XLOC_003224


Basic Information

Item Value
gene id XLOC_003224
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 7281239 ~ 7286310 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008546
TATCTGCGTATTTTGTCTGCTGATGCTAGTGGGCTGGTTGGTTACTAAAGGTGAAATGTTTCTGGTTTGCCTTGATGGATTCTGCATGAATGGTATTCTGACAGGAGATTTCTGTGTTTTCCTGTCTATAGGGGATTTAGAGTTTTGATCAATGTTTGAATTTCTTCCTCTTCTGTCTGGCGGGCTGGATGGTGCTGATGCCACCTTCTCTGTTCCTTTTATGGGAGGCTGGGAGTAAAGCTTGAGCCAGACATAAATGACAAAACTGACTCAGACTCTGATGAGGGTTCCTGGGACTTTGAAGCTTGTAACTTGGTTATGATTGTATTCGCTCCTTCTTGTATTGCTCTCCATTCAACACTATTGAGATCAGAGTCCTTGTCTGATGCCATTTCATCACTATCTAGGTCATTATCAAGACCCCTGTCCTCTGCTGCTTTCTGAAGAGTAgctttttgtttgtgctttttcTCAGCTTTTCGTTTTCGGGCAGCTTGCCTTTTCTTGTGTTGTGGCATAGCAGATGTTATGCATTTTATCAAAAGATCATCTTCTGAATCCATGCTGACTGAACTAGGCGAGCTGTTCTCTTCAAACTGGTTGAGGTCTTTCTGTGACTTTGGATGGCACTGAAGGTTGGACATTATGTTATGTCTATTCTTTATCCACGTATGTTGAGGATTTTCATGTTCCTCAAATTCAGCATCACTTAAAGAACTAAGAGAGGAACTCAAAGAGTAGCATGGAGGTGCTTCTTCTAAAattagattttgtttgattctgtGAAAACCATTTTGGCGGGACTGATAACTGTTGACTTGATCTTGTATGTTAGCATTACGTATTATATTGCTTGAATCATATTGTTGTTTCCGTCCAGTCCTATTCATCTGTCCATCATGCCTTTCCATTTTATGACAAATGCCTTCTGTAGATGATGGATGACGCCTCGACTTTAGGGATAGAGTGTTTTCCTGCACATGACTTAGATAGCAGGTTTTCTGATTTTGGTACACCTCAGTGCTTTGTTTTCTCATGGGAAAATCCAACTGTGGCATGCTTCTTGACAGATTCTGTCCTTGCTTTTGAATTTGTCTAACTGGAGACTGGCTTTGAATTCGTTGCTGGGTCATTTTTGCTGCCATCTCTTTACTTTGTATTAGTAATCTCTGAGTGGGAACCATTCTTCTGATCGTTTTGTTCAGTTGATTCGTGACTAGGTGAGACTGACATGCTATTTTAGTTGGTTTGTGGAAGCGAGAGAACATGCGTAGGTCTTCAATTCTCTTTGCCTCGATATCAACAAGCTCTTGTGTCTCTTTGTTTCTTCGCCAGTCTTTCATGCCTTTAGTTCTGGCTGGATATTGAAGAGTTTCATCACTCAAGGAAGTGGTGCTTGAGAAATTGATGGGTGTACCTTCGGCAGAGTCTGTGTAAGAGGAATCATCATGATAGATTTCTTTCGAAGACATTCCAAGCTTTTGTCCAGTACACATTTGATTGTTTTTGTTCTGCAGCACCATATAAACTGGCACAGATTTTCGAGCCTGCATGTTGATTACTTGGTTTGAGAGACTGGGTATCACAGTGGACCTTACCTTCTTAAACCTGGAAGGCATGGCGGAATTAATGCACTCTTTGAGAATTTCAATGTCATCATCTGAGTTGCCTTCACTATATTGGTCTTCCATATCCTCTTCTTTTTCAGACTCCTctggatcattgtcttgttggTTTAGCAAAGGGGTAAGTTTGAGCTCCACATCTTTCTGAACATAGTGTTCATGCAGTGGAAGGGCACTCAGACTTGAGGCACACGAGAAATTCTCAATCGGCTTTTCCACAGTGAAATAGATCATTGTGTCCAAATCCTGAGGTAGGTTAAACCTTTCTTTAAAGTCTGCAATTTCCATAAACTTGCGCAAACTACTCTCCCATTGGCTTCCTACACCACTAAGATTCTGAGCATCTGCTCCACCTGACTCTGGACAGCATGGAGTTTTACTGCGACTAGGAGGCATTGTTTGTCCCGGGCTGTCTGGTAGGTCACTGGGGCTTACAGTTCCACTTATCATTTCACTACATGGATCACTCTGAATAGAGCTGGCAATTGAAGGAGATTCAAAGCTGCCAAGTGAGCTCACTGAACTACAGCGACTCATTACAAGAGGTGTTTCGTGAATGTAGTTGTCCGAAGAACTGGATGGCGTCCTGTCCTCAAGTATTACTGGGGACACTCCTCTAAGGAACCTCTTCTCATTTTTGATTGTACCAGAGATCTCAATTGGGTCAGAGCTACTGATTTTCTGATCAGTTACTAATAACTGACTGTCACTCAAGTCATCAAGTGTCTCGTTCTCATCCTCTTCATCTTTTCTCTCAACATTCACGTCTTCTACCTCTATGATTTCCAATGAGGAGTCACTTTCTAGCTCATTTTCAGTTTGACTTTGTCCATCAAGAGCTCCATCCCCAGAGGACAAAGAGGACAGAGAACTGCAACGAGAGAAGCATATTGGAGTGTTCTCTACAGAATACTTCTGAGGAGTTTCCAGCTGTCCTATTGTGGGACTTCTTGCAGAACATATTGGGGAAAACTTGCTAATGCTTCCACCAGTCATAACTGCTGGAACCCAAGCTTGCCTGCGCATTGCTTGAGCTGCCTGAACATTAATTGCAGTCTTTGCAACACCAAACTTGGCAACACTCTGGATCAGTGGAACATGCTGATAGGAGGGAGACAACTTGACAGTTGGTATGCTAGTTTCTGAAGAAACCTTTGTTGAAACAGTTGCAGGGGTTGATATAAATGGCTCTTGGCTTTTCTCTGTATCTGTGGATCCTGAATCAGGCAAAATAGCATCTTTGTTTGCCTCGAAATCTCTTTCAGGTATTTCATTTTGACACAAGACTCTTGAAATATGTACACCACTAGTCAGTGGTTCCTCATGAGCTACCTTAAGGTCAAGCTTATTTGGACGTCGTTGTTCTGTTGGTCTGGCAGAGGGATGAGTCTGGTCTTGACTGCCACAATAGCCATCACTGATGCTACCACTGTTAAGGCTGTCATTGGATAAGCTTGAGTTTGTTGTTTTAAGACGCATAAAGGCATGTGCTCTGCTGAGACGCTCTTTAGGAGAAAAAGTGCTGCTATCTGAGAGAGGACATGGGGAGCATGAAATGGCTCTCGCTTCATGAAGCTCATCTGGCCCGTAATTCCAATCCAAAAAATGATCTTCTGAACTGAGACTGAAGCTGTCCTCTGATGATGTATGCATGGTAATGTCATCTACCAGTTTGTCAATTTTAGCCACTGTGTTGGTGATCTTCTTGGCCAATTTTTCAGCTGCCACAGTCACTTCGTCGTCAGGAGGTTGTGATCTTTTAATGTCTGTTTGAAAGGTTTCAATGTCTTGCTCGGGCTCCCCCTCGCGCTTACGAAGCTGCGTATTAAGGAAGTTAGAATTGTTCAAGAACATGGAGAGCATGGAAAATGTCCCAGTGTCCAGGCTGGTGGATACATTAGGTGCTTCATCATCATCAAAACAGCCTGAATCTGAAGCATAGTCCTTTGCTAGGCTCTCAATATGCCTCAATGGCTTGTTTATATTGGCATGCTTGAAACTTTGCTTCTCAAGTGTGTCAAATGTTTCTGCTAGATGCTTTGCATCCAACTCAGCCTCTAATGCTTTCTGCTTCCTCATATAGAGGGACGGCATGCATGATCCCGGGGATATAACAGCTGCATCTTTATATTTGAGTGGACGATTTGTGAGGAGGTTTCGCAGAGCTGCAGCACTTCCCATGGCTATCATTTTGTGCTTTGAGTTGATGAGATTGCGTAGCATGCTTACAGCTCCCAGATCCCACAGCAATTCCTGGTCTTTTGGACTTCGTGCAGACAGGTTCCAGAGGGTTCCACACGCATTACTCACAATAGTCAAACTGTGAGATCGCAAATGCTGTAGCAGAGTCTGAAGGCAGTTATGATCCCTGAGGATTTGCCTGCATTAGGAAAACAGGAGAAATTTAAGTAATATTACTGATAATTTAACCAAGAGctctgtttattttgtaaatgtaaacaaacttGATACCTGTAATCATCTCGGGTGGCGATGAGGCTGGACACATTGCGCAGAATGCCTCCACCGCTCTCAATAATGGCCAGTGAGTTGGTTTGGCATCGGTAAGTCAAAGTGCTAACCAAAAAGCCAAGAGCACCATCAACAGAGCAAATTGCCACCTTATTCTCAGTGCTGTGCGCTGACAAATTCCACAGTGCACTTAACACACTCTTTAATGTGGATTCCTATGGAGAAGACCATGAAAAGTTTAATACTGAGTGGTAATGAAACACCACTTTTAATGACTGAAATCATAAAGAAATTGATTGTACCTTTGTAGCCTGCAATGCACAAGTCATAAGTCCTGATACACTGCCGACATCCCTCAAAGCCCTCTTACTATTGATATCAGCACGCCATGACAGGTTTCTTAGTATACTTGACACAACCTAAAAATAATGACAGATCACAGAAATGTTGTGAGTCAAATACTTAGAAATGGTTGAAtcaaaaaatactattaaaactattaaaaagtagCTTAAATACCTGCTGTAATTCCTCGCTATCTGATGCTAGCTGTGCAACGATGGCTTGAAGACAATTTTTCTTTGAGCAAAGTGTAGCCTGAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008546 True 4699 lncRNA 0.42 2 7281239 7286310

