XLOC_003223 (si:ch73-238c9.1)


Basic Information

Item Value
gene id XLOC_003223
gene name si:ch73-238c9.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 7276824 ~ 7280259 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006355
GACTATTTCTTCGTTataaattttgaaaaacatctcacAAACATACAGAATAAAATGGACTAATGTTTAATAGGTCTGCACAatatacaatgcatccggaaagtattcatttGTCTAAGATAAACCCACAAATATAAACGCTGTTTTACTCCGAGTCGTAAGATGGCGACAGTCCTCCCTGTCAtctctgaatcttcttctgacgTGTCAGCTTGGTAAACAGTCGAGTCTACATGTAAAATATGTACAGTACTTTAGTAGcagatttgttttacagtgtagGATGAATTTTGGTTCTAAAGGCAAAAAGCGGATGGTTCTGCCGACCCGACCTGATCCGCCGACAGTGGAGCAGATAATGGAGGATGTGAACCGTGCCTATCCCAATGATCCAGTGTTCACTGTTTTACACACTTCTGCTGAAGATTTGAAGGGCATTTCCAGCAACGGTGAAGTGGAGGAGAGGTTCCAGCAGAGCAGGCGCTACATAGAGCTTCATGAGCGATTGCAGGAGGAACGCGGCAATCTTGCACGGCGGAGAGACGAGTTGCGCGCGGCTGGAAAATCTTTGGAGAACAGTGTGATAGAGGTGAAAAGTAGCGCAATGTGA
>TCONS_00006356
AAGATGGCGACAGTCCTCCCTGTCAtctctgaatcttcttctgacgTGTCAGCTTGACAGGATGAATTTTGGTTCTAAAGGCAAAAAGCGGATGGTTCTGCCGACCCGACCTGATCCGCCGACAGTGGAGCAGATAATGGAGGATGTGAACCGTGCCTATCCCAATGATCCAGTGTTCACTGTTTTACACACTTCTGCTGAAGATTTGAAGGGCATTTCCAGCAACGGTGAAGTGGAGGAGAGGTTCCAGCAGAGCAGGCGCTACATAGAGCTTCATGAGCGATTGCAGGAGGAACGCGGCAATCTTGCACGGCGGAGAGACGAGTTGCGCGCGGCTGGAAAATCTTTGGAGAACAGTGTGATAGAGGTGAAAAGTAGCGCAATGTGACTTCCGAACATTCACAGCGCCATTTCATGAACTGGAGATTGACTTTAGTCGAGGATTGGGCATGGCACTTGTGAATGCATCAAAATAAAGCTTCAGATCCATAGAA
>TCONS_00006357
gacgTGTCAGCTTGGTAAACAGTCGAGTCTACATGTAAAATATGTACAGTACTTTAGTAGcagatttgttttacagtACAGGATGAATTTTGGTTCTAAAGGCAAAAAGCGGATGGTTCTGCCGACCCGACCTGATCCGCCGACAGTGGAGCAGATAATGGAGGATGTGAACCGTGCCTATCCCAATGATCCAGTGTTCACTGTTTTACACACTTCTGCTGAAGATTTGAAGGGCATTTCCAGCAACGGTGAAGTGGAGGAGAGGTT
>TCONS_00006358
CAGCTTGGTAAACAGTCGAGTCTACATGTAAAATATGTACAGTACTTTAGTAGcagatttgttttacagtgtaggttcgTCATACCACCATGAACACTGATGATTTTTAAAGAgcataatcattttgtttaaaattaagcTGGTGCTTCTCCAGACAGGATGAATTTTGGTTCTAAAGGCAAAAAGCGGATGGTTCTGCCGACCCGACCTGATCCGCCGACAGTGGAGCAGATAATGGAGGATGTGAACCGTGCCTATCCCAATGATCCAGTGTTCACTGTTTTACACACTTCTGCTGAAGATTTGAAGGGCATTTCCAGCAACGGTGAAGTGGAGGAGAGGTTCCAGCAGAGCAGGCGCTACATAGAGCTTCATGAGCGATTGCAGGAGGAACGCGGCAATCTTGCACGGCGGAGAGACGAGTTGCGCGCGGCTGGAAAATCTTTGGAGAACAGTGTGATAGAGGTGAAAAGTAGCGCAATGTGACTTCCGAACATTCACAGCGCCATTTCATGAACTGGAGATTGACTTTAGTCGAGGATTGGGCATGGCACTTGTGAATGCATCAAAATAAAGCTTCAGATCCATAGAAGAATGCTGAGTGTTCTTCCTATTGGACATTGCATTTGTATACTAAAGTAGGAAGGTTTTAATCCAGATTTAATCGTCGCCAACTGTTTTAGTGTGTTGCATAGAAATGAAAGGCACAGGATTATAAAAACATGATTTTGGAATGCTGGTCTTTGTTAAGAAATCACTAGCATTTGGCTTTagcctcatcatcatcatttttttgctatttgctcatcatcatcatttttttgcTACTTTGTATGTGATGAATCTGTTTGgtgtattttgtgtgttcaaAATACAGTAAGTACAAAGATATTCAGGTTGTATTGTAAAAAAGTACCTGTCTGAATATACTGATTAGTCATTTGTTATTCACATCAtcattttaaatcatgtttaaaagcTTGTCCGTGCAGAAatcctttattttaaaataagtgtaAATGTGTAAAAGCCCAGTGCAccaggaaagtattcatagcgcttcactttttccacattttttattttacagccttattccaaaatggattaaagtcaataacccataatgacaatgtgaaaaaaagagcttttgcaaatttattaacaataaaaaacctgaaaaatca
>TCONS_00006359
ACAGTACTTTAGTAGcagatttgttttacagtgtagACAGGATGAATTTTGGTTCTAAAGGCAAAAAGCGGATGGTTCTGCCGACCCGACCTGATCCGCCGACAGTGGAGCAGATAATGGAGGATGTGAACCGTGCCTATCCCAATGATCCAGTGTTCACTGTTTTACACACTTCTGCTGAAGATTTGAAGGGCATTTCCAGCAACGGTGAAGTGGAGGAGAGGTTCCAGCAGAGCAGGCGCTACATAGAGCTTCATGAGCGATTGCAGGAGGAACGCGGCAATCTTGCACGGCGGAGAGACGAGTTGCGCGCGGCTGGAAAATCTTTGGAGAACAGTGTGATAGAG

