XLOC_032238 (ruvbl1)


Basic Information

Item Value
gene id XLOC_032238
gene name ruvbl1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 40832635 ~ 40841032 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062965
ACGTTTTGCGGACGGTACTTCCTCAAATCGCCTTGGTTACCCTCATGGAAACGCGGGTCTCTTGTGTTTGATTTTAACGGCCTCTCGTGAGACAGGCGTGTGGTTGTTTTATTCACGCACAGCGCGTTCGATTAATTATTAAGAAACATGAAGATCGAAGAAGTAAAAAGCACAACCAAGACGCAGCGCATCGCTTCTCATAGCCATGTGAAGGGCCTCGGTCTGGATGAGGCTGGTAATGCTAAACAGTCCGCGTCCGGGCTAGTGGGACAAGAAAGCGCCAGAGAGGCTTGTGGCATCATCACTGAGCTGATTCGTTCCAAAAAGATGGCTGGCAGAGCCATTTTGCTAGCCGGACCGCCTGGAACAGGCAAGACTGCTCTAGCACTGGCCATGGCACAGGAGTTGGGAAATAAAGTGCCATTCTGTCCTATGGTGGGCAGCGAAGTTTATTCATCAGAAATCAAGAAGACCGAAGTGCTGATGGAGAACTTCAGAAGAGCCATAGGTCTGCGTATCAAGGAGACTAAAGAAGTGTATGAAGGAGAGGTCACTGAACTGACTCCTTGTGAGACTGAGAACCCAATGGGAGGCTATGGTAAAACTATCAGTCATGTCATTATTGGTTTGAAGACAGCTAAGGGGACCAAACAGTTGAAGCTGGATCCCAGCATCTATGAAAGTCTGCAGAAGGAGAGAGTGGAGGTCGGTGATGTTATCTACATCGAGGCTAACAGTGGGGCAGTCAAGAGACAGGGACGATGTGACACATTTGCAACAGAGTTTGATTTGGAGGCGGAAGAGTATGTACCGTTACCCAAAGGTGACGTACATAAGAAGAAGGAGATTATTCAGGATGTTACACTTCATGACCTGGATGTTGCTAATGCAAGACCACAGGGAGGCCAGGATATACTTTCTATGATGGGTCAACTGATGAAACCCAAAAAGACAGAAATCACAGATAAACTGCGAGGGGAGATCAATAAGGTTGTGAACAAGTACATTGATCAGGGTGTTGCAGAGCTGGTTCCAGGTGTTTTGTTTATTGATGAAGTTCACATGCTGGACATTGAGTGTTTCACCTACCTGCACCGAGCCCTGGAGAGCTCCATCGCCCCCATTGTAGTGTTTGCATCCAATCGAGGAAACTGCTTAATCAGGGGGACAGAGGACATCAGCTCTCCTCACGGAATTCCACTGGATCTACTGGACCGAGTCATGATTATCAGAACAATGCTGTACACTCCTCAAGAAATGAAACAGATCATAAAGATCCGAGCACAGACAGAAGGCCTCAACATCAGCGAAGAGGCATTATCTCACCTTGGAGAGATCGGTACCAAGACAACCCTCAGATATGCAGTGCAGCTGTTGACCCCTGCCAGTCTGTTGGCACGAGTTCAGGGGAGGGAAGTAGTCGAAAAAGAACACGTGGAAGAAATTAATGAACTCTTCTATGATGCCAAGTCTTCTGCAAAGATTCTACAAGATCAGCACACCAAGTTTATGAAATAACCTCAGCACTGATATCTGATATCTTTAGTTTTAAACCCCATTTTCTTGTCATTCTTAGGTAGAAAAAGTTCTGTTGtcattgttttttgtgtttggttttgaaaataaatctttttagATAGCAATGTGAATAAAAtggcaaaaagttttttttatattaatacatGACAAGTTTTTAATGTCTTATTAAATGTTTAACATCATTTCAACTAAACCAACAGAATAATTTTCTGTCTGACCAGAAACTTTTAATTGGAAA
>TCONS_00062966
ATGAATCTCCGTAAATCTAATCATTTGGTGTCTTTCAGGGAGGCCAGGATATACTTTCTATGATGGGTCAACTGATGAAACCCAAAAAGACAGAAATCACAGGTAACATGAATGAAGCTGGTTATCCTAACAGGATTTTGTATCGATCTGTGTTTAACTGtctttgtgtctctgtgtgtacGCAGATAAACTGCGAGGGGAGATCAATAAGGTTGTGAACAAGTACATTGATCAGGGTGTTGCAGAGCTGGTTCCAGGTGTTTTGTTTATTGATGAAGTTCACATGCTGGACATTGAGTGTTTCACCTACCTGCACCGAGCCCTGGAGAGCTCCATCGCCCCCATTGTAGTGTTTGCATCCAATCGAGGAAACTGCTTAATCAGGGGGACAGAGGACATCAGCTCTCCTCACGGAATTCCACTGGATCTACTGGACCGAGTCATGATTATCAGAACAATGCTGTACACTCCTCAAGAAATGAAACAGATCATAAAGATCCGAGCACAGACAGAAGGCCTCAACATCAGCGAAGAGGCATTATCTCACCTTGGAGAGATCGGTACCAAGACAACCCTCAGATATGCAGTGCAGCTGTTGACCCCTGCCAGTCTGTTGGCACGAGTTCAGGGGAGGGAAGTAGTCGAAAAAGAACACGTGGAAGAAATTAATGAACTCTTCTATGATGCCAAGTCTTCTGCAAAGATTCTACAAGATCAGCACACCAAGTTTATGAAATAACCTCAGCACTGATATCTGATATCTTTAGTTTTAAACCCCATTTTCTTGTCATTCTTAGGTAGAAAAAGTTCTGTTGtcattgttttttgtgtttggttttgaaaataaatctttttagATAGCAATGT

