XLOC_032227 (si:ch73-15b2.5)


Basic Information

Item Value
gene id XLOC_032227
gene name si:ch73-15b2.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 40563848 ~ 40572550 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062948
GTGAAAGCGCTCTTCTGAATCGATTAGACTCACAAGTTGTTGCGGTTGTTTAGGAAGTAACCTGCCTCGGTGCCGCTCCAGCATTTGTGAGTAAGAAGAGGGTTTTCACCACGATAAATAATACTCATTTCTGTTCTTGGGCGTGGAAAAAGTTTACCGTATTCACATGGCTCATGTTATGGAGGATGAGAGATTCTGGAATCTGACTGGAACTGAAGTTTTAGACCGCACTGCTCGACCCGCGATGGATGAATATGACCCTCCAACAAAAGAGAAAGACAGTGAGGCGTGTGGTGGAAATTACTGTACATCTGAAGGGTTGGCTGAAACTCTTAGATCTGTTGCAAGCTCACAATTGTGGAGCTTTGTAGGGTATTCTCTGCCCATTGCATCCCTCTTCTCTGCGGAGAGCTACAGTCATCTGGAATTTTCTGACATGAACAGTGATGACAGTGAGGTGAAAAGTATAAGTGAAATGGACGTCAGTGTACAACAAGAGAAAACATATGTTGCCAAGTTTGAATCCGAGTACATCAATAGTTCTGTCCCTTTATATCAGGAGTATTGGATGCGCTCCTTCAAGAAGGACTTAAACCGAGCACAGCTTGCAGGACTTTCAGAATTGGTTGCATCTGTGTGTCTCCCTGGTCTGAAAACTCCCCCATCTTTAAGCCCGACCTCGGTTTTGAGCCCACCAGGGCCTCAGTCCAAACCATATGCTCTATGGCAGGAGTTACCACAAGCAAAGAGTGTGCTGTACTCCCTCAGTGCACAGGACATCCAGCTTCAGGAGGCCATGTTTGAGCTGATTGTGTCCGAGGCCTCGTATCAGAAGAGTCTGATAGTAGCGCTGAATGTGTTTCAGTGCTCAGCAGAACTCAAACACATCCTCACCCGAGTACAGCATCATGTTCTGTTCTCCAACCTAAAAGATGTCTGCAGAGTCAGTGAACGGTTTCTGCAGGACCTGGAGTCTCATCTCAGGCAGGATGTGGTGATGTCACAGGTTGGTGACGTTGTTTTGAACCACCAAAAATCCTTCCAACAAGTCTATGTGCCGTATATCACCAACATGATGTACCAGGAGGCCCTCGTCACTCAGCTGCTACAGGAAAACAGGAAATTTGCACCAATCCTAAAGAAACTAGAGAAGGACCCACAATGCCAGAGACAGACGCTTAAGTCTTTTCTAATTCTTCCCTTTCAGAGGATCACACGAATAACTCTCTTGCTTGAGAATGTCCTCAAGAGAGCTCGGGGTGTTAGTCTCAATGTCCCTAATGTGAAGGAAGCCATTGAAGCTGTACGGAAGATAGTGGAAGAGTGTGACACAAGAGTCCAGAAAATGAAAAGAACAGAGCTGCTCGTTTCTTTGGACAAGTTAGTGGACTTCGGAAATGTCAAGGCTGTTCCATTAATCACCAGAGGACGTCATTTGGTTCAGGAGGGAACTTTGAAGCAATTAATAATTGGTGGCAATCACAAGGCATCTATAGTCTCTCGCAAAGATTTATACATACACCTTTTCAATGATCTTTTGCTCCTCTCTGTTAGAAGCGGACAAAGATTCCTTGTGCAGGACCATGCGTTATTTCCTGATCATGTACGCGCTGAGGAAATCAAAACTACTATTTTGGGATTACCCTCTGAATCCCTCCTGCTTCATCTGACTAAGAAGCATAATAGATCGTCCTCTGCCCTGATACTTGCTGCACGCAACGAgTTGGAAAAAGAAACCTGGATTAAAGCTCTGTCATCAAAGTAGGAGACTGCCATTATGGGAAAGCTACGAAGGATGTTCTTTAAGGAAAGAATCAAACTGTGGATCATAAAATAGACATTATAATtcatgcttttaatttttttggaaTATTGTTCTGATagtgtgtatattatatatttattataaataaatggctGTAGGAAACGTT
>TCONS_00062949
GATcgctttcttttctttctcttaGTACATCTGAAGGGTTGGCTGAAACTCTTAGATCTGTTGCAAGCTCACAATTGTGGAGCTTTGTAGGGTATTCTCTGCCCATTGCATCCCTCTTCTCTGCGGAGAGCTACAGTCATCTGGAATTTTCTGACATGAACAGTGATGACAGTGAGGTGAAAAGTATAAGTGAAATGGACGTCAGTGTACAACAAGAGAAAACATATGTTGCCAAGTTTGAATCCGAGTACATCAATAGTTCTGTCCCTTTATATCAGGAGTATTGGATGCGCTCCTTCAAGAAGGACTTAAACCGAGCACAGCTTGCAGGACTTTCAGAATTGGTTGCATCTGTGTGTCTCCCTGGTCTGAAAACTCCCCCATCTTTAAGCCC
