G1327167


Basic Information

Item Value
gene id G1327167
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 76469915 ~ 76472125 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1515850
tgccagggtcgtgtttcggaggacgcatggctctcgaccttcacctctccctgtacgggagttgcagcgatggggcAAGATTGTAACTACTAATTGGATATCACAATTATTTTTAAACTCTATCTCTGGTTCCTGTAACAGCACAGTGTTAGCATACCTATTTCACTCATACTGTATGCAGGCAAGTCAGACTCAGGACCACAGAGTCAGTTCTTCCTCCTTTACTAGTGCAGCTGTAAGGAAGCACATTGCATATATCACCTCCTcgtacagtaaaaaaaaacatctcttcTGCATCTATTTATGAAAATAGATCTATGTCCAAATGAAGGATAAGGTGCTTCAGGGAAATGGGCGATCCTGTATTCTAGGATTCAGAGAAGTCGCCATTTTGTTTTTGGGGAATTGCAGattgtgttttgttgttttgtttctttcTAATTGCGCGTAGCCTAGATAAAGCTGCTTCTTCATTCTCCTCCCCAAAGCAAAGCTTTTTAAATCCTTTTCATATATTATGCTTCTAGGTCAACCAGTGTGCTTGGTGACATGCATGGAGCGGAGACGTCACTTCTAGTCTCGTCTGCCAAACGCATTGTGATGAAGCCTAAGGGGACGACTGACTGTCCCGGTTCCATttcaacatcctcctcctcagtcTTGTCTACGAGAGGCAGGACTACAGTACAGGCTTCAGAAAATAAATGGGGCTAACGTTTAAAATATTGTGCTATTTTccagatgttttttttcttttctttcttcccCCAAGTCAAATAGTCTACTTAAAAATCATTGGGAAGAAGTGAGACGCAGTACTGATATTTTCTCTGTAAAAACCATTAGAAATCACaggggggagggacagagagctAGTGAGACCCGGGTATGACAgatgaaggaggacaAGGAGGACAGAGAGCTAGTGAGACCCGGCTATGACAGATGAAGGAGGACAAGGAGGACAGAGAGCTAGTGAGACCCGGGTATGACAGATGAAGGAGGACAAGGAGGACAGAGAGCTATAGTGAGACCCGGGTATGACAGATGAAGGAGGACAGAGCGAAGCCAAGTGTGAacgagagagaccaagagagagagagggaaggagggaaggactCCCTAGAATAACTAGATAGAGGGTTTGTATCACTCTGGCCTTGTTTCCGTCACGCTGCTACACAACAATGGTgcagcaacacaaacacacacgtacagagTGGCCAGTCCAGCATCACATGTAAACGTTTCAGCAAATGTTagtgtgtttttctttttttgtttgttttaaacaACAGAACTGTGTTACTGTTTTATTGTCCAGCTGCAGTAATAAAAAGGAGAGGATCGGTCGGATGGCACTATTGTTTCAGTTCATCGCTGTTGTTATTTTTGTCTCGGGTATTTTCCAAGAGGTCAGTGTGGTCGACGTTGCCCTCCATCTTTGTAGTTCGCCTCCATCTTTGTAGTTCTTTGTAGTCCTTGGGTAGTGGTGCGTACCGTACTCAATAGTCCCCagtgtgagggaggaagaggaggaaaccTCTTGTGATTGTGGCTCATGCTCTGGCTCAGAGGAAggagtttagttttgtcagtgtGCTTTGACTTAGCGGCCCAGGACCCCACCATCCACCTAGGaacactgtctgtctatctgtgtccttaatagcaccctattccctaggtagtgcactacttttagccagAGCTGAGAGGGGTTAGCCTGCAAAAGAGGTTCTGGAcagaagtagtgccctacatgTGCAATAAGGCTCCATTTTAGATTGACCCCCTGTCTCATCAGAGTGGTTTTCTAAAGTAGCACCAGGGGGAGGACAACTcacaggggaaggggagagagagagagccttgggCCTTCAGACCTCCAGTCTGCTATAAGGTCTTAGTgggacagatagatagacagaaagagagagccttGGGCCTTCAGACCTCCAGTCTGCTATAAGGTCTTAGTGGGGTCTCTATCATCTAGCCCAGCCCCGGCCAGCGCCGCCCCGATCCCAGTCACCCCGATTCCAGCAGCCATCCTGGACAAGGAATGGTGGTTCTGGTTCGGTGGAGGGCCAGAGAGGCTGTCCCCCGGCTCGGTCCAGTTGATAACAGGCTCCTCGGCGGGTAGCTGGTTCAGTTCTGACTGGGACCC
