XLOC_032241 (patz1)


Basic Information

Item Value
gene id XLOC_032241
gene name patz1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 40951227 ~ 40968320 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062972
GGCCGCTTGCCtattggttaaatccacccctgcaatcatcaaattattttatttaaaaaataattaaaagactcAAATGTTTTAAAGCACTTCAGGGTGAATAAACTGAGTAAAATTTCATGTTTGGGTTAACTGTCCTTCCTTAAAAGTATTTGTGCATCTGATTGTCAAAGCAGCTAGACACACAGAGCCAATGTGCACCAATTACCTTGCTCTATTGTGTCTTTGTGCTTGATCTGTTCCCTGGCAGTTCAAGACAGCAGCTGTCTGACCGACTATCCAGGCTACAGCGTCCTACGAGAAGAGTCCTCACTGTTCACTTGGATTATATACACGTTTATCGTACGTTTTCCAAGTGCTTACAGTGtcagaaagagaaaaagagacgGTCTGCTGTCATGCATTGAGTGTCTGGCGTACATTTGGGGGAGGGGGCTCGCTGAAAAACAAGGATGTGAATTCACAGCAGCGCCGCAAACCAGGAAGACGAACAGCATGCGAGCTGAAAACTTCAATATCGCTGCGTGAATAGCATCTCCGTGTCCTTTATAAACTTGGAAACCTGATTAAACTGCGTGAAAAAAAATTGAAGATATTAAACGCGGACGACACCCCCCTCCCTTTAAGCAAAGGTCAAAGGTTACAGGAAGCTGGGGGGCTGCCATTTTTCCCCCTGCTAACATGTTAGATGCTAAAAAGGCAAGGAGTGGTGGTCGCTGCTGAGCGCTTGTGTTTATTAGGTGTTTGTCATCGGTTTGCCTCTTCTGTCGTATGCGTTAGGCTCGGTTGTTGAATGAAGGCGGCATGGAGAGGACAGAGCAGCCGTGGAATTCCTCCTACACGTACCAGGTGAGCAAACACAGCGCCGAGATGCTACACAACCTCAACGGCCAGAGAAAAGATGGAGGCAGGTTTTGTGATGTTATCTTGCGCGTCGGAGAGGAGAGCTTCCCCGCGCACAAGGCGGTGCTGGCGGCGTGCAGCGAGTATTTCGAGTCGGTGTTCAGCTGTCAGACGGAAGACGACGGCCAGGGCAAGGAGCTGGAGATGCACACGATCAGTCCTAAAGTTTTCCGAGACATCCTGGACTTCGCGTACACCTCCAAGATCGTGGTGCGCCTGGAGTGCTTCCCGGAGCTGATGACCGCGGCGAAGTTTCTACTCATGCGGTCCGTCATCGAGATCTGCCAGGAGGTCATCAAACAGTCCAACGTGCAGATCCTCGTGCCCCCTTCCCGCGGAGGCGAGCACAGCCTGTTCAGGGCCGCGGAGCAGCTGTCATACCCCCTACCCGTGGACATGTCAAACGGGAGCGTGTCCAACGGCGCTGTGTTTACCGACAACAATGACAGCGACAGTGCCGATCCAAGCAACATCTCTCAGCCAGCCGCTCCCGGGGCTCCAACGGCCGATCGCTTAGCGGTTTCACCGTTGGAGTTTTCCAGCGGCCACCTAAACATCGACGGCTTTAAACGAGGAAAACCCAGACCCAAAAAGGAGCCCATAGCGCAGCCGGTCACTTACAACAATAGCACTGGTCAAAACGAAGAAGGGGCCCTTTTCTCCTGTGGGATATGCGGGAAGATGTTTCCAGACGAAGTCCAGTTGAGAAACCACGAGGCGCAGCACGGGACTTTCACCGGTGTCATGAGCAGTGGAATAGAGCTGGTCGTTGTTGACGGCCCGACGATGATCTCTCATCCTGGCCAACAGAGATTTCAGGGAAACGGACTACCTACGGACACCCGTAAACGCGAGAGGACGAGACGACACGTCGCGTGCGACTTGTGCGGCAAGGTTTTCCGAGACGTCTACCACCTCAACCGGCACAAGCTGTCGCACTCCGGCGAGAAACCGTACGCGTGTCCGGTGTGCGGGCTGCGCTTTAAACGCAAAGATAGGATGTCTTACCATGTGAGGTCTCACGACGGCTCCGTGGGTAAGCCCTATGTCTGTCAAAGCTGCGGGAAAGGTTTCTCCAGGCCAGACCATCTGAATGGACATATAAAACAGGTGCACACCACAGAGAGACCTCACAAGTGTCAGATTTGCAACGCGTCCTTCGCAACACGAGATCGCCTGAGGTCGCACCTGGCGTGTCATGAAGATAAGATACCCTGTCAAGTGTGTGGGAAATATCTCCGGGCTGCCTACATGACTGACCACTTGAAAAAACACAGCGAAGGACCTCATAACTACTGTGGAATATGCAACAAAGACGGGCAGGAGAATGCTGGGAAATGTCCTCATCAGGATTCTGACGGTTCAGATGCAGTTTTCGGTGACCTTTCCAACGGAATGGATCTCAAGGCTGAACATAAAGTTGAGGGAGAAGAAATGGAGGTGACATCCTTCATCTTCAACGGCCAACCTGATGACGCAGTGACCTCACCAGAGGGCTCCAAAAACATCCCAACAACAGACCAGGAAAAGAAGTTCGCCTGTGGCGAATGCGGTCAGGCTTTCCGCACAAAGTCTTACCTCAACAAGCACCATCACCGTGTCCATAAGAAACGTGCTGCGGCTGCCTCCAGTCTTGGAGACCTCGCCTCACCCTTTTCCCCCCAACAGAATATGTCACTTCTTGAATCCTTTGGCTTTCAGATCGTCCAGTCGGCCTTTGCCTCCTCACTTGTGGACTCTGAGATTGGCAGCAGTGGAATGGGTTTAGGGGAGAAATGACCCTTTTGAGAGGCATAACCAAACTTTTATAACTGCGAGTTTAATCTGTTGTCTCATACTCCTTGACGCCATATGTAGActacttttgttttgttcaatgtttttaattagtatgatgtttgttaatgttttgaCTTTGCCATCatgagctatgtttccatctaaacaTAAATCTTATGCGCAGAACTGGAATATAGGcataaaacattaacaaataaaacaccGTTTCCTTCAAATGAGTCTAAGAAGACAACAATCGTCACATTCTGATGAACTGAATGCAAATATTAGAAAGAAAAAtggatttttgaaaaataaataattacttgcGCCTTAGAAGCTGACACACAATGAAGGTGAGGGGTGCAAGACCGCTTTTTGATGgacagggatttttttttttttgatgttttacaATTTGCAATGTGTCAAATTGCACCCATTCTTATTATCGCATGATCTTTTATAACAAAATCCCCTGACATTTTTGATGCTCATAATGGAATTTATGTAGTAAATGTGTCTCCATTATagtttatacaatttattttgggaaaaaaacttttatttcactcagttatgcgcatatgtttatgtacatttttaaaatgtatgcacatcttgacATTTCCATCTAGAAATTTCAATTTGATATTTCAAAATCTGCGTGAAAATggctggatggaaacatagctgttTTGATTCCATTGTGGTGTGAAGCAGCTAATTAGTTTATTCCACATTTGACAAGTCCTCCACCTCTGACATGTATGTTTATTATCACGTGTGTCTGCTTCCGGATTCATGGGTTGAGGATGATGTTTGATGTAAAAGACAAACCAATGCCCTAAATATGTTCCGAATGTATACCTCTAGGTTGTTTTTGTCCAGGCAGTGTCCATGTCCACACATCGAGTACCTCACAGAGAACGTAACATTAAGGAGCATTTCAATTTTAATGCTAAAAACAAGTTTTCACCATCAGAAAACAAAGCTGGAGTCATTAGAACTGTTTTGTAGTCCAATGACTACTGAAGCTGTAGACTACTGATGTAAACGAAGGTCGCTTTATCTCACAATTCTCACTTTTCTCTCAACTGTgggtttatatagcacatttcagtTTTCCCCTCATaccacagagaaaaaaaatctaggtATATGATTAAATCACTCAGTTGCAAGTTAATAAACCTTTCTGGGATTATATTacaattccattttttttttcaagattaaagatgtaaaaaaattaaaagtccaaAATTTGTAGAAATAAAGTTCTGAGGGGAAATTAAATTTTTCCAACTTGGCTATTGGGAGgtttaaactcagagttttttttttaagaaaagattAATTTTAAGATCTAAACTTGCagttcttgcaaaaaaaaaagtatgaaatctattttttttttttttgaagattaaAAGATGTTAAATGTTGAAAAGTCCAAAAATTCAAGGTATAAAGTTCTGAGGGGAAAGGAAAGTTTTCCAGTTTGGCTTTTGTAAgtttaaaattaatcatttttttctgaACATTCGAAGTTTAAACCTCACAATAGCCAAGTTGTAAAACTTTCTTTTTCCTCAGAACTTTATACCTTGACTTTATAACTATGAACACACCTTTTAATCTTGTAAAGAATTAATTCATTCTTGCAACTGCATGTTTTCCAACTTGACTATGGTGAGGTTTAAACTCAGAATTTTCAgaagaaattaataattttaagatCTAAGCTTGAAGTTCTTGCAGAAAAAAGTTTTCTTAGTTGTACTgttataattatatttgtttttattttattttttatttattttttattaaagatatgttaaaaattttaaagtcCAAAAATTCAAGATATAAATTTATGAGGGGAAAGGAAAGTTTTCCATCTTGGCTGTTGTGAGGTTAAAATTCAGAATTTTTTAGCAGAAATGATTAATTTCAAGATCTAAATTTGCAGTTCAAaggattaattaattttattgtttttttttttttaagataaaaagtTGTGTTAAGTTGAAAAGTCCAAAAAGCCAATATATAAAGTTGTGAGGGGAAAGCAAAGTTTTTTTCAACTTGGCTATTGTGAGGTTTACACTACAAATTTTCAgaagaaattatacattttaagatcTAAACTTGCAGTtcttgctggaaaaaaaaaataattctgtagttttttttatgattaaaggATGTGTTAAATGTTGAAAAGTCCAAATTTCTGTTGAAAATTCTGAGTTTAAGATCTAAACATGCTGTTCTTGCAGAAAAAGGTATGAAttaattatattgtttgtttttttttagattaaaagaCGTGTTATGTTGAAAAGTCCAAATATTCAAGATATCAAGTTTAAGGGGAAGGAAAATTTTCCAACTTGGCCGTTATGAGGTTGAAGTTTGAGAAGAAATGATTAATTTTAAGATCTAAACATGCAAGAAAAAAGTATGAATTGTGAGGAAAAAAATTGAAatcattttcttatttttgttaCTCTGGAAAAAAACAAGCTTCCATATATGACACAAAACCTACATCACCTACTTCAACATTTTAGTATGAAATACTTTCGTCAGTTATTTAAATGAAATCCTTCAAAACTTAAGGCCAAACGATGGCTGTGATCTCAGTAAtattttgtgctttgtttgtCTTGGATAGTACTGAAACAGATTGCTTTTGGTCACGAGATGTGTGTCTGTTTTTAACGTCCAACAGGGACCAAATTCAGGTTTCACTGTAAGATATAGCAAGAAgcaaagaatatattttattaacttattgaTACCAGTGTCCAagtctcctttacaaaaaggtaTATATATTGAGTTGTTgcaacatgctttttttttcctttttaaatcatgCAGCCGACAGGAGGAGAGCGTGAGTGTGATGACGTGTGTTTGTGTAACACGAGTGTATGCTGCGATCTCTCTGATGTCCTTTATCTCTAGAATGTAATATAAACAGAGGGCTTTGTaatcttttcttttcttaaatATACCAGAGTTTTTCTAAGTGGTTCAATACATTCCTGCTTAACTTAAATTCTTGTCACTATACATGACGTataacattcatatatatatatatatataaagcaaatatgtatatatgtatggccAATTATGTTAGTTTTTGTGAACGGGATCCTTGTAAATAGATATTTTTCTGGGCTTTGAATGAACGAATGGAcgtttttatgctttaaatacTTGTTTTAAGTGGATAATGACACATCCACACTTTTGTTGTGTCTTGATTATTATTATGCAAGtaattgagtgtgtgtttggtgttAGCCTGTTCCTCTGAATGCAGTGTTAATGCTGGTTATATTTCCCTTTACTTTACCCTGCAGGTTATTTGTATAGTCTCCCATCAACTTATATGTATTTGGAAGGGCAGTTTGTCATTCATGATGGAAGCTGTCAGTGAATTTCCTTTCTGTTAACATGTAAAATCTAAAGCAGGCTGATCTGAGCAGTGGACTATGCCGAGTATGCTCACTTATTTGACTAATCATTGctaatttaacatgttttaattgaaatattattCTTTTAATAGTAACAATCATCATCTGCCTGGCATCATAGTGTGATCTGAATATTTGCAGCCCTTATTTATTTACCAATTAAAaatggtttgatttttttttcctattattattattattaatgttattctaTGTTTGTCTAGTAAGGTGTTCTGGCTTATTACATCACTGGAAACGTTTTTTTTTCTAGCTTATATATTCAATTACTTGTATGTTGCAAAGTGCCTTCCCAGTACTGATTGTGAACAGCGATGGGTAggaaaaatctgtcatttaaaGGACCTATCTTTAAAAAGAACCCATATACAAACAGAGTTGCATTGACACTTTTGTATAAAGACATGCACATAGAGAAGTGTACATTTGTACATGTTTGGTATTctacctttttttgtttgtttgttttctgacaAAATGTTGTTTCTCTGCAATTTATGTCACGGCGTTGATCAATTTTTGGACATTTGGATATAAGCATACTTTTCTATTGATGTTTGTTTTTGTACACTGTTTTTCGTGTCTCTGTCTATTTGGCACAGAGATGGgtataaaataaaactgtatttgaGAATTTTC
>TCONS_00062973
ATGGAGAGGACAGAGCAGCCGTGGAATTCCTCCTACACGTACCAGGTGAGCAAACACAGCGCCGAGATGCTACACAACCTCAACGGCCAGAGAAAAGATGGAGGCAGGTTTTGTGATGTTATCTTGCGCGTCGGAGAGGAGAGCTTCCCCGCGCACAAGGCGGTGCTGGCGGCGTGCAGCGAGTATTTCGAGTCGGTGTTCAGCTGTCAGACGGAAGACGACGGCCAGGGCAAGGAGCTGGAGATGCACACGATCAGTCCTAAAGTTTTCCGAGACATCCTGGACTTCGCGTACACCTCCAAGATCGTGGTGCGCCTGGAGTGCTTCCCGGAGCTGATGACCGCGGCGAAGTTTCTACTCATGCGGTCCGTCATCGAGATCTGCCAGGAGGTCATCAAACAGTCCAACGTGCAGATCCTCGTGCCCCCTTCCCGCGGAGGCGAGCACAGCCTGTTCAGGCTGTCATACCCCCTACCCGTGGACATCGTGTCCAACGGCGCTGTGTTTACCGACAACAATGACAGCGACAGTGCCGATCCAACGGTTTCACCGTTGGAGTTTTCCAGCGGCCACCTAAACATCGACGGCTTTAAACGAGGAAAACCCAGACCCAAAAAGGAGCCCATAGCGCAGCCGGTCACTTACAACAATAGCACTGGTCAAAACGAAGAAGGGGCCCTTTTCTCCTGTGGGATATGCGGGAAGATGTTTCCAGACGAAGTCCAGTTGAGAAACCACGAGGCGCAGCACGGGACTTTCACCGAGCTGGTCGTTGTTGACGGCCCGACGATGATCTCTCATCCTGGCCAACAGAGATTTCAGGGAAACGGACTACCTACGGACACCCGTAAACGCGAGAGGACGAGACGACACGTCGCGTGCGACTTGTGCGGCAAGGTTTTCCGAGACGTCTACCACCTCAACCGGCACAAGCTGTCGCACTCCGGCGAGAAACCGTACGCGTGTCCGGTGTGCGGGCTGCGCTTTAAACGCAAAGATAGGATGTCTTACCATGTGAGGTCTCACGACGGCTCCGTGGGTAAGCCCTATGTCTGTCAAAGCTGCGGGAAAGGTTTCTCCAGGCCAGACCATCTGAATGGACATATAAAACAGGTGCACACCACAGAGAGACCTCACAAGTGTCAGATTTGCAACGCGTCCTTCGCAACACGAGATCGCCTGAGGTCGCACCTGGCGTGTCATGAAGATAAGATACCCTGTCAAGTGTGTGGGAAATATCTCCGGGCTGCCTACATGACTGACCACTTGAAAAAACACAGCGAAGGACCTCATAACTACTGTGGAATATGