G1326092 (LOC106592876)


Basic Information

Item Value
gene id G1326092
gene name LOC106592876
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 74769025 ~ 74770380 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1514405
TTTATTCCATCGTCTTCATTTCACACAGGTCAAATCTGTGACATGTCAttttgattggctgacagccgtgatatatcagacattataaactgggtggttggagccctgaatgctgattggctgacagccgtgatatatcagacattataaaccgggtggttggagccctgaatgctgattggctgacaaccgTGATATATCAGACCGGGTATgacaaaaacatgtatttttacagcTCCAATTACATTAGTAAcccgtttataatagcaataaggcacctttaGGGGGTTTGTGGTAATATGGCCAAGACAGGATTGAATGGCCAATATGACCACCTAGAATCAATACTAACTATCTATTTTACAACTGATACTACATCTAAATGATGTGTGGGAATAGGGGAATTATCAATGACTTAACACGCCATTTAAACCAGTCAAATCGCAGATTTCCCAGGGAGCCGTtttctaattaagcaataaggcccgggtGCTGTGATTACACGGCGTCTCCTTACTACCGAACAGGACCGCGATTAGAGGGAAACATCACGTTGTGTTTTTGACACAGGGGCCACCACctgacacagggacactgaggagtgACACCAAACAAACAGCCCTGGGTAGAGGGGCTCGGTAAATGTGGTGTAGAACGTGTGCAGGTGAGTCAGTGTATCAGAACAGACCTTGTAGAAAGACATCGTGCCggctggccagtccagatacaGTCCTACTCTGTTGgacgggggggaggagggggaaggtATGGTAGTGAGCTTACTATTGATCCAGGCCATGTAACGGTCATCACAACAGACCAGACACCAGGCTTTGTCACTAGGTCCAAGCCCACTATCATCACCCCTTCCTGACCGATTGATTCCTTTATATGTCACACCGATATGAGCTCCTCTcccactccactctacctcccagtaacagcgcccTGACAGACCCTCTGTACACAGCACCTGGTCGAAATCCTGAAATCTCTCCGGGTGATCCGGATACggctgctcctctgtcctccatgtcaccgttctgttctcctcagacagagagaggtttctGCTTGCTGTGTTCGGGTCCAGTGAGAGCACACAGCC

Function

NR:

description
NLR family CARD domain-containing protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1514405 True 1108 lncRNA 0.48 2 74769025 74770380

Neighbor

gene id symbol gene type direction distance location
LOC118938855 LOC106576675 coding downstream 162909 74602942 ~ 74607316 (-)
LOC118938856 LOC106576675 coding downstream 216827 74521099 ~ 74552198 (-)
LOC110514977 NA coding downstream 347259 74419928 ~ 74421766 (-)
LOC110491887 tmbim4 coding downstream 394796 74358126 ~ 74374229 (-)
LOC110514334 mdm2 coding upstream 4067 74774447 ~ 74797613 (-)
LOC110516942 LOC106576641 coding upstream 30183 74800563 ~ 74805861 (-)
LOC110514333 nu107 coding upstream 35629 74806009 ~ 74876319 (-)
LOC110490689 rap1b coding upstream 112649 74883029 ~ 74988331 (-)
LOC118938932 NA coding upstream 420241 75190621 ~ 75191934 (-)
G1326093 NA non-coding downstream 1203 74767442 ~ 74767822 (-)
G1326091 LOC106592876 non-coding downstream 3216 74765396 ~ 74765809 (-)
G1326090 NA non-coding downstream 12946 74755292 ~ 74756079 (-)
G1326087 NA non-coding downstream 18499 74749966 ~ 74750526 (-)
G1326082 NA non-coding downstream 25993 74741357 ~ 74743032 (-)
G1326097 NA non-coding upstream 17269 74787649 ~ 74788273 (-)
G1326112 NA non-coding upstream 117592 74887972 ~ 74888428 (-)
G1326113 NA non-coding upstream 121376 74891756 ~ 74892483 (-)
G1326117 NA non-coding upstream 131581 74901961 ~ 74902496 (-)
G1326123 NA non-coding upstream 151979 74922359 ~ 74924008 (-)
G1326070 NA other downstream 45625 74722589 ~ 74723400 (-)
G1325915 b2m other downstream 373457 74375301 ~ 74395568 (-)
LOC110511321 lemd3 other downstream 534211 74218902 ~ 74256009 (-)
LOC110513406 LOC106576618 other downstream 556159 74167198 ~ 74213128 (-)
G1326095 NA other upstream 1919 74772299 ~ 74773953 (-)
G1326164 NA other upstream 282369 75052749 ~ 75053357 (-)
G1326996 NA other upstream 1228126 75998506 ~ 75999000 (-)
LOC110515635 LOC106576658 other upstream 2647941 77418263 ~ 77506802 (-)
G1328123 NA other upstream 3100899 77871279 ~ 77874604 (-)

Expression


Co-expression Network