XLOC_032236 (si:ch211-157b11.8)


Basic Information

Item Value
gene id XLOC_032236
gene name si:ch211-157b11.8
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 40775800 ~ 40783641 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062963
CAAGGAGTGAAGAGGTTGAGCTAAACCCTGATTTTATCTTAGTTTTTGAATGCGCCTGTATGACAGTGTGTGATTATTTGTAGATTCGAGATGGATTTGATGGTGGAAAAACATGCCTTCAGGTAGAcggtgagtgtttgtgtgtataggtatgagtgtgcgtttgtgtgtgttagGGGGTGGGTGAACCGGTGCATGTCAGACAGCAAAGAGCCACAGTTATCTAGGAATCTGAGCCAAAAGAGCCTCACAAACAGACGGGAGCGCGCAGGAGAGCGAGAGGGAGGGAAAGAGGAGAGAAGATCAAATAAAAGAGGACAGTAGGACAGGAGACTCGCTGGAGGATAATCTGTAGGACCTGATGACATAGCTACGAATCTGAAGAGAGAAACAACATCAGTGATACAGGAGTTTTCAGGCAGTGTACAGGTGTCTCTATCTCTCTGGACTCTTCTGGTGGCCTGAgcagcatgtgtgtgcgtgtcgtGCTGGTGTTTTTGCTGGGAGTGTATATGATGTGTGTTCGTGTGTGGTGTCAGAGGGACATTCTGGTGGCCGGACCCCCAAACAGTGCAACGTCAGCCCCCAAAATACATCAGCCACACTCTCAGGACTCGAGGCTCAGAAAGACTCCAGAGAACCGTAAACATGCACAGGTGACTGACACCTCTGAGCGGCTCATCCAGCTGCAGCGCTGTATGCTTCAACATGAATCAGTGGCTATGAGTCGGGGAGATGGATCAGACTCACTGGTCGCCTTTCTGGCTCTAATGGCAGCGGTGCTGACCGAATGTAACCTCCACTGCCATAGTCAAAGACTCCGAGAGATGGCCACCAGACTCGAAAGTGTGGTGGGCAAAAACGGGGAGAAAGATTTGCTGCTGTTACTGAAGAGTATCACACATTCTAAACCTAATAGCCTCAAACCAAGGACTCCTACAgTGCCTCCATCTGCAGGGCTTTACCCTCAAGACTGTCATGAAATCTACCAATTAGGAATCAAAGAGAACGGAATCTACACCATACAGCCTGATCCAAAGCAGCCAGCGCTGGAGGCTGTGTGTGACATGGTTTCAGCTGGAGGAGGATGGACGGTTTTCCAGCGCCGTTTTGATGGAAAAACTGACTTTAACCGAACCTGGCAAGAGTACCGTGATGGATTTGGCTCCCCGCAGACAGAACACTGGCTAGGGAACGCAGTTCTGTATGCATTAACAGCCAACGGGCAACACACACTCCGCATCACTCTACAAGATTGGCACGAACAGACACGCCATGCTAATTATAACAACTTTAAAGTGGCTGGAGAAAACCAGAGGTTCCGTCTGACTGCTCGAGAGTACCACGGTGATGCTGGCAATGCATTCAGCTACAGCAAACAGTACAATCATGATGGCAGAGCGTTCAGCACATATGACCGGGATCATGACCGCTACGCTGCTGGTAACTGTGCCCGCTACTATGGTGCAGGCTGGTGGTTTGATTCCTGTTTGGCTGCAAACCTCAATGGACGCTTCTACCATGGTCGTTACAGCGGCATCACAGACGGCATCTACTGGGGCACCTGGTATATACTGACTGAGTATCGCACTGGGGAAAGATATTCATTTAAGAGTGTTGAAATGAAAACGAGACCCAGGCGAAGCTAAGAAAAAAGTCTTTTTTAATGAGAATTTCTTGATATGTTATCAAACTCTTGCACTGCATTTCATCTCAAttgacatattttaaacaatCTTGTTTTTCTCAGAGTACACTATCCATTTTTAGTTACAccgtctgaaaaaaaaaaaaactgtggactTTATCTACCATAAACtgtaaagagtgatagaagtaaACTGAGAGTAAACCCACTGTAACTCGGAACAGTTAAGTTGacctaattttaataattatgcacatagttcatttacttaatcatttaaaggcaacaggtttactcactttaatttactttaaaatcaaTGGGTATACtcaatttaaaagtaaattaaactaatagctttttacagcgtagatATACAGTACAGATGCCACATTCAACCACATTAAACACTTACCCATTGAAGTGTCTAATGTGGTTGAATGTGGGACTATCTTGTAATGGTCAACGTCTTTCACTTACAATAT

Function

symbol description
si:ch211-157b11.8 Predicted to enable signaling receptor binding activity. Predicted to be active in collagen-containing extracellular matrix and extracellular space.

GO:

id name namespace
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0005615 extracellular space cellular_component
GO:0005102 signaling receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131127-436 Predicted to enable signaling receptor binding activity. Predicted to be active in collagen-containing extracellular matrix and extracellular space.

Ensembl:

ensembl_id ENSDARG00000060413

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062963 True 2133 mRNA 0.45 6 40775800 40783641

Neighbor

gene id symbol gene type direction distance location
XLOC_032235 slc26a6l coding upstream 43108 40723554 ~ 40732692 (+)
XLOC_032234 ccdc36 coding upstream 58752 40714811 ~ 40717048 (+)
XLOC_032233 rereb coding upstream 86758 40671336 ~ 40689042 (+)
XLOC_032232 eno1b coding upstream 106394 40661703 ~ 40669406 (+)
XLOC_032231 NA coding upstream 119754 40652905 ~ 40656046 (+)
XLOC_032237 gata2b coding downstream 10374 40794015 ~ 40803800 (+)
XLOC_032238 ruvbl1 coding downstream 48994 40832635 ~ 40841032 (+)
XLOC_032239 zgc:112163 coding downstream 90565 40874206 ~ 40875253 (+)
XLOC_032240 eif4enif1 coding downstream 138931 40922572 ~ 40947671 (+)
XLOC_032241 patz1 coding downstream 167586 40951227 ~ 40968320 (+)
XLOC_032225 NA non-coding upstream 223808 40545858 ~ 40551992 (+)
XLOC_032222 CU463231.2 non-coding upstream 294023 40475711 ~ 40481777 (+)
XLOC_032220 BX936393.2 non-coding upstream 323960 40448634 ~ 40451840 (+)
XLOC_032217 CU467879.1 non-coding upstream 726355 40043615 ~ 40049445 (+)
XLOC_032242 NA non-coding downstream 200956 40984597 ~ 40986135 (+)
XLOC_032245 NA non-coding downstream 296869 41080510 ~ 41082985 (+)
XLOC_032251 AL732567.2 non-coding downstream 411046 41194687 ~ 41194801 (+)
XLOC_032256 dre-let-7j non-coding downstream 671150 41454791 ~ 41454873 (+)
XLOC_032260 NA non-coding downstream 981997 41765638 ~ 41773554 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_09854550_09859638 NA coding CI01000340 null 9854550 ~ 9859905 (+)