XLOC_032222 (CU463231.2)


Basic Information

Item Value
gene id XLOC_032222
gene name CU463231.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 40475711 ~ 40481777 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062941
CAGGAAGTCAAGACTCGTCCGTGAGCGTGTGTGCGCGCGCCCGTGATTCTCGCCTGCTGTCCTCCTGACTCCTGGACTGCTGTAACGGTGCAAAATGAAGTGGGAGAATGCAGTAGTTGAGGCATAATCTCGTGTTATAATCCCGTGTGAATTACAACTTCATTGTTAACAAATGGATTTCAACCGTCATTGCCGTGTCTCAGATGCCAGATGATGTTCGACAAGAAGGACAGAGCTTCAGGAGCATCCGCCGAGCCTCAGAGGACACTTCCAGGCTTAGTCACCTGTCCCTGAAGATTGTCGGGATCATCAAAAACCCAAAACATAAGCAGCATTCAAACATctcagtgcaaaaaaaaatgtacttcaaCATGCTTCACAATAGCAAAAGTCTAAGTTCTCCAAACTCAAGAGAGCAAACACCGAAAGTGCACAGAAAAATTGTAGTGGAGCATAAGGGGTCACAAGAGAGGAGGACAAATAAAATAGTATATCCAGAAAGAAGACTACAAGTTGATGAGACAGAAGTGGAAATAATTCTGGAACAGGGAGATGAGTTAGGATGCGGGGATGAGCTAGCACATGGAGTTGATTTAGATTTAGCGGAGGGTTTAGAAAAAGACAAGCCATTGGAGTCGGAGGATGATGAAGTGTCAGTTGACCTTCATTCTGATTTATATAGTAAGAAAGAAGTAGATTATAACATAGTAGCAGAGGAGCTACAAGTAAAGGACATGGGGAAGGCAGCATGGGGGCTGactaaaaatggtaaaaataaaagttCTCGTAACGTTCAGCTGGCTTCTAATGCAGTTTATGAAAGCTTAGCACACGCAGATCGATTACTTTTTGACAAAATGTGCActggtaaaactttaattgaatcattttacCCTAGTGGTATAGTAGCAGACAGGATGTTTTCAAGTGAAGAGGACATTGATGTGATGTTCCCAGATATTTGTGATGCAGGGGAGGCATTAGCAGACAAAGATGGACTTTCCGAGTGTGACCTCTTTGAACAAACGGAGCCTCTTCAATTAACAGAGACAAAGGACAACATTAATGGAGATATTATGATGCTTACCATTGAGGAGGGATTGAACAGCTCTGATTTATCCTCAGTCGAGGAAGAGTATGATGAAATGCAGATGGAAAAAGAGCTGATGGaggaacaaataaacaaatctgtTGCAGGCAATAAAGCTGCTATTCCCTCAAACAGCGAAGAGTCTGATCATCCCTCAAATTCATCTTCATCTTCTCAGACTTGTGTTCTTTCAGGGTCCGATACAACCTTGGatgaaataacaaataacaactaCAATAGCAAAAATATGACTGAAAGCGATGAAGCAATTTCTGCCATCTTAAATCTTGTTCTTGTTCAGCAGCAACCTGAAACCCAAGACCAAAATTCTCAACAATATCAAGACGAAGAAAGCAATGGGGAAGACAAAGAAGAACAAGTGGTTGACAACCTGAGTGAATCTGAAGGAAAAGAACTCATGGTAGACAATGTGTATGAGGAGACAGAGCCAAAAATCCAAGCCAAGGACTTCCTCCAGAACAGGAAGTACTTTATGAGTCGTTCTATATCTGTGGAAACCCCCGGTAAGAGAGCTGACCTACTGAGCGGCCTTCCAGCAGGAAATGGGCGGCTTTTGCTACACCCACAGGCCTTCTATACAGACCAGTGTTTGTTTGGAGATAGCAGACCTGCACTGACAGGTTCGTTAGGATGTCTTTCACAAGGCACACGCACATCAAAAGTCACTCGAGTGGATATACCGCCCCCTTTTGAACTGGCATCCATCACGAAGCGACCAATCAGAAAGAGCTCACCGTCTATTCCCAATGAAATCTCTGCTTCATGTAAAAAGCCTGATTTTGGGTTCAAGCGATACCTTCTTCCATTGCGGTTCCTTAGGAAATCTGATCGAAAGAGTATGATGGATACTCGCTCCATCTCTTCCAGATCCTCATCCGAATCAAGTCCGCAAGGATCATGTAGACGCATGGATTTTATCCGACATAACATGGGCAGCCCAGAGTTGCAGAGGAGTCCAGATTGCACTCCGCCGGTGTCCCCTTCTTCCTTTCTCTCTCATAGGAATAGACGAAAAGAGGGACTAAATTTCTCCCTAAATAACGATTTGGCTTGTAGCTCCATATCGATTGAGCCAGGCTTCCTCTCTGAGCCCCTTCCCCTTTCCAAACCTCGATCATTTTCATCTCCGAATACAGATTCCTCTGAATACGAGAATGTTCAAAATGTTGCTTCTCACTATGAGAATGTGCAGATTCGCCTCCTGAATCCTGTCATTCAGGGTCAGCGAAATCAGAGTTCACCCAGTGACACTGATGGTTACGTGGACATGAGCAGTCTGCCAGGCTTCCAAGGCAAAAGTCAGTCATCTGAGCAAGAGACAGATAGTCTCTACACTTTCTGTTCTCCAAATGTGAGGGCAGATGGAACGGTGGGTGTGTTTGTAGGCGTGGCTTGTGCACAAGAGAAAAAGACAACGGCTCCTGACAAACTGGTGAGCTTATTGTGGTTGCTTCTCCAAAGATATCTACATACatga
