XLOC_032233 (rereb)


Basic Information

Item Value
gene id XLOC_032233
gene name rereb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 40671336 ~ 40689042 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062959
CCTCCATTTTGAGTAGTATGAAATAGAGGAAAGCATAGTTTGGAGCCGCCGCCGCAAACAAACTGTAAACACTAGCGAAACAGCCTCTGCCATGGACGACTTGTTCAGTCCGCGAAGGCAGCTGAATAGCACACAAGGAGAGATTCGAGTTGGACCAAGTCATCAGGCCAAGCTCCCAGAATTACAGCCGCCTCCTGCTCACGGTACAGAGTCGGTCACAGAAAATGAGGATCTGGTTTGGGCACCTGGGGTCAATGACTGTGACCTTCTCATGTATCTGCGGGCTGCCAGGAGCATGGCAGCTTTTGCAGGGATGTGTGATGGAGGTTCAACAGAAGATGGTTGTCTTGCAGCTTCACGGGATGATAccactttaaatgctttaaatacgCTTCATGAAAGCCAATATGATGCAGCCAAAGCACTTCAGTGCCTGGTGAAGAAACCTGTTCCAAAGCTTATTGAGAAATCCTGGTCTGAAGATGAAGTGAAACGGTTTATCAAAGGACTCAGACAGTACGGCAAAAACTTCTTCAAGATTCGTAAGGATCTACTGCCTAGTAAGAAAACGGGTGAGCTGATCACATTTTACTACTACTGGAAGAAAACTCCAGAAGCTGTGGCGGCGCGACCTCACCGTCAGCAAAGAAGACAGCCAGTGTCTCGCAAAGTGAAAACTCGCAATGCAACAGCTGCAGCCAATGCAACATCTCGCACTTCTTCTATGGAGCTCAGTTCGGCCAGTGAAGATGATCTGGACAGTGAGGATAGTGAGCAGGGTGGCAAACGTCAAGCTTGCAGTCACTGTCTATCCACTAACTCCAAAGACTGGCATCATGGTGGAAGAGATAATGTCTTGCTGTGCTCTAGCTGCCACACTCACTTCAGCAAACATCGGCGTCTGCCACCCGTTCCCAAACCAGCAGACCCACCGTATCTCTTCAAACCCGTCaaagaagaggaagaggaaagCAGGCATGGCATGAAGACCCGCCGCAGCCGCGTGCCCCCACATATGTCATCTCTTCGAAGCGGACGCAACAGGCCAACCGGGAGTCCCGAGAGGGGCCTCTCTCCGCCATCTGAGGATGTGCGGCCTAATGGTCAGTCCTCTAGAGCCAGTTCCACTACAATGACAACCAGGGCGTCCAGCTCAGATATGAAGAATGGAGTTGCTGGCAAGACCAACAAGAAGATGAAAGTAGAGGCGTCTGTTGTAAAGGGTGTGAAAAGACAGAGAGAGTCAGCTGCTCCAGATGCTGACGAACCGGAGAGGAAAAACATGAAACGACCAAAGAATCAGGAGGGTCCTGATTCTCCATCAGAATGTGAGGGTGAAGGCGAAAGCTCTGACAGCCGCAGTGCCAACGAGGATGGCAGCAGTGACACTAAAGACATTGATCAGGACAACCGCAGCTCCTCCCCGAGCCTAGCTAGTCCTCTGCAAGCCAATGAAAGTGATTCAGACTCCCCAGCACCACCGCCTGCATCAGGCCCAATTACACAAGCCCAGCCCCAGCAGCCTGCTGCAGCCTCCACAACACACACCCCATCTGAATCTCCTCCATCTCCTCAGCCCACTCTGCCTACATTTTCATCAGCACCTTCGCCCGGAGCGGCTACAACTACTGTTACATCGAAGGCACCATCTGCGGAGACGACCCTGGATGTTCCCTCTCCATCCCCTTTCAGAAGTGGCCCCAAGGCACCCGAGGCTCCCACCTCTTACTCAAACTCCTCATCTCAACAGGTGCAATGTCCAGGACAGGGGCAGTCATTGCCTGTGCCAGCCCATTATCAGCACAATTCAGGTCAGCTACAAAATCCTTCATCTGGAGCCAATCAGCCACAAGGATTCACTTCCAGACCACTGCACCTTCAAAGAGAGAGTCCTTTTCCTCCTCTTCCTGCTACAGCAACATCCCAAATCAAGCCCCCTCCGACCACTCCAATTCCACCTTCTCACAAGCAGCCACCTCACCTTTCTGCACCTCCACCCCATTTCCTACAGATCCACCCTAATTTACCTCCACCTCCAGCTCTGAAGCCACTCGCTTCCTTGCCCTCACAGCATTTGCCTTCCTCCCAGCCTCCTCCACTGCATGTAATTCCACAAAATAACCCCGCTCCGCCTTCAGTCCTAACTCAGACACAGAGCCAGCAAGTTAAAAGCCACAGCAGTGCTGCACCTCAGGTCGCAGCTAGTTCTCACCCACCGCTGCCCCCGAATCGCCCTTCTCCTGAGTCTACTGCTTCATACCCTCTTTACACTTCTCCCATCCCTGTCCCAGCCCATCAGCCCTCCACATCCTCCTCAGCAAGCACTCCTGTTGGTCAGGCTATAATCAAAGAGGAGCCAGTTGATGAGGAAGAGGAATGTGATAGTCCGCCTCCTCCTCGCAGGAGTCCCTCTCCAGCACCAACAGTTGTGGACATTCCCAGCCATGCAAGTCAGTCAGCAAGATTCATCAAACACCTCAACCGAGGCTACAACTCCTGCTCTCGCACAGACCTGTACTTCACCCCCTTGACCTCCTCAAAACTGGCTAAAAAGCGAGAGGAAGCTGCCGAACGGTCCAGAAGAGAAGCAGAGCTGAGTGCTCGACAAggaagggagagagaaagagaaagagagcgagagcgggagagagaaagagagcgggagcgagagcgagagagagactcTGATAAAGCCTCTCGTGCTTCAAGCTCATCCCACGATGGCCGCATAAGTGAGCACCTTCTTGCGGCCCACGTGCAGCCAGGTCGTCCATCATTTGAACCTCCCCCACCCACCACCGTTGCTGCTGTTCCTCCTTATCTTGGCCCTGACACTCCAGCTCTGCGCACACTCAGCGAGTACGCCCGGCCACATGTCATGTCACCCACCAACCGCAACCATCCCTTCTTCATGCCATTGGGCCCAGGTGAGCACCTGCTAGCTTATCACATGCCTGGGCTCTACGCAGCAGACCCAGCGCTCAGAGAGCGGGAACTTCGTGAGCTTCGAGAGCGAGAAATCAGGGAAAGAATGAAGCCCGGATTTGAGGTGAAGCCGCCAGAGCTGGAGAACCCACTTCATCCATCAGCAAATCCTATGGAGCACTTTGCCCGCCATGGTGCCCTGCCACTGGCTCATGTGGCTGGACCTCACCATTTTGCCCAGTTCCACCCAGCCATGGAGCGCAATGTAGCAGCTCCACCTCGACCAGAAATCAGCTATGCTGAGCGTTTAACAGCTGAAAGGCTCCATGCTGAAAGGATGGCCTCTGTTGCTGCTGGTGACCCTGTTGCACGGCTTCAGATGCTCAATGTCACACCGCACCACCACcaacactcacacatacactcccATCTTCATCTGCACCAACAGGACCCTCTCAACCAAGGCCAAGGGCCTCATCCCCTAGTGGACCCATTGGCTGCTGGCCCTCCACTGGCACGTTTCCCTTACCCTCCCGGTGCCATCACTAACCCCCTACTCAGTGAGTTACCACACGAGCATGAAATGCTCCGCCACCCTCTGTTTGGAGCACCATTCCCCAGAGAGTTACCAGGCCCACTGGCTCCGATGTCAGCTGCGCATCAGTTGCAGGCGATGCAGGCACAGTCAGCAGAGCTGCAGAGGCTGGCACTGGAGCAGCAGTGGCTACACGGACACGCACACTTACACAGCGCTCCTCTCCCCAGCCAAGAGGACTATTACAGCCGTCTGAAGAAAGAAGGAGACAAGCAGTCCTGAAATGAACAAATTCTCCACTGTGGATTATAGAGTGAATTCTGTGTTCAGGGTATCAAGCCTTTTGTTTCCCGAAAAACCCAGCGTGGGTTTATCCCCATTTTGGCACTTATGAACGTTTGACCGACTCCTTTGTGCTGTACGAAATAAGTAGCCTTTTGGAGCTCACTGAATTCGCTTTCCTTGCATGAACACTATTTAGAAACGGTTTCTGTCAGAAATGATATTCCCATGTAAtgtggttattgtgctgaaagcACAGTACAGTAGATTTACTAAGTATTTGAGAAGTGCTGTCCATTATCCAGAGTTTATCACAGTTTAGTTTCAAAGTTTATTGAAACACTCGTTTTAAGATTGTAAATActatatgtttaaaataatatattaactgTTAAAAGTTGCAATGATAGATTTGGATACAAAAATTTCAGATGACTTGTGTGCAAAAAGTGCATGCTTTACATACGCTATCCTTCCCTTTCTCTGACAGCCTCTTCATCTATGCCTCAGAGTGCTCATCAGTATAAAATCCACTTTATTTTTGTCTGTAATTTCAATTTTTTAACCGTTTGAAACGTAGACCAAATGCAGCTAGAGTGTTA
>TCONS_00062960