Neighbor

gene id symbol gene type direction distance location
XLOC_003223 si:ch73-238c9.1 coding upstream 980 7276824 ~ 7280259 (+)
XLOC_003222 reep6 coding upstream 6861 7261981 ~ 7274378 (+)
XLOC_003221 nwd1 coding upstream 34252 7214353 ~ 7246987 (+)
XLOC_003220 thop1 coding upstream 69142 7183025 ~ 7212097 (+)
XLOC_003219 tmem38a coding upstream 101723 7158723 ~ 7179516 (+)
XLOC_003225 diras1a coding downstream 38394 7324704 ~ 7341807 (+)
XLOC_003226 adgrl2a coding downstream 146223 7432533 ~ 7737642 (+)
XLOC_003227 CR450813.2 coding downstream 496204 7782514 ~ 7783314 (+)
XLOC_003228 NA coding downstream 539043 7825353 ~ 7826072 (+)
XLOC_003229 NA coding downstream 593832 7880142 ~ 7971030 (+)
XLOC_003250 BX324177.11 misc downstream 4059493 11345803 ~ 11346099 (+)
XLOC_003255 BX324177.14 misc downstream 4086576 11372886 ~ 11373182 (+)
XLOC_003257 BX324177.13 misc downstream 4100052 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 4131723 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 4143083 11429393 ~ 11429689 (+)
XLOC_003217 NA non-coding upstream 129232 7149071 ~ 7152007 (+)
XLOC_003218 CU929070.2 non-coding upstream 130333 7150820 ~ 7150906 (+)
XLOC_003216 CR925817.1 non-coding upstream 177703 7095176 ~ 7103536 (+)
XLOC_003215 FQ976909.1 non-coding upstream 324860 6946591 ~ 6956379 (+)
XLOC_003212 BX936438.2 non-coding upstream 418871 6862252 ~ 6862368 (+)
XLOC_003234 CR847563.1 non-coding downstream 1291744 8578054 ~ 8580557 (+)
XLOC_003235 NA non-coding downstream 1389659 8675969 ~ 8677720 (+)

Expression


Co-expression Network