>TU1515851
tgccagggtcgtgtttcggaggacgcatggctctcgaccttcacctctccctgtacgggagttgcagcgatggggcAAGATTGTAACTACTAATTGGATATCACAATTATTTTTAAACTCTATCTCTGGTTCCTGTAACAGCACAGTGTTAGCATACCTATTTCACTCATACTGTATGCAGGCAAGTCAGACTCAGGACCACAGAGTCAGTTCTTCCTCCTTTACTAGTGCAGCTGTAAGGAAGCACATTGCATATATCACCTCCTcgtacagtaaaaaaaaacatctcttcTGCATCTATTTATGAAAATAGATCTATGTCCAAATGAAGGATAAGGTGCTTCAGGGAAATGGGCGATCCTGTATTCTAGGATTCAGAGAAGTCGCCATTTTGTTTTTGGGGAATTGCAGattgtgttttgttgttttgtttctttcTAATTGCGCGTAGCCTAGATAAAGCTGCTTCTTCATTCTCCTCCCCAAAGCAAAGCTTTTTAAATCCTTTTCATATATTATGCTTCTAGGTCAACCAGTGTGCTTGGTGACATGCATGGAGCGGAGACGTCACTTCTAGTCTCGTCTGCCAAACGCATTGTGATGAAGCCTAAGGGGACGACTGACTGTCCCGGTTCCATttcaacatcctcctcctcagtcTTGTCTACGAGAGGCAGGACTACAGTACAGGCTTCAGAAAATAAATGGGGCTAACGTTTAAAATATTGTGCTATTTTccagatgttttttttcttttctttcttcccCCAAGTCAAATAGTCTACTTAAAAATCATTGGGAAGAAGTGAGACGCAGTACTGATATTTTCTCTGTAAAAACCATTAGAAATCACaggggggagggacagagagctAGTGAGACCCGGGTATGACAgatgaaggaggacaAGGAGGACAGAGAGCTATAGTGAGACCCGGGTATGACAGATGAAGGAGGACAGAGCGAAGCCAAGTGTGAacgagagagaccaagagagagagagggaaggagggaaggactCCCTAGAATAACTAGATAGAGGGTTTGTATCACTCTGGCCTTGTTTCCGTCACGCTGCTACACAACAATGGTgcagcaacacaaacacacacgtacagagTGGCCAGTCCAGCATCACATGTAAACGTTTCAGCAAATGTTagtgtgtttttctttttttgtttgttttaaacaACAGAACTGTGTTACTGTTTTATTGTCCAGCTGCAGTAATAAAAAGGAGAGGATCGGTCGGATGGCACTATTGTTTCAGTTCATCGCTGTTGTTATTTTTGTCTCGGGTATTTTCCAAGAGGTCAGTGTGGTCGACGTTGCCCTCCATCTTTGTAGTTCGCCTCCATCTTTGTAGTTCTTTGTAGTCCTTGGGTAGTGGTGCGTACCGTACTCAATAGTCCCCagtgtgagggaggaagaggaggaaaccTCTTGTGATTGTGGCTCATGCTCTGGCTCAGAGGAAggagtttagttttgtcagtgtGCTTTGACTTAGCGGCCCAGGACCCCACCATCCACCTAGGaacactgtctgtctatctgtgtccttaatagcaccctattccctaggtagtgcactacttttagccagAGCTGAGAGGGGTTAGCCTGCAAAAGAGGTTCTGGAcagaagtagtgccctacatgTGCAATAAGGCTCCATTTTAGATTGACCCCCTGTCTCATCAGAGTGGTTTTCTAAAGTAGCACCAGGGGGAGGACAACTcacaggggaaggggagagagagagagccttgggCCTTCAGACCTCCAGTCTGCTATAAGGTCTTAGTgggacagatagatagacagaaagagagagccttGGGCCTTCAGACCTCCAGTCTGCTATAAGGTCTTAGTGGGGTCTCTATCATCTAGCCCAGCCCCGGCCAGCGCCGCCCCGATCCCAGTCACCCCGATTCCAGCAGCCATCCTGGACAAGGAATGGTGGTTCTGGTTCGGTGGAGGGCCAGAGAGGCTGTCCCCCGGCTCGGTCCAGTTGATAACAGGCTCCTCGGCGGGTAGCTGGTTCAGTTCTGACTGGGACCC