ATGGACGACTTGTTCAGTCCGCGAAGGCAGCTGAATAGCACACAAGGAGAGATTCGAGTTGGACCAAGTCATCAGGCCAAGCTCCCAGAATTACAGCCGCCTCCTGCTCACGGTACAGAGTCGGTCACAGAAAATGAGGATCTGGTTTGGGCACCTGGGGTCAATGACTGTGACCTTCTCATGTATCTGCGGGCTGCCAGGAGCATGGCAGCTTTTGCAGGGATGTGTGATGGAGGTTCAACAGAAGATGGTTGTCTTGCAGCTTCACGGGATGATAccactttaaatgctttaaatacgCTTCATGAAAGCCAATATGATGCAGCCAAAGCACTTCAGTGCCTGGTGAAGAAACCTGTTCCAAAGCTTATTGAGAAATCCTGGTCTGAAGATGAAGTGAAACGGTTTATCAAAGGACTCAGACAGTACGGCAAAAACTTCTTCAAGATTCGTAAGGATCTACTGCCTAGTAAGAAAACGGGTGAGCTGATCACATTTTACTACTACTGGAAGAAAACTCCAGAAGCTGTGGCGGCGCGACCTCACCGTCAGCAAAGAAGACAGCCAGTGTCTCGCAAAGTGAAAACTCGCAATGCAACAGCTGCAGCCAATGCAACATCTCGCACTTCTTCTATGGAGCTCAGTTCGGCCAGTGAAGATGATCTGGACAGTGAGGATAGTGAGCAGGGTGGCAAACGTCAAGCTTGCAGTCACTGTCTATCCACTAACTCCAAAGACTGGCATCATGGTGGAAGAGATAATGTCTTGCTGTGCTCTAGCTGCCACACTCACTTCAGCAAACATCGGCGTCTGCCACCCGTTCCCAAACCAGCAGACCCACCGTATCTCTTCAAACCCGTCaaagaagaggaagaggaaagCAGGCATGGCATGAAGACCCGCCGCAGCCGCGTGCCCCCACATATGTCATCTCTTCGAAGCGGACGCAACAGGCCAACCGGGAGTCCCGAGAGGGGCCTCTCTCCGCCATCTGAGGATGTGCGGCCTAATGGTCAGTCCTCTAGAGCCAGTTCCACTACAATGACAACCAGGGCGTCCAGCTCAGATATGAAGAATGGAGTTGCTGGCAAGACCAACAAGAAGATGAAAGTAGAGGCGTCTGTTGTAAAGGGTGTGAAAAGACAGAGAGAGTCAGCTGCTCCAGATGCTGACGAACCGGAGAGGAAAAACATGAAACGACCAAAGAATCAGGAGGGTCCTGATTCTCCATCAGAATGTGAGGGTGAAGGCGAAAGCTCTGACAGCCGCAGTGCCAACGAGGATGGCAGCAGTGACACTAAAGACATTGATCAGGACAACCGCAGCTCCTCCCCGAGCCTAGCTAGTCCTCTGCAAGCCAATGAAAGTGATTCAGACTCCCCAGCACCACCGCCTGCATCAGGCCCAATTACACAAGCCCAGCCCCAGCAGCCTGCTGCAGCCTCCACAACACACACCCCATCTGAATCTCCTCCATCTCCTCAGCCCACTCTGCCTACATTTTCATCAGCACCTTCGCCCGGAGCGGCTACAACTACTGTTACATCGAAGGCACCATCTGCGGAGACGACCCTGGATGTTCCCTCTCCATCCCCTTTCAGAAGTGGCCCCAAGGCACCCGAGGCTCCCACCTCTTACTCAAACTCCTCATCTCAACAGGTGCAATGTCCAGGACAGGGGCAGTCATTGCCTGTGCCAGCCCATTATCAGCACAATTCAGGTCAGCTACAAAATCCTTCATCTGGAGCCAATCAGCCACAAGGATTCACTTCCAGACCACTGCACCTTCAAAGAGAGAGTCCTTTTCCTCCTCTTCCTGCTACAGCAACATCCCAAATCAAGCCCCCTCCGACCACTCCAATTCCACCTTCTCACAAGCAGCCACCTCACCTTTCTGCACCTCCACCCCATTTCCTACAGATCCACCCTAATTTACCTCCACCTCCAGCTCTGAAGCCACTCGCTTCCTTGCCCTCACAGCATTTGCCTTCCTCCCAGCCTCCTCCACTGCATGTAATTCCACAAAATAACCCCGCTCCGCCTTCAGTCCTAACTCAGACACAGAGCCAGCAAGTTAAAAGCCACAGCAGTGCTGCACCTCAGGTCGCAGCTAGTTCTCACCCACCGCTGCCCCCGAATCGCCCTTCTCCTGAGTCTACTGCTTCATACCCTCTTTACACTTCTCCCATCCCTGTCCCAGCCCATCAGCCCTCCACATCCTCCTCAGCAAGCACTCCTGTTGGTCAGGCTATAATCAAAGAGGAGCCAGTTGATGAGGAAGAGGAATGTGATAGTCCGCCTCCTCCTCGCAGGAGTCCCTCTCCAGCACCAACAGTTGTGGACATTCCCAGCCATGCAAGTCAGTCAGCAAGATTCATCAAACACCTCAACCGAGGCTACAACTCCTGCTCTCGCACAGACCTGTACTTCACCCCCTTGACCTCCTCAAAACTGGCTAAAAAGCGAGAGGAAGCTGCCGAACGGTCCAGAAGAGAAGCAGAGCTGAGTGCTCGACAAggaagggagagagaaagagaaagagagcgagagcgggagagagaaagagagcgggagcgagagcgagagagagactcTGATAAAGCCTCTGTAAGTTTACTTTAA

