XLOC_032230 (slc6a11a)


Basic Information

Item Value
gene id XLOC_032230
gene name slc6a11a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 40629066 ~ 40646203 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062956
GATTCGCTTCTTTAAATTGCTCACACACCTACAAAACGGCTGAAAGACACAGACTCCTGCAAGCGTACACATTGTGAGCATGGCAGGCTCCTCCACCAGGCGGACAGGGAACCAGCAGGCTGATATAACTCCTGAAGAGCGAGGCCAATGGGCAAACAAGATTGAGTTTCTGCTGACTGTAGCCGGAGCTATTATTGGGCTTGGAAATGTTTGGAGGTTTCCATATCTTTGCTATAAAAATGGAGGAGGGGCTTTTTTCATTCCATATGTCTTGTACCTGGTTACCTGTGGTATCCCGCTTTTTGTGCTTGAGACATCTTTGGGTCAGTACACCAGTCAGGGAGGCATCATGTGCTGGAGAAAGGTCTGTCCACTTTTTGAAGGAATGGGTTATGCCAGTCAGCTGATTATTGTGTATGGCTCCATCACCTACATCATCATCATAGCGTGGGCCTTCTTGTATCTTTTCTCATCCTTTAATGTTGAGCTGCCCTGGGCCAGCTGCAACAATCCGTGGAACACAGATACTTGTATTGTGCTTAGTGGGAGGAATTCTAGTTCAGAGTTGGCATCTCCTCTTAATTCCTCTTCCTCCGTCATGGAGTTCTGGCATCACAGAGTGTTGCGACTGTCCAGTGGAGTTGAGCATTTGGGCACAGTAAGGTGGGATTTGGCTCTTATTCTCCTTCTTGTCTGGATCCTGGTCTACTTCTGCATCTGGAAAGGCGTGAAATCAACTGGCAAGGCAGTCTATTTCACAGCAACATTCCCTTATGTTATGCTCTTGATACTGCTGTTACGGGGGGTCACTTTACCTGGTGCCCTCAACGGCATCTATTATTACATGTATCCAGATCTGACACGACTAGCAGACCCACAGgtATGGATGGATGCTGGTACGCAGATCTTCTACTCGTATGCCATTTGTCTGGGTTACCTCAGCTCTCTTGGAAGCTACaatcaatataataataactgCTACAGAGACTCCTTCTACCTGTGCTTGCTGAACAGTGGAACCAGTTTTTTGGGTGGGTTTGCCATTTTCTCTGTTCTGGGTCACATGGCACAGGAGCAAGGGGTGGATATTTCCCTTGTGGCTGAATCAGGTCCAGGACTGGTGTTTATAGTTTATCCTCAGGCAGTGACCATGCTGCCGTTGTCTCAGTTCTGGGCTGTGTGTTTCTTCATCATGATCATCCTCTTGGGTTTGGACAGCCAGTTTGTAGGACTGGAGAGTATAATGACATCAGTGACAGACATATTTCCCACTGTACTGAGACGCGGCTTCAGAAGAGAGATGCTGCTTTTAGGGATTTGCCTGGTCTGCTATTTCATGGGTCTTCTTATGATCACAGAGGGCGGTCTGTACATTATTCAGTTATTTGATCATTACGTGTGCAGTGGAACCACTCTCCTCTTTCTGGCCACCTGTCAGTCTGTGGCTATTGGCTGGGTGTATGGTGCTGACCGATTCTACGAGAACATACAAGACATGATTGGCTACAAACCCTGGCCTATGGTGAAGTACTGCTGGCTCTATGTCACCCCGTCAGTCTGCGTAGgcacatttattttctctttggtcAAATACAGTCCCCTGAAATTTAACAACAAATATATGTATCCATGGTGGGCATACGGTATCGGCTGGTTCCTGGCGGTGTCCTCTCTCTCCCTCATTCCCATCAACATGATCTACAAACTCCACAAAGGAAAAGGAACCTTCTGGGAGCGTCTCCAGTTGGCCTGCAGTCCAGCAGAGGATCTTCCTCAATCTCAGAGACCCTCAGCACATCATTACACTCTCTCAGCCAGTACAGACAGAGAAAAGAGCCCAGACAACCTttaattccacagatttttttttcccttcattttGATCAAACAAAGCATAGATTACTAGATTAAAAAGGCAAAAGATCCAACTGGATATATATACTGCTCTTCGTGAGACCAAATTTTGACTTAAAAATCAATGATTAATTTTTTCCCCTCATAAGAAACACTGATGCATCCTAAACTATGCAAAGACATACTGTACATAAGCCTCGTGTATTGCCTTAAAGCAGAGCAGTCATGCGTTTTGACAGCTGAGGACTCTCAGGGTGACAGGTTATTAGAGATTTTCTGTAGGTTTTCTGATGCAAGTTAACCTGTTATGAGATAATTTGACCCTTCAGGCACTTTAAATGTGATCCACAGTAAGAGCTGATTGATTTCAGTTTCTTTCAGTGTTTCATTTACCTCAAGGGCATTATGTTAAATGTGTTCAATCAGCACCAAGTTGTTTTGAAAAGTCATGGACAAGCTAGACATATGTGTTTTTTAAGTACTGTTGTACGTTTTGtttagtctatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatcacaaattTTATCATTATAAAATGTTCTGGGATAATATTTAACTGAAACAGTATATGaaatttataagaaaaaaataaaagtatacagCCCTCCTGTTA