Function

NR:

description
glutamate receptor-interacting protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1515850 False 2170 lncRNA 0.48 2 76469915 76472125
TU1515851 True 2070 lncRNA 0.47 2 76469915 76472125

Neighbor

gene id symbol gene type direction distance location
LOC110490682 cand1 coding downstream 821754 75564608 ~ 75648161 (-)
LOC110518764 LOC106576636 coding downstream 922876 75520301 ~ 75547039 (-)
LOC118938932 NA coding downstream 1277981 75190621 ~ 75191934 (-)
LOC110490689 rap1b coding downstream 1481584 74883029 ~ 74988331 (-)
LOC110514333 nu107 coding downstream 1593596 74806009 ~ 74876319 (-)
LOC110513781 LOC106599032 coding upstream 5424 76477549 ~ 76499886 (-)
LOC118936278 irak3 coding upstream 27994 76500119 ~ 76525322 (-)
LOC110514961 LOC106590998 coding upstream 202996 76675121 ~ 76681446 (-)
LOC110512778 trhde coding upstream 399342 76871462 ~ 77277803 (-)
LOC118938902 NA coding upstream 879153 77351278 ~ 77352450 (-)
G1327107 NA non-coding downstream 175150 76294202 ~ 76294765 (-)
G1327091 NA non-coding downstream 213887 76255623 ~ 76256028 (-)
G1327085 NA non-coding downstream 236265 76233448 ~ 76233650 (-)
G1327081 NA non-coding downstream 254258 76215420 ~ 76215657 (-)
G1327079 NA non-coding downstream 257783 76211919 ~ 76212132 (-)
G1327165 NA non-coding upstream 2097 76474222 ~ 76474551 (-)
G1327175 NA non-coding upstream 19442 76491567 ~ 76492247 (-)
G1327196 NA non-coding upstream 81672 76553797 ~ 76554211 (-)
G1327209 NA non-coding upstream 91367 76563492 ~ 76563843 (-)
G1326996 NA other downstream 470915 75998506 ~ 75999000 (-)
G1326164 NA other downstream 1416558 75052749 ~ 75053357 (-)
G1326095 NA other downstream 1695962 74772299 ~ 74773953 (-)
G1326070 NA other downstream 1746515 74722589 ~ 74723400 (-)
LOC118938855 LOC106576675 other downstream 1862599 74602942 ~ 74607316 (-)
LOC110515635 LOC106576658 other upstream 946196 77418263 ~ 77506802 (-)
G1328123 NA other upstream 1399154 77871279 ~ 77874604 (-)
LOC118938867 LOC106576670 other upstream 1826451 78298576 ~ 78452504 (-)
G1328815 NA other upstream 2290974 78763099 ~ 78766048 (-)
G1328861 NA other upstream 2398200 78870325 ~ 78871031 (-)

Expression


Co-expression Network