G1326399


Basic Information

Item Value
gene id G1326399
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 75369846 ~ 75382171 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1514821
AACATTTTCCCGGCCACAACAATAAAATTTAACAAATAATCACAAAAAAAAGTGTGACCTTCCATTAGCTGTACATTACATACACTATAGTAAAACTGACCGAGCTTAAAAACCCACTACAACATTCATGTAGTGCTTCCAGCAGCATTTCACCAGAGGCAAAGACATTATACATATGTACACAAATCCACATTGAACCCATCGCAAATTTCACATATGTACAGCGTACGTGGCTGTGGTAAAGAGTACTAACATCTATCAACGTTGTTGCTCGGTTCAagattctgttttttttttaacttccTTCTTCTAAAAGTTGTGTAGTAGTAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGTAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGTAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTCGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTCGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTCGAGACAGTCTTCTAAAAGTTGTGTAGTAGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTCGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTCGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTCGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTCGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTCGAGAGAGTCAAGAGTTAAAATTCTTACAAgtagcaaaaaaaaaatatttttaaaaaaatgtcattttcaaaacatttacaatatagccaaaTGCCTGATTCTGCCACAGCTAAGTTACCTTACCGTGGAGCAGCACATTGGGCTGACTGACACACCGACTATAGACTGCAGATTGTGATAGGACAGTTGACACTGCACTGAAAAGAAGCTACTACATCCAACCGTGTGGAGCACACAGAGGTTTGGAGTTGTGCTACACCGTTCAGACAGCGGTGTAATAAAATAAACACTGTACTCCATCTCCCTACTTCCTTCTCAGCTGAAGACAAGCATTCtccagacagatagatagagatatagatagatatagctATGGCCCTTGAATGACCAAAAGTGGTTTGAGTGCCTCTTATTTTtctgagtaaaaaaaaaatgaggcAAAATCCACTGGCTTCATTTCCTCATAGCCACAAAACGTAGAAAGAAATGCACTTTGGTATGTAACCAAATGCCCTGGGTTATTCACATCACAATAAGAAGATATATCTATCACAACAGTCTGAGGTAaagattaaaatgtatttttgtccTTCTCTCCGGGAGTGATAAAATGAAGCTAACAGCTGTAACCCCTTGAATTGTTTTGATGTTAAGACAAGACAGAGGCTGTCAGTTGCTCAACCCTTTCAGAGCATAAGGTGATTGCTTCTTACTAAGCGTTCCCTGTTGGCAAAGGGTGTTtcccgaaatggcaccctattccctatatagtgcgctacttttgaccagagccctatcaaaagtagtgcactatatagggaaatagggtgccattgtggATGTGGCCCATGTAATACCTGTCGTTGTGCGGCCGCTTGGCTTTCTCCTCGCTACCACATCAGAGGTTAAGCCAGGAAGACTGTCTTTGGGCTTGAAGAAAACATCCATGAAAATGACTGTAAACATTTCACACATCTGTGAAATGGATGTATGTTCAGGGGAGATGTGCTGTAGGTAGGTGTATGTAGGGGAATGAAGTCATTATGTTACTGGTCTTGGGTTACTAAATGAATGGCATTAATAACCAAAGGCACATTGTATTCGACCTAAGGGCACGATTCCT
>TU1514822
AACATTTTCCCGGCCACAACAATAAAATTTAACAAATAATCACAAAAAAAAGTGTGACCTTCCATTAGCTGTACATTACATACACTATAGTAAAACTGACCGAGCTTAAAAACCCACTACAACATTCATGTAGTGCTTCCAGCAGCATTTCACCAGAGGCAAAGACATTATACATATGTACACAAATCCACATTGAACCCATCGCAAATTTCACATATGTACAGCGTACGTGGCTGTGGTAAAGAGTACTAACATCTATCAACGTTGTTGCTCGGTTCAagattctgttttttttttaacttccTTCTTCTAAAAGTTGTGTAGTAGTAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGTAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGTAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTCGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTCGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTCGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTCGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTCGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTCGAGAGAGTCAAGAGTTAAAATTCTTACAAgtagcaaaaaaaaaatatttttaaaaaaatgtcattttcaaaacatttacaatatagccaaaTGCCTGATTCTGCCACAGCTAAGTTACCTTACCGTGGAGCAGCACATTGGGCTGACTGACACACCGACTATAGACTGCAGATTGTGATAGGACAGTTGACACTGCACTGAAAAGAAGCTACTACATCCAACCGTGTGGAGCACACAGAGGTTTGGAGTTGTGCTACACCGTTCAGACAGCGGTGTAATAAAATAAACACTGTACTCCATCTCCCTACTTCCTTCTCAGCTGAAGACAAGCATTCtccagacagatagatagagatatagatagatatagctATGGCCCTTGAATGACCAAAAGTGGTTTGAGTGCCTCTTATTTTtctgagtaaaaaaaaaatgaggcAAAATCCACTGGCTTCATTTCCTCATAGCCACAAAACGTAGAAAGAAATGCACTTTGGTATGTAACCAAATGCCCTGGGTTATTCACATCACAATAAGAAGATATATCTATCACAACAGTCTGAGGTAaagattaaaatgtatttttgtccTTCTCTCCGGGAGTGATAAAATGAAGCTAACAGCTGTAACCCCTTGAATTGTTTTGATGTTAAGACAAGACAGAGGCTGTCAGTTGCTCAACCCTTTCAGAGCATAAGGTGATTGCTTCTTACTAAGCGTTCCCTGTTGGCAAAGGGTGTTtcccgaaatggcaccctattccctatatagtgcgctacttttgaccagagccctatcaaaagtagtgcactatatagggaaatagggtgccattgtggATGTGGCCCATGTAATACCTGTCGTTGTGCGGCCGCTTGGCTTTCTCCTCGCTACCACATCAGAGGTTAAGCCAGGAAGACTGTCTTTGGGCTTGAAGAAAACATCCATGAAAATGACTGTAAACATTTCACACATCTGTGAAATGGATGTATGTTCAGGGGAGATGTGCTGTAGGTAGGTGTATGTAGGGGAATGAAGTCATTATGTTACTGGTCTTGGGTTACTAAATGAATGGCATTAATAACCAAAGGCACATTGTATTCGACCTAAGGGCACGATTCCT
>TU1514823
ggacattaaaacttgtttttattTAATAACATTTTCCCGGCCACAACAATAAAATTTAACAAATAATCACAAAAAAAAGTGTGACCTTCCATTAGCTGTACATTACATACACTATAGTAAAACTGACCGAGCTTAAAAACCCACTACAACATTCATGTAGTGCTTCCAGCAGCATTTCACCAGAGGCAAAGACATTATACATATGTACACAAATCCACATTGAACCCATCGCAAATTTCACATATGTACAGCGTACGTGGCTGTGGTAAAGAGTACTAACATCTATCAACGTTGTTGCTCGGTTCAagattctgttttttttttaacttccTTCTTCTAAAAGTTGTGTAGTAGTAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGTAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGTAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTCGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTCGAGACTGTCTTCTAAAAGTTGTGTAGTAGAAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTCGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTCGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTCGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTCGAGAGAGTCAAGAGTTAAAATTCTTACAAgtagcaaaaaaaaaatatttttaaaaaaatgtcattttcaaaacatttacaatatagccaaaTGCCTGATTCTGCCACAGCTAAGTTACCTTACCGTGGAGCAGCACATTGGGCTGACTGACACACCGACTATAGACTGCAGATTGTGATAGGACAGTTGACACTGCACTGAAAAGAAGCTACTACATCCAACCGTGTGGAGCACACAGAGGTTTGGAGTTGTGCTACACCGTTCAGACAGCGGTGTAATAAAATAAACACTGTACTCCATCTCCCTACTTCCTTCTCAGCTGAAGACAAGCATTCtccagacagatagatagagatatagatagatatagctATGGCCCTTGAATGACCAAAAGTGGTTTGAGTGCCTCTTATTTTtctgagtaaaaaaaaaatgaggcAAAATCCACTGGCTTCATTTCCTCATAGCCACAAAACGTAGAAAGAAATGCACTTTGGTATGTAACCAAATGCCCTGGGTTATTCACATCACAATAAGAAGATATATCTATCACAACAGTCTGAGGTAaagattaaaatgtatttttgtccTTCTCTCCGGGAGTGATAAAATGAAGCTAACAGCTGTAACCCCTTGAATTGTTTTGATGTTAAGACAAGACAGAGGCTGTCAGTTGCTCAACCCTTTCAGAGCATAAGGTGATTGCTTCTTACTAAGCGTTCCCTGTTGGCAAAGGGTGTTtcccgaaatggcaccctattccctatatagtgcgctacttttgaccagagccctatcaaaagtagtgcactatatagggaaatagggtgccattgtggATGTGGCCCATGTAATACCTGTCGTTGTGCGGCCGCTTGGCTTTCTCCTCGCTACCACATCAGAGGTTAAGCCAGGAAGACTGTCTTTGGGCTTGAAGAAAACATCCATGAAAATGACTGTAAACATTTCACACATCTGTGAAATGGATGTATGTTCAGGGGAGATGTGCTGTAGGTAGGTGTATGTAGGGGAATGAAGTCATTATGTTACTGGTCTTGGGTTACTAAATGAATGGCATTAATAACCAAAGGCACATTGTATTCGACCTAAGGGCACGATTCCT
>TU1514824
AACATTTTCCCGGCCACAACAATAAAATTTAACAAATAATCACAAAAAAAAGTGTGACCTTCCATTAGCTGTACATTACATACACTATAGTAAAACTGACCGAGCTTAAAAACCCACTACAACATTCATGTAGTGCTTCCAGCAGCATTTCACCAGAGGCAAAGACATTATACATATGTACACAAATCCACATTGAACCCATCGCAAATTTCACATATGTACAGCGTACGTGGCTGTGGTAAAGAGTACTAACATCTATCAACGTTGTTGCTCGGTTCAagattctgttttttttttaacttccTTCTTCTAAAAGTTGTGTAGTAGTAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGTAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGTAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTCGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTCGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTCGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTCGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTCGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTCGAGAGAGTCAAGAGTTAAAATTCTTACAAgtagcaaaaaaaaaatatttttaaaaaaatgtcattttcaaaacatttacaatatagccaaaTGCCTGATTCTGCCACAGCTAAGTTACCTTACCGTGGAGCAGCACATTGGGCTGACTGACACACCGACTATAGACTGCAGATTGTGATAGGACAGTTGACACTGCACTGAAAAGAAGCTACTACATCCAACCGTGTGGAGCACACAGAGGTTTGGAGTTGTGCTACACCGTTCAGACAGCGGTGTAATAAAATAAACACTGTACTCCATCTCCCTACTTCCTTCTCAGCTGAAGACAAGCATTCtccagacagatagatagagatatagatagatatagctATGGCCCTTGAATGACCAAAAGTGGTTTGAGTGCCTCTTATTTTtctgagtaaaaaaaaaatgaggcAAAATCCACTGGCTTCATTTCCTCATAGCCACAAAACGTAGAAAGAAATGCACTTTGGTATGTAACCAAATGCCCTGGGTTATTCACATCACAATAAGAAGATATATCTATCACAACAGTCTGAGGTAaagattaaaatgtatttttgtccTTCTCTCCGGGAGTGATAAAATGAAGCTAACAGCTGTAACCCCTTGAATTGTTTTGATGTTAAGACAAGACAGAGGCTGTCAGTTGCTCAACCCTTTCAGAGCATAAGGTGATTGCTTCTTACTAAGCGTTCCCTGTTGGCAAAGGGTGTTtcccgaaatggcaccctattccctatatagtgcgctacttttgaccagagccctatcaaaagtagtgcactatatagggaaatagggtgccattgtggATGTGGCCCATGTAATACCTGTCGTTGTGCGGCCGCTTGGCTTTCTCCTCGCTACCACATCAGAGGTTAAGCCAGGAAGACTGTCTTTGGGCTTGAAGAAAACATCCATGAAAATGACTGTAAACATTTCACACATCTGTGAAATGGATGTATGTTCAGGGGAGATGTGCTGTAGGTAGGTGTATGTAGGGGAATGAAGTCATTATGTTACTGGTCTTGGGTTACTAAATGAATGGCATTAATAACCAAAGGCACATTGTATTCGACCTAAGGGCACGATTCCT
>TU1514825
taagagagaggtgTGTGACCTTCCATTAGCTGTACATTACATACACTATAGTAAAACTGACCGAGCTTAAAAACCCACTACAACATTCATGTAGTGCTTCCAGCAGCATTTCACCAGAGGCAAAGACATTATACATATGTACACAAATCCACATTGAACCCATCGCAAATTTCACATATGTACAGCGTACGTGGCTGTGGTAAAGAGTACTAACATCTATCAACGTTGTTGCTCGGTTCAagattctgttttttttttaacttccTTCTTCTAAAAGTTGTGTAGTAGTAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGTAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGTAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTCGAGACAGTCTTCTAAAAGTTGTGTAGTAGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTCGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTCGAGACTGTCTTCTAAAAGTTGTGTAGTAGAAGCTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTCGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTCGAGAGAGTCAAGAGTTAAAATTCTTACAAgtagcaaaaaaaaaatatttttaaaaaaatgtcattttcaaaacatttacaatatagccaaaTGCCTGATTCTGCCACAGCTAAGTTACCTTACCGTGGAGCAGCACATTGGGCTGACTGACACACCGACTATAGACTGCAGATTGTGATAGGACAGTTGACACTGCACTGAAAAGAAGCTACTACATCCAACCGTGTGGAGCACACAGAGGTTTGGAGTTGTGCTACACCGTTCAGACAGCGGTGTAATAAAATAAACACTGTACTCCATCTCCCTACTTCCTTCTCAGCTGAAGACAAGCATTCtccagacagatagatagagatatagatagatatagctATGGCCCTTGAATGACCAAAAGTGGTTTGAGTGCCTCTTATTTTtctgagtaaaaaaaaaatgaggcAAAATCCACTGGCTTCATTTCCTCATAGCCACAAAACGTAGAAAGAAATGCACTTTGGTATGTAACCAAATGCCCTGGGTTATTCACATCACAATAAGAAGATATATCTATCACAACAGTCTGAGGTAaagattaaaatgtatttttgtccTTCTCTCCGGGAGTGATAAAATGAAGCTAACAGCTGTAACCCCTTGAATTGTTTTGATGTTAAGACAAGACAGAGGCTGTCAGTTGCTCAACCCTTTCAGAGCATAAGGTGATTGCTTCTTACTAAGCGTTCCCTGTTGGCAAAGGGTGTTtcccgaaatggcaccctattccctatatagtgcgctacttttgaccagagccctatcaaaagtagtgcactatatagggaaatagggtgccattgtggATGTGGCCCATGTAATACCTGTCGTTGTGCGGCCGCTTGGCTTTCTCCTCGCTACCACATCAGAGGTTAAGCCAGGAAGACTGTCTTTGGGCTTGAAGAAAACATCCATGAAAATGACTGTAAACATTTCACACATCTGTGAAATGGATGTATGTTCAGGGGAGATGTGCTGTAGGTAGGTGTATGTAGGGGAATGAAGTCATTATGTTACTGGTCTTGGGTTACTAAATGAATGGCATTAATAACCAAAGGCACATTGTATTCGACCTAAGGGCACGATTCCT