Function

symbol description
slc6a11a Predicted to enable gamma-aminobutyric acid:sodium symporter activity. Predicted to be involved in sodium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection. Predicted to be integral component of plasma membrane. Is expressed in ectoderm. Orthologous to several human genes including SLC6A13 (solute carrier family 6 member 13).

GO:

id name namespace
GO:0006810 transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0043005 neuron projection cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0042165 neurotransmitter binding molecular_function
GO:0015293 symporter activity molecular_function
GO:0005328 neurotransmitter molecular_function
GO:0005332 gamma-aminobutyric acid molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3729 Predicted to enable gamma-aminobutyric acid:sodium symporter activity. Predicted to be involved in sodium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection. Predicted to be integral component of plasma membrane. Is expressed in ectoderm. Orthologous to several human genes including SLC6A13 (solute carrier family 6 member 13).

Ensembl:

ensembl_id ENSDARG00000074002

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062956 True 2533 mRNA 0.42 14 40629066 40646203

Neighbor

gene id symbol gene type direction distance location
XLOC_032229 frs3 coding upstream 22793 40587551 ~ 40606273 (+)
XLOC_032228 uqcc2 coding upstream 51957 40573365 ~ 40577109 (+)
XLOC_032227 si:ch73-15b2.5 coding upstream 56516 40563848 ~ 40572550 (+)
XLOC_032226 ddi2 coding upstream 65557 40554551 ~ 40563509 (+)
XLOC_032225 NA coding upstream 77074 40545858 ~ 40551992 (+)
XLOC_032231 NA coding downstream 6702 40652905 ~ 40656046 (+)
XLOC_032232 eno1b coding downstream 15500 40661703 ~ 40669406 (+)
XLOC_032233 rereb coding downstream 25133 40671336 ~ 40689042 (+)
XLOC_032234 ccdc36 coding downstream 68608 40714811 ~ 40717048 (+)
XLOC_032235 slc26a6l coding downstream 77351 40723554 ~ 40732692 (+)
XLOC_032222 CU463231.2 non-coding upstream 147289 40475711 ~ 40481777 (+)
XLOC_032220 BX936393.2 non-coding upstream 177226 40448634 ~ 40451840 (+)
XLOC_032217 CU467879.1 non-coding upstream 579621 40043615 ~ 40049445 (+)
XLOC_032216 NA non-coding upstream 611929 40004595 ~ 40017137 (+)
XLOC_032242 NA non-coding downstream 338394 40984597 ~ 40986135 (+)
XLOC_032245 NA non-coding downstream 434307 41080510 ~ 41082985 (+)
XLOC_032251 AL732567.2 non-coding downstream 548484 41194687 ~ 41194801 (+)
XLOC_032256 dre-let-7j non-coding downstream 808588 41454791 ~ 41454873 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_09730645_09739635 SLC6A11A coding CI01000340 null 9730524 ~ 9739635 (+)