G1326917


Basic Information

Item Value
gene id G1326917
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 75695452 ~ 75696172 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1515536
ACAAGGTCTCCCAGGGACTGCCTGTTTATGTCCTCACTCCcctgagagaggtcagagagagaggagaggtgagggaatGATGGGgtaggagagaggtgagaggtgaaagaggagagagacagaatcataatgaaaagagagagagagacagaatcacaatgaaaagagagagagagacagaatcacaatgaaaagagagagagagacagaatcacaatgaaaagagagaaagagacagaatcacaatgaaaagagagagagacagaatcacaatgaaaagagagagacagaatcacaatgaaaagagagagacagaatcacaatgaaaagagagagagaatcacaatgaaaagagagagagagagaatcacaatgaaaagagagagagagagagaatcacaatgaaaagagagagagagagacagaat
>TU1515537
ACAAGGTCTCCCAGGGACTGCCTGTTTATGTCCTCACTCCcctgagagaggtcagagagagaggagaggtgagggaatGATGGGgtaggagagaggtgagaggtgaaagaggagagagacagaatcataatgaaaagagagagagagacagaatcacaatgaaaagagagagagagacagaatcacaatgaaaagagagagacagaatcacaatgaaaagagagagagacagaatcacaatgaaaagagagagacagaatcacaatgaaaagagagagacagaatcacaatgaaaagagagagagaatcacaatgaaaagagagagagagagaatcacaatgaaaagagagagagagagagaatcacaatgaaaagagagagagagagacagaat
>TU1515538
ACAAGGTCTCCCAGGGACTGCCTGTTTATGTCCTCACTCCcctgagagaggtcagagagagaggagaggtgagggaatGATGGGgtaggagagaggtgagaggtgaaagaggagagagacagaatcataatgaaaagagagagagagacagaatcacaatgaaaagagagagagagacagaatcacaatgaaaagagagagagagacagaatcacaatgaaaagagagagagagaatcacaatgaaaagagagagagagacagaatcacAATGAAAAgagagagagagaatcacaatgaaaagagagagagagagagaatcacaatgaaaagagagagagagagacagaat
>TU1515540
ACAAGGTCTCCCAGGGACTGCCTGTTTATGTCCTCACTCCcctgagagaggtcagagagagaggagaggtgagggaatGATGGGgtaggagagaggtgagaggtgaaagaggagagagacagaatcataatgaaaagagagagagagacagaatcacaatgaaaagagagagagacagaatcacaatgaaaagagagagagacagaatcacaatgaaaagagagaaagagacagaatcacaatgaaaagagagagacagaatcacaatgaaaagagagagagacagaatcacaatgaaaagagagagagaatcacaatgaaaagagagagagagagaatcacaatgaaaagagagagagagagagaatcacaatgaaaagagagagagagagacagaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1515536 False 428 lncRNA 0.42 4 75695452 75696172
TU1515537 False 395 lncRNA 0.42 4 75695452 75696172
TU1515538 False 351 lncRNA 0.43 3 75695452 75696172
TU1515540 True 399 lncRNA 0.42 4 75695452 75696172

Neighbor

gene id symbol gene type direction distance location
LOC110490682 cand1 coding downstream 47291 75564608 ~ 75648161 (-)
LOC110518764 LOC106576636 coding downstream 148413 75520301 ~ 75547039 (-)
LOC118938932 NA coding downstream 503518 75190621 ~ 75191934 (-)
LOC110490689 rap1b coding downstream 707121 74883029 ~ 74988331 (-)
LOC110514333 nu107 coding downstream 819133 74806009 ~ 74876319 (-)
LOC110513781 LOC106599032 coding upstream 781377 76477549 ~ 76499886 (-)
LOC118936278 irak3 coding upstream 803947 76500119 ~ 76525322 (-)
LOC110514961 LOC106590998 coding upstream 978949 76675121 ~ 76681446 (-)
LOC110512778 trhde coding upstream 1175295 76871462 ~ 77277803 (-)
LOC118938902 NA coding upstream 1655106 77351278 ~ 77352450 (-)
G1326915 NA non-coding downstream 5793 75689302 ~ 75689659 (-)
G1326899 NA non-coding downstream 35098 75659717 ~ 75660354 (-)
G1326896 NA non-coding downstream 42897 75651783 ~ 75652555 (-)
G1326885 NA non-coding downstream 67301 75627502 ~ 75628151 (-)
G1326918 NA non-coding upstream 1566 75697738 ~ 75699039 (-)
G1326942 NA non-coding upstream 82592 75778764 ~ 75779008 (-)
G1326948 NA non-coding upstream 102468 75798640 ~ 75798919 (-)
G1326949 NA non-coding upstream 107481 75803653 ~ 75803860 (-)
G1326952 NA non-coding upstream 135679 75831851 ~ 75832222 (-)
G1326164 NA other downstream 642095 75052749 ~ 75053357 (-)
G1326095 NA other downstream 921499 74772299 ~ 74773953 (-)
G1326070 NA other downstream 972052 74722589 ~ 74723400 (-)
LOC118938855 LOC106576675 other downstream 1088136 74602942 ~ 74607316 (-)
G1325915 b2m other downstream 1299884 74375301 ~ 74395568 (-)
G1326996 NA other upstream 302334 75998506 ~ 75999000 (-)
LOC110515635 LOC106576658 other upstream 1722149 77418263 ~ 77506802 (-)
G1328123 NA other upstream 2175107 77871279 ~ 77874604 (-)
LOC118938867 LOC106576670 other upstream 2602404 78298576 ~ 78452504 (-)
G1328815 NA other upstream 3066927 78763099 ~ 78766048 (-)

Expression


Co-expression Network