>TCONS_00062950
ATGAACAGTGATGACAGTGAGGTGAAAAGTATAAGTGAAATGGACGTCAGTGTACAACAAGAGAAAACATATGTTGCCAAGTTTGAATCCGAGTACATCAATAGTTCTGTCCCTTTATATCAGGAGTATTGGATGCGCTCCTTCAAGAAGGACTTAAACCGAGCACAGCTTGCAGGACTTTCAGAATTGGTTGCATCTGTGTGTCTCCCTGGTCTGAAAACTCCCCCATCTTTAAGCCCGACCTCGGTTTTGAGCCCACCAGGGCCTCAGTCCAAACCATATGCTCTATGGCAGGAGTTACCACAAGCAAAGAGTGTGCTGTACTCCCTCAGTGCACAGGACATCCAGCTTCAGGAGGCCATGTTTGAGCTGATTGTGTCCGAGGCCTCGTATCAGAAGAGTCTGATAGTAGCGCTGAATGTGTTTCAGTGCTCAGCAGAACTCAAACACATCCTCACCCGAGTACAGCATCATGTTCTGTTCTCCAACCTAAAAGATGTCTGCAGAGTCAGTGAACGGTTTCTGCAGGACCTGGAGTCTCATCTCAGGCAGGATGTGGTGATGTCACAGGTTGGTGACGTTGTTTTGAACCACCAAAAATCCTTCCAACAAGTCTATGTGCCGTATATCACCAACATGATGTACCAGGAGGCCCTCGTCACTCAGCTGCTACAGGAAAACAGGAAATTTGCACCAATCCTAAAGAAACTAGAGAAGGACCCACAATGCCAGAGACAGACGCTTAAGTCTTTTCTAATTCTTCCCTTTCAGAGGATCACACGAATAACTCTCTTGCTTGAGAATGTCCTCAAGAGAGCTCGGGGTGTTAGTCTCAATGTCCCTAATGTGAAGGAAGCCATTGAAGCTGTACGGAAGATAGTGGAAGAGTGTGACACAAGAGTCCAGAAAATGAAAAGAACAGAGCTGCTCGTTTCTTTGGACAAGTTAGTGGACTTCGGAAATGTCAAGGCTGTTCCATTAATCACCAGAGGACGTCATTTGGTTCAGGAGGGAACTTTGAAGCAATTAATAATTGGTGGCAATCACAAGGCATCTATAGTCTCTCGCAAAGATTTATACATACACCTTTTCAATGATCTTTTGCTCCTCTCTGTTAGAAGCGGACAAAGATTCCTTGTGCAGGACCATGCGTTATTTCCTGATCATGTACGCGCTGAGGAAATCAAAACTACTATTTTGGGATTACCCTCTGAATCCCTCCTGCTTCATCTGACTAAGAAGCATAATAGATCGTCCTCTGCCCTGATACTTGCTGCACGCAACGAgTTGGAAAAAGAAACCTGGATTAAAGCTCTGTCATCAAAGTAG
>TCONS_00062951
AGTCTCATCTCAGGCAGGATGTGGTGATGTCACAGGTTGGTGACGTTGTTTTGAACCACCAAAAATCCTTCCAACAAGTCTATGTGCCGTATATCACCAACATGATGTACCAGGAGGCCCTCGTCACTCAGCTGCTACAGGAAAACAGGAAATTTGCACCAATCCTAAAGAAACTAGAGAAGGACCCACAATGCCAGAGACAGACGCTTAAGTCTTTTCTAATTCTTCCCTTTCAGAGGATCACACGAATAACTCTCTTGCTTGAGAATGTCCTCAAGAGAGCTCGGGGTGTTAGTCTCAATGTCCCTAATGTGAAGGAAGCCATTGAAGCTGTACGGAAGATAGTGGAAGAGTGTGACACAAGAGTCCAGAAAATGAAAAGAACAGAGCTGCTCGTTTCTTTGGACAAGTTAGTGGACTTCGGAAATGTCAAGGCTGTTCCATTAATCACCAGAGGACGTCATTTGGTTCAGGAGGGAACTTTGAAGCAATTAATAATTGGTGGCAATCACAAGGCATCTATAGTCTCTCGCAAAGATTTATACATACACCTTTTCAATGATCTTTTGCTCCTCTCTGTTAGAAGCGGACAAAGATTCCTTGTGCAGGACCATGCGTTATTTCCTGATCATGTACGCGCTGAGGAAATCAAAACTACTATTTTGGGATTACCCTCTGAATCCCTCCTGCTTCATCTGACTAAGAAGCATAATAGATCGTCCTCTGCCCTGATACTTGCTGCACGCAACGAGTAATTAGTCTTGGCAATGGTTCATATTGTGTAGAACTAAGGGTTTACAAAATTGGGGGCCACAAGGCAGTGCTTAGGGGGCTGTAAAAtgtaaagttaattatttttgaataaa

