XLOC_032214 (endou)


Basic Information

Item Value
gene id XLOC_032214
gene name endou
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 39905021 ~ 39912440 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062928
ATTTCAAGATAATCctatatattctatataaatgCCATAGTCATCTACAGAACCTGAACCCTGAAAGCtgatatttcacatttatttgggacatacaaaccaaaaaaaagagagtaatttaccttttttattattgtgtatttatttattagtttatttataaatcattattCGTCCTATTTTTATCATCTCACCACTTACAGTCTCATCTTTTTGCTCATAATTGAGTTATTTGGTCTTTGTTGCCCAATAATTATCACAACAAAGTGTTTGGGGGCATGGGAGGAGTTCCTAAtaatttcttgatttaagaaggTATAAAATCCAAAGTGGGTCTTACTCTGCAGTGTGTTTAACGGATCGTCTAACAATGAAGATCATCCTCATACTTTGTCTCAGCATCACCCTGATCTCTCAGGGCCACTTTGattCTCTGGACTTGTCATTGGCCAATGTGTCAGATGCAGAGATCAAGTCTCTGTCAGAGACGCTGTATAAGTTAGACTCAAACAGAGCCACGACCTCTGAGCTGCTGATTGATCCTCAGACACTGATTCCTTCTTCTCAGACCGGCTCCGGAAATGATCTCTCACCACAGCCATTGTTCAAGGTAGTGAGCAGTACATTGCTCTCTAAGCCCACATATAAAGCTTTCCTGGATCTGCTGGACAACTATAAAAAGATGACAGGAGAAGTGGAGGACGTGCCTTCACATGAAGAGCAGGAGCAGGACTCATTCCTCCAGCAGACCATGAACACAAACCTGGGGAAAGAGCTTTTCAATTTCCTACACTCTAAAGGTGTGTATGGATCACAGAGTGAGTTCCTCCAGGACCTGAAGATGATGTGGTTCGGCCTTTACTCGCGATCAGACGGAGTCAAACTGGACTCCAGTGGCTTCGAGCACATCTTTGTAGGTGAAATCAAGGGTGGTAAAGTGTCCGGTTTCCACAATTGGGTGCAGTTTTATCAGTGTGAGAAACAGGGAATCCTGAACTACTACAGCCACAGTTTTGACGGTCCTtggaCCACGTATCCTGATGTATTGGGAATGCAGTTTAACTGGGATGGATATTTCAAAGAGCTGGGTTCTGCCTTTATTGGCTGTAGTCCTGAGTTTGATCTGGCCATCTACAGCCTTTGCTACATCACCCGTCCTGGAAAGAAGTGTGATGTGAGTTTGGGAGGACACAGTCTGGGCATTCAGACCTACACATGGGACAAGAGCAGCTATGGAGACGGAAAGAAGTTCATCGGGTCTGCTTACCCCATAACACCCTGATTCAGTTGATCAGCACAatacaccatcaacaggttcaaCCAACACAACTCTCAAATATGAAAAATAGATCATTTTCTTGGTTGCTGGAGGAAATAAAAAGCATATTTCTCTG

Function

symbol description
endou Predicted to enable RNA binding activity and endoribonuclease activity. Predicted to be located in extracellular region. Orthologous to human ENDOU (endonuclease, poly(U) specific).

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0004518 nuclease activity molecular_function
GO:0004519 endonuclease activity molecular_function
GO:0004521 endoribonuclease activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070112-2012 Predicted to enable RNA binding activity and endoribonuclease activity. Predicted to be located in extracellular region. Orthologous to human ENDOU (endonuclease, poly(U) specific).

Ensembl:

ensembl_id ENSDARG00000044204

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062928 True 1394 mRNA 0.42 8 39905021 39912440

Neighbor

gene id symbol gene type direction distance location
XLOC_032213 NA coding upstream 22794 39874524 ~ 39882227 (+)
XLOC_032212 smarcc2 coding upstream 38351 39836474 ~ 39866670 (+)
XLOC_032211 c1ql4b coding upstream 73932 39812475 ~ 39831089 (+)
XLOC_032210 AL954698.1 coding upstream 187463 39700200 ~ 39717558 (+)
XLOC_032209 AL954698.2 coding upstream 237449 39666347 ~ 39667572 (+)
XLOC_032215 itpr1a coding downstream 10612 39923052 ~ 39991554 (+)
XLOC_032216 NA coding downstream 92155 40004595 ~ 40017137 (+)
XLOC_032217 CU467879.1 coding downstream 131175 40043615 ~ 40049445 (+)
XLOC_032218 slc4a8 coding downstream 441984 40354424 ~ 40405934 (+)
XLOC_032219 ghrl coding downstream 525547 40437987 ~ 40439615 (+)
XLOC_032208 NA non-coding upstream 363573 39532478 ~ 39541448 (+)
XLOC_032204 NA non-coding upstream 526287 39370335 ~ 39378734 (+)
XLOC_032220 BX936393.2 non-coding downstream 536194 40448634 ~ 40451840 (+)
XLOC_032222 CU463231.2 non-coding downstream 563271 40475711 ~ 40481777 (+)
XLOC_032225 NA non-coding downstream 633418 40545858 ~ 40551992 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_09339973_09344291 ENDOU coding CI01000340 null 9339911 ~ 9344393 (+)