaggagTTCTATGTGCTGTCTTCTCAATAAATGATAAATACGTGTTCACTGGATCCTTGGACAAAACCGTCAAAGTCTGGGATGTTTCGAGTGGTTGTTTGCTGTATATCCAGTACGTCTACTCTCCGGTCATAAGGATGATGCCACACAAGGATGGATTTGTAGCTGTATCCCAGCATGGCTCATTCATCAAGGAAGGTTTTCGCTGTCCAGACAGCCTCAAGCCTGGATATAACCCCCTCCGGAACTTCCAAGTACATTACAAAGTCACTTCACGAGACAAAAGTCTGAACGTTCCACACAGCGTGATCAATGAGCTGCCAGATTACAACCCTGCTCAGTTCAACTTCATTGGCATCGGTCTGATCAAATCCAAACCATCCAATACGTGCGTTCTCCTCTAAGTACATTCTACATCGCAAACCTcttataactaggcccacacttATTCTGCGTGCAGATTtactaaagctgcgtcccaaattgcatacttatgcactattctacgcc
>TCONS_00006350
AGCGCTGATTCTCTGCAGCCTACTTCCAGAATGGTGCGGGTGTTCATCAGCTCCACTCACTCAGACATGAAAAATGAGAGAAATGCATTCTGGGAGAAGACCTATTCGGAGCTACAGACCCACTGCCAAAGTTTGGGTCTTGTTTTTGAGGTAGTGGATTTCAAATGTGGAATGCGTGACATCACTGCATCTGATCATTTAATAACTGAACTGTGCATTAAAGAAATCGAAACCTGCCAGAGGATATCAGATGGGCCAACTTTTATAgctttGATCGGTAATCAGTATGGCCATCGCCTTGTCCCGCGCCTCATACCAGAGGCAGAGTTTGAGTTGCTGCTATCAAAACTTTCCAAAGATCCAGAGAGTTTAAAGCTCCTTAACCAATGGTTTTACAAGGACAGTAACTCAATCCCACCCACATATATCCTCCTGCCAATCACGGTGCACTACCCACATTACAATGAGAGAGATTCTGAGAACGCACAGTTGCGGGATAATGATGTCATATCCTGGAATCTAACAGAGTCACGGCTGCTGCAGGTTCTCCGCAGTGCAGCTCTACAGGCTGAGAGAGACGGGGATTTCACTGCTGACAGCAAGCACAAGTTTTTCAAATCTggtaagacattttttaaatgtttcatggATATGCAGAATAGGGCCTAAATCTTATTTCCAACCTGGTGAATTTTTGGAAGAATTCCATTCCaattagatcaggggtgcccaaactttttcttttgaaaaaccaaacttgattgaggctagtgggctgaaggtaaatatagttgccattggtaatttccta

Function

symbol description
nwd1 Orthologous to human NWD1 (NACHT and WD repeat domain containing 1).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-071116-8 Orthologous to human NWD1 (NACHT and WD repeat domain containing 1).

Ensembl:

ensembl_id ENSDARG00000076110

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006349 False 5233 mRNA 0.48 19 7214353 7246987
TCONS_00006350 True 811 lncRNA 0.44 4 7214674 7219360

Neighbor

gene id symbol gene type direction distance location
XLOC_003220 thop1 coding upstream 2256 7183025 ~ 7212097 (+)
XLOC_003219 tmem38a coding upstream 34837 7158723 ~ 7179516 (+)
XLOC_003217 NA coding upstream 62346 7149071 ~ 7152007 (+)
XLOC_003218 CU929070.2 coding upstream 63447 7150820 ~ 7150906 (+)
XLOC_003216 CR925817.1 coding upstream 110817 7095176 ~ 7103536 (+)
XLOC_003222 reep6 coding downstream 14994 7261981 ~ 7274378 (+)
XLOC_003223 si:ch73-238c9.1 coding downstream 29837 7276824 ~ 7280259 (+)
XLOC_003224 NA coding downstream 34252 7281239 ~ 7286310 (+)
XLOC_003225 diras1a coding downstream 77717 7324704 ~ 7341807 (+)
XLOC_003226 adgrl2a coding downstream 185546 7432533 ~ 7737642 (+)
XLOC_003250 BX324177.11 misc downstream 4098816 11345803 ~ 11346099 (+)
XLOC_003255 BX324177.14 misc downstream 4125899 11372886 ~ 11373182 (+)
XLOC_003257 BX324177.13 misc downstream 4139375 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 4171046 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 4182406 11429393 ~ 11429689 (+)
XLOC_003215 FQ976909.1 non-coding upstream 257974 6946591 ~ 6956379 (+)
XLOC_003212 BX936438.2 non-coding upstream 351985 6862252 ~ 6862368 (+)
XLOC_003227 CR450813.2 non-coding downstream 535527 7782514 ~ 7783314 (+)
XLOC_003228 NA non-coding downstream 578366 7825353 ~ 7826072 (+)
XLOC_003229 NA non-coding downstream 633155 7880142 ~ 7971030 (+)
XLOC_003234 CR847563.1 non-coding downstream 1331067 8578054 ~ 8580557 (+)

Expression


Co-expression Network