Function

symbol description
rereb Predicted to enable transcription corepressor activity. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human RERE (arginine-glutamic acid dipeptide repeats).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003714 transcription corepressor activity molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0001085 RNA polymerase II transcription factor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070212-3 Predicted to enable transcription corepressor activity. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human RERE (arginine-glutamic acid dipeptide repeats).

Ensembl:

ensembl_id ENSDARG00000075670

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062959 False 4344 mRNA 0.51 17 40671336 40689042
TCONS_00062960 True 2622 mRNA 0.53 13 40671427 40682556

Neighbor

gene id symbol gene type direction distance location
XLOC_032232 eno1b coding upstream 1930 40661703 ~ 40669406 (+)
XLOC_032231 NA coding upstream 15290 40652905 ~ 40656046 (+)
XLOC_032230 slc6a11a coding upstream 25133 40629066 ~ 40646203 (+)
XLOC_032229 frs3 coding upstream 65063 40587551 ~ 40606273 (+)
XLOC_032228 uqcc2 coding upstream 94227 40573365 ~ 40577109 (+)
XLOC_032234 ccdc36 coding downstream 25769 40714811 ~ 40717048 (+)
XLOC_032235 slc26a6l coding downstream 34512 40723554 ~ 40732692 (+)
XLOC_032236 si:ch211-157b11.8 coding downstream 86758 40775800 ~ 40783641 (+)
XLOC_032237 gata2b coding downstream 104973 40794015 ~ 40803800 (+)
XLOC_032238 ruvbl1 coding downstream 143593 40832635 ~ 40841032 (+)
XLOC_032225 NA non-coding upstream 119344 40545858 ~ 40551992 (+)
XLOC_032222 CU463231.2 non-coding upstream 189559 40475711 ~ 40481777 (+)
XLOC_032220 BX936393.2 non-coding upstream 219496 40448634 ~ 40451840 (+)
XLOC_032217 CU467879.1 non-coding upstream 621891 40043615 ~ 40049445 (+)
XLOC_032242 NA non-coding downstream 295555 40984597 ~ 40986135 (+)
XLOC_032245 NA non-coding downstream 391468 41080510 ~ 41082985 (+)
XLOC_032251 AL732567.2 non-coding downstream 505645 41194687 ~ 41194801 (+)
XLOC_032256 dre-let-7j non-coding downstream 765749 41454791 ~ 41454873 (+)
XLOC_032260 NA non-coding downstream 1076596 41765638 ~ 41773554 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_09760651_09770907 REREB coding CI01000340 null 9760651 ~ 9770907 (+)