Function

NR:

description
PREDICTED: uncharacterized protein LOC106605481, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1514821 False 2144 lncRNA 0.39 2 75369846 75372025
TU1514822 False 1784 lncRNA 0.40 2 75369846 75372025
TU1514823 False 1920 lncRNA 0.39 2 75369846 75372052
TU1514824 False 1964 lncRNA 0.40 2 75369846 75372025
TU1514825 True 1962 lncRNA 0.40 5 75369846 75382171

Neighbor

gene id symbol gene type direction distance location
LOC118938932 NA coding downstream 177912 75190621 ~ 75191934 (-)
LOC110490689 rap1b coding downstream 381515 74883029 ~ 74988331 (-)
LOC110514333 nu107 coding downstream 493527 74806009 ~ 74876319 (-)
LOC110516942 LOC106576641 coding downstream 563985 74800563 ~ 74805861 (-)
LOC110514334 mdm2 coding downstream 572233 74774447 ~ 74797613 (-)
LOC110518764 LOC106576636 coding upstream 138130 75520301 ~ 75547039 (-)
LOC110490682 cand1 coding upstream 182437 75564608 ~ 75648161 (-)
LOC110513781 LOC106599032 coding upstream 1095378 76477549 ~ 76499886 (-)
LOC118936278 irak3 coding upstream 1117948 76500119 ~ 76525322 (-)
LOC110514961 LOC106590998 coding upstream 1292950 76675121 ~ 76681446 (-)
G1326396 NA non-coding downstream 7916 75360967 ~ 75361930 (-)
G1326394 NA non-coding downstream 10383 75357929 ~ 75359463 (-)
G1326391 NA non-coding downstream 18543 75350942 ~ 75351303 (-)
G1326387 NA non-coding downstream 22542 75347024 ~ 75347304 (-)
G1326372 NA non-coding downstream 65989 75303487 ~ 75303857 (-)
G1326411 NA non-coding upstream 8188 75390359 ~ 75391095 (-)
G1326432 NA non-coding upstream 25988 75408159 ~ 75408529 (-)
G1326843 NA non-coding upstream 75836 75458007 ~ 75498229 (-)
G1326851 NA non-coding upstream 117428 75499599 ~ 75499867 (-)
G1326859 NA non-coding upstream 135166 75517337 ~ 75517880 (-)
G1326164 NA other downstream 316489 75052749 ~ 75053357 (-)
G1326095 NA other downstream 595893 74772299 ~ 74773953 (-)
G1326070 NA other downstream 646446 74722589 ~ 74723400 (-)
LOC118938855 LOC106576675 other downstream 762530 74602942 ~ 74607316 (-)
G1325915 b2m other downstream 974278 74375301 ~ 74395568 (-)
G1326996 NA other upstream 616335 75998506 ~ 75999000 (-)
LOC110515635 LOC106576658 other upstream 2036150 77418263 ~ 77506802 (-)
G1328123 NA other upstream 2489108 77871279 ~ 77874604 (-)
LOC118938867 LOC106576670 other upstream 2916405 78298576 ~ 78452504 (-)
G1328815 NA other upstream 3380928 78763099 ~ 78766048 (-)

Expression


Co-expression Network