>TCONS_00062942
TTCCAGCTCTgctgtaaatattaatatttacttttatgcATTGTCTTTCAGAGCTTCAGGAGCATCCGCCGAGCCTCAGAGGACACTTCCAGGCTTAGTCACCTGTCCCTGAAGATTGTCGGGATCATCAAAAACCCAAAACATAAGCAGCATTCAAACATctcagtgcaaaaaaaaatgtacttcaaCATGCTTCACAATAGCAAAAGTCTAAGTTCTCCAAACTCAAGAGAGCAAACACCGAAAGTGCACAGAAAAATTGTAGTGGAGCATAAGGGGTCACAAGAGAGGAGGACAAATAAAATAGTATATCCAGAAAGAAGACTACAAGTTGATGAGACAGAAGTGGAAATAATTCTGGAACAGGGAGATGAGTTAGGATGCGGGGATGAGCTAGCACATGGAGTTGATTTAGATTTAGCGGAGGGTTTAGAAAAAGACAAGCCATTGGAGTCGGAGGATGATGAAGTGTCAGTTGACCTTCATTCTGATTTATATAGTAAGAAAGAAGTAGATTATAACATAGTAGCAGAGGAGCTACAAGTAAAGGACATGGGGAAGGCAGCATGGGGGCTGactaaaaatggtaaaaataaaagttCTCGTAACGTTCAGCTGGCTTCTAATGCAGTTTATGAAAGCTTAGCACACGCAGATCGATTACTTTTTGACAAAATGTGCActggtaaaactttaattgaatcattttacCCTAGTGGTATAGTAGCAGACAGGATGTTTTCAAGTGAAGAGGACATTGATGTGATGTTCCCAGATATTTGTGATGCAGGGGAGGCATTAGCAGACAAAGATGGACTTTCCGAGTGTGACCTCTTTGAACAAACGGAGCCTCTTCAATTAACAGAGACAAAGGACAACATTAATGGAGATATTATGATGCTTACCATTGAGGAGGGATTGAACAGCTCTGATTTATCCTCAGTCGAGGAAGAGTATGATGAAATGCAGATGGAAAAAGAGCTGATGGaggaacaaataaacaaatctgtTGCAGGCAATAAAGCTGCTATTCCCTCAAACAGCGAAGAGTCTGATCATCCCTCAAATTCATCTTCATCTTCTCAGACTTGTGTTCTTTCAGGGTCCGATACAACCTTGGatgaaataacaaataacaactaCAATAGCAAAAATATGACTGAAAGCGATGAAGCAATTTCTGCCATCTTAAATCTTGTTCTTGTTCAGCAGCAACCTGAAACCCAAGACCAAAATTCTCAACAATATCAAGACGAAGAAAGCAATGGGGAAGACAAAGAAGAACAAGTGGTTGACAACCTGAGTGAATCTGAAGGAAAAGAACTCATGGTAGACAATGTGTATGAGGAGACAGAGCCAAAAATCCAAGCCAAGGACTTCCTCCAGAACAGGAAGTACTTTATGAGTCGTTCTATATCTGTGGAAACCCCCGGTAAGAGAGCTGACCTACTGAGCGGCCTTCCAGCAGGAAATGGGCGGCTTTTGCTACACCCACAGGCCTTCTATACAGACCAGTGTTTGTTTGGAGATAGCAGACCTGCACTGACAGGTTCGTTAGGATGTCTTTCACAAGGCACACGCACATCAAAAGTCACTCGAGTGGATATACCGCCCCCTTTTGAACTGGCATCCATCACGAAGCGACCAATCAGAAAGAGCTCACCGTCTATTCCCAATGAAATCTCTGCTTCATGTAAAAAGCCTGATTTTGGGTTCAAGCGATACCTTCTTCCATTGCGGTTCCTTAGGAAATCTGATCGAAAGAGTATGATGGATACTCGCTCCATCTCTTCCAGATCCTCATCCGAATCAAGTCCGCAAGGATCATGTAGACGCATGGATTTTATCCGACATAACATGGGCAGCCCAGAGTTGCAGAGGAGTCCAGATTGCACTCCGCCGGTGTCCCCTTCTTCCTTTCTCTCTCATAGGAATAGACGAAAAGAGGGACTAAATTTCTCCCTAAATAACGATTTGGCTTGTAGCTCCATATCGATTGAGCCAGGCTTCCTCTCTGAGCCCCTTCCCCTTTCCAAACCTCGATCATTTTCATCTCCGAATACAGATTCCTCTGAATACGAGAATGTTCAAAATGTTGCTTCTCACTATGAGAATGTGCAGATTCGCCTCCTGAATCCTGTCATTCAGGGTCAGCGAAATCAGAGTTCACCCAGTGACACTGATGGTTACGTGGACATGAGCAGTCTGCCAGGCTTCCAAGGCAAAAGTCAGTCATCTGAGCAAGAGACAGATAGTCTCTACACTTTCTGTTCTCCAAATGTGAGGGCAGATGGAACGGTGGGTGTGTTTGTAGGCGTGGCTTGTGCACAAGAGAAAAAGACAACGGCTCCTGACAAACTGACCGTCAGCTGCTCCAGAGCCTTCTATAGTGCCAAAGAGCTTCTGGATAGCGAAGCCCAGTAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117238