Function

symbol description
ruvbl1 Predicted to enable DNA helicase activity. Acts upstream of or within several processes, including axonemal dynein complex assembly; epithelial cilium movement involved in extracellular fluid movement; and regulation of heart growth. Located in cytosol. Is expressed in neural tube; neuromast; peripheral olfactory organ; and pronephric tubule. Orthologous to human RUVBL1 (RuvB like AAA ATPase 1).

GO:

id name namespace
GO:0006310 DNA recombination biological_process
GO:0003351 epithelial cilium movement involved in extracellular fluid movement biological_process
GO:0006338 chromatin remodeling biological_process
GO:0007507 heart development biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0070286 axonemal dynein complex assembly biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0060420 regulation of heart growth biological_process
GO:0016573 histone acetylation biological_process
GO:0000492 box C/D snoRNP assembly biological_process
GO:0006281 DNA repair biological_process
GO:0000812 Swr1 complex cellular_component
GO:0035267 NuA4 histone acetyltransferase complex cellular_component
GO:0071339 MLL1 complex cellular_component
GO:0031011 Ino80 complex cellular_component
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0097255 R2TP complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0003678 DNA helicase activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0043139 5'-3' DNA helicase activity molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
ko04310 Wnt signaling pathway
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-030109-2 Predicted to enable DNA helicase activity. Acts upstream of or within several processes, including axonemal dynein complex assembly; epithelial cilium movement involved in extracellular fluid movement; and regulation of heart growth. Located in cytosol. Is expressed in neural tube; neuromast; peripheral olfactory organ; and pronephric tubule. Orthologous to human RUVBL1 (RuvB like AAA ATPase 1).

Ensembl:

ensembl_id ENSDARG00000002591

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062965 False 1777 mRNA 0.44 11 40832635 40841032
TCONS_00062966 True 867 lncRNA 0.42 4 40837650 40840901

Neighbor

gene id symbol gene type direction distance location
XLOC_032237 gata2b coding upstream 28835 40794015 ~ 40803800 (+)
XLOC_032236 si:ch211-157b11.8 coding upstream 48994 40775800 ~ 40783641 (+)
XLOC_032235 slc26a6l coding upstream 99943 40723554 ~ 40732692 (+)
XLOC_032234 ccdc36 coding upstream 115587 40714811 ~ 40717048 (+)
XLOC_032233 rereb coding upstream 143593 40671336 ~ 40689042 (+)
XLOC_032239 zgc:112163 coding downstream 33174 40874206 ~ 40875253 (+)
XLOC_032240 eif4enif1 coding downstream 81540 40922572 ~ 40947671 (+)
XLOC_032241 patz1 coding downstream 110195 40951227 ~ 40968320 (+)
XLOC_032242 NA coding downstream 143565 40984597 ~ 40986135 (+)
XLOC_032243 tgfa coding downstream 151377 40992409 ~ 41009381 (+)
XLOC_032231 NA non-coding upstream 176589 40652905 ~ 40656046 (+)
XLOC_032225 NA non-coding upstream 280643 40545858 ~ 40551992 (+)
XLOC_032222 CU463231.2 non-coding upstream 350858 40475711 ~ 40481777 (+)
XLOC_032220 BX936393.2 non-coding upstream 380795 40448634 ~ 40451840 (+)
XLOC_032217 CU467879.1 non-coding upstream 783190 40043615 ~ 40049445 (+)
XLOC_032245 NA non-coding downstream 239478 41080510 ~ 41082985 (+)
XLOC_032251 AL732567.2 non-coding downstream 353655 41194687 ~ 41194801 (+)
XLOC_032256 dre-let-7j non-coding downstream 613759 41454791 ~ 41454873 (+)
XLOC_032260 NA non-coding downstream 924606 41765638 ~ 41773554 (+)

Expression


Co-expression Network