XLOC_032213


Basic Information

Item Value
gene id XLOC_032213
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 39874524 ~ 39882227 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064912
GGGGAAAATAACGGACAAAAATCAATGTGTCTGAATTCTTCAACCGCTCATGACCATCCTTACGAGTTCTGtagaagagaaataaaaaaagaattagtGAGACAGTAATCCAAGAAAATTCAACCTGTTATATCAACAAACTGGCCCCTTGGAATTATAGGCTTCTGCCTGCATTCTAAGCTGTTTTACATATTGAGATTTTGCACAAAAATTATATTAGGAACAAATCTTGCTTTTCACTAATATTATGTTTGATAGGATAGGACACTATTTGGCCGAATACAACCATTtgaaatctggaatctgagggttaacaaaaaaaaaaaaatctaaatattgattaaaaagcccctttaaagttgtccaaattaacttCTAAACAATACATATTACTAATGAAAAGTTATCAAAATGTTTGATATACATCACAGTAAGGCACTCACAAAACCTTTACTTTATATTCTAATAAATTTAAGCATAACAGAAGAATCAATCATTTTCCcttatacaatgtattttttgctATTCCTACTAATTtacatgtgcaacatatttttTGGTCCAGAGTCTTTAAAAAACCCTCTCAAATTTGTAAATGGGGATTTTTGTAActtgtcaaataataataataataataattagcacaTTCTGCTTGGAATAATGATGTTCTATCTTACAAAATATTAATTGAAGcattagttaaaggtgcagtactgaagtttgacacccagtgggggaactaggtattgcattactgattcaaaacaaatgatgacagcatgttatattttacttgatatttttcaagatactattactagtattcagcttaaagtgcaatctaaaggtttaactagattaattaggcaggttagtgtaattaagcaagtcattgtataaagatggtttgttctgtagacaagacgataaaaaaattgcataagagtgctaataatattgaccttaaaatcaatattttctccaagttttttttttttttttttggcttttattatagctgaaataaaacaaataagactttctccagaagaaaaaatattatagtaaatactgtgaaaaattccttgctccataaacataattttgggaaatatatgaaaaaaaagcaattcacactattatttttattaaaactatatttgcATATGTGATGCATATTTTAGTGCACCTTGtgtgaaatttttttatttttatttatttttttttcatttttaatacctTTATTCAATAAACTTAACCGAACATCACTCATCAGGGCTCAAAATCAACTTTTTTGCTtagtagcactggtgctcctaactttaaaaatgtggtCGCACCAGCCAAATTTAGTCACACCCACCAAGATTTATGTGCactgttactacaagttttatattaacagatttattgcatttgaaatcatcCTGGCctttaaatgaaggattatataGAACCTCTCGCACTCAAAATTTGTAGATTCAGTGACACTGTTAAAAACTCcatcacacagactttaaagtgAATGGCTTTAAGAGTCTTATTCACTTTTCGAAGAGTGTATCATTAATCAgct

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064912 True 1576 lncRNA 0.29 2 39874524 39882227

Neighbor

gene id symbol gene type direction distance location
XLOC_032212 smarcc2 coding upstream 7854 39836474 ~ 39866670 (+)
XLOC_032211 c1ql4b coding upstream 43435 39812475 ~ 39831089 (+)
XLOC_032210 AL954698.1 coding upstream 156966 39700200 ~ 39717558 (+)
XLOC_032209 AL954698.2 coding upstream 206952 39666347 ~ 39667572 (+)
XLOC_032208 NA coding upstream 333076 39532478 ~ 39541448 (+)
XLOC_032214 endou coding downstream 22794 39905021 ~ 39912440 (+)
XLOC_032215 itpr1a coding downstream 40825 39923052 ~ 39991554 (+)
XLOC_032216 NA coding downstream 122368 40004595 ~ 40017137 (+)
XLOC_032217 CU467879.1 coding downstream 161388 40043615 ~ 40049445 (+)
XLOC_032218 slc4a8 coding downstream 472197 40354424 ~ 40405934 (+)
XLOC_032204 NA non-coding upstream 495790 39370335 ~ 39378734 (+)
XLOC_032194 NA non-coding upstream 919398 38953481 ~ 38955126 (+)
XLOC_032220 BX936393.2 non-coding downstream 566407 40448634 ~ 40451840 (+)
XLOC_032222 CU463231.2 non-coding downstream 593484 40475711 ~ 40481777 (+)
XLOC_032225 NA non-coding downstream 663631 40545858 ~ 40551992 (+)

Expression


Co-expression Network