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062941 False 2588 lncRNA 0.44 3 40475711 40481661
TCONS_00062942 True 2424 lncRNA 0.43 3 40477374 40481777

Neighbor

gene id symbol gene type direction distance location
XLOC_032221 zgc:152986 coding upstream 5190 40467562 ~ 40470521 (+)
XLOC_032220 BX936393.2 coding upstream 23871 40448634 ~ 40451840 (+)
XLOC_032219 ghrl coding upstream 36096 40437987 ~ 40439615 (+)
XLOC_032218 slc4a8 coding upstream 69777 40354424 ~ 40405934 (+)
XLOC_032217 CU467879.1 coding upstream 426266 40043615 ~ 40049445 (+)
XLOC_032223 fgd5b coding downstream 553 40482330 ~ 40499799 (+)
XLOC_032224 prkcda coding downstream 41593 40523370 ~ 40544207 (+)
XLOC_032225 NA coding downstream 64081 40545858 ~ 40551992 (+)
XLOC_032226 ddi2 coding downstream 72774 40554551 ~ 40563509 (+)
XLOC_032227 si:ch73-15b2.5 coding downstream 82071 40563848 ~ 40572550 (+)
XLOC_032216 NA non-coding upstream 458574 40004595 ~ 40017137 (+)
XLOC_032213 NA non-coding upstream 593484 39874524 ~ 39882227 (+)
XLOC_032210 AL954698.1 non-coding upstream 758153 39700200 ~ 39717558 (+)
XLOC_032231 NA non-coding downstream 171128 40652905 ~ 40656046 (+)
XLOC_032242 NA non-coding downstream 502820 40984597 ~ 40986135 (+)
XLOC_032245 NA non-coding downstream 598733 41080510 ~ 41082985 (+)
XLOC_032251 AL732567.2 non-coding downstream 712910 41194687 ~ 41194801 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_09649643_09655912 NA coding CI01000340 null 9649643 ~ 9655912 (+)