Function

symbol description
si:ch73-238c9.1 Orthologous to human C19orf25 (chromosome 19 open reading frame 25).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-81 Orthologous to human C19orf25 (chromosome 19 open reading frame 25).

Ensembl:

ensembl_id ENSDARG00000103619

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006355 False 610 mRNA 0.44 3 7276824 7279558
TCONS_00006356 False 494 mRNA 0.49 3 7276983 7279664
TCONS_00006357 False 267 mRNA 0.45 3 7277025 7279416
TCONS_00006358 False 1187 mRNA 0.38 2 7277032 7280259
TCONS_00006359 True 347 mRNA 0.50 3 7277070 7279537

Neighbor

gene id symbol gene type direction distance location
XLOC_003222 reep6 coding upstream 2446 7261981 ~ 7274378 (+)
XLOC_003221 nwd1 coding upstream 29837 7214353 ~ 7246987 (+)
XLOC_003220 thop1 coding upstream 64727 7183025 ~ 7212097 (+)
XLOC_003219 tmem38a coding upstream 97308 7158723 ~ 7179516 (+)
XLOC_003217 NA coding upstream 124817 7149071 ~ 7152007 (+)
XLOC_003224 NA coding downstream 980 7281239 ~ 7286310 (+)
XLOC_003225 diras1a coding downstream 44445 7324704 ~ 7341807 (+)
XLOC_003226 adgrl2a coding downstream 152274 7432533 ~ 7737642 (+)
XLOC_003227 CR450813.2 coding downstream 502255 7782514 ~ 7783314 (+)
XLOC_003228 NA coding downstream 545094 7825353 ~ 7826072 (+)
XLOC_003250 BX324177.11 misc downstream 4065544 11345803 ~ 11346099 (+)
XLOC_003255 BX324177.14 misc downstream 4092627 11372886 ~ 11373182 (+)
XLOC_003257 BX324177.13 misc downstream 4106103 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 4137774 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 4149134 11429393 ~ 11429689 (+)
XLOC_003218 CU929070.2 non-coding upstream 125918 7150820 ~ 7150906 (+)
XLOC_003216 CR925817.1 non-coding upstream 173288 7095176 ~ 7103536 (+)
XLOC_003215 FQ976909.1 non-coding upstream 320445 6946591 ~ 6956379 (+)
XLOC_003212 BX936438.2 non-coding upstream 414456 6862252 ~ 6862368 (+)
XLOC_003229 NA non-coding downstream 599883 7880142 ~ 7971030 (+)
XLOC_003234 CR847563.1 non-coding downstream 1297795 8578054 ~ 8580557 (+)

Expression


Co-expression Network