Function

symbol description
si:ch73-15b2.5 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in activation of GTPase activity. Predicted to be active in cytoplasm and nucleus.

GO:

id name namespace
GO:0090630 activation of GTPase activity biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5406 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in activation of GTPase activity. Predicted to be active in cytoplasm and nucleus.

Ensembl:

ensembl_id ENSDARG00000079467

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062948 False 1931 mRNA 0.44 12 40563848 40572550
TCONS_00062949 False 394 lncRNA 0.44 3 40564274 40566521
TCONS_00062950 False 1329 mRNA 0.45 11 40564429 40572384
TCONS_00062951 True 866 lncRNA 0.43 6 40570779 40572104

Neighbor

gene id symbol gene type direction distance location
XLOC_032226 ddi2 coding upstream 339 40554551 ~ 40563509 (+)
XLOC_032225 NA coding upstream 11856 40545858 ~ 40551992 (+)
XLOC_032224 prkcda coding upstream 19641 40523370 ~ 40544207 (+)
XLOC_032223 fgd5b coding upstream 64049 40482330 ~ 40499799 (+)
XLOC_032222 CU463231.2 coding upstream 82071 40475711 ~ 40481777 (+)
XLOC_032228 uqcc2 coding downstream 815 40573365 ~ 40577109 (+)
XLOC_032229 frs3 coding downstream 15001 40587551 ~ 40606273 (+)
XLOC_032230 slc6a11a coding downstream 56516 40629066 ~ 40646203 (+)
XLOC_032231 NA coding downstream 80355 40652905 ~ 40656046 (+)
XLOC_032232 eno1b coding downstream 89153 40661703 ~ 40669406 (+)
XLOC_032220 BX936393.2 non-coding upstream 112008 40448634 ~ 40451840 (+)
XLOC_032217 CU467879.1 non-coding upstream 514403 40043615 ~ 40049445 (+)
XLOC_032216 NA non-coding upstream 546711 40004595 ~ 40017137 (+)
XLOC_032242 NA non-coding downstream 412047 40984597 ~ 40986135 (+)
XLOC_032245 NA non-coding downstream 507960 41080510 ~ 41082985 (+)
XLOC_032251 AL732567.2 non-coding downstream 622137 41194687 ~ 41194801 (+)
XLOC_032256 dre-let-7j non-coding downstream 882241 41454791 ~ 41454873 (+)

Expression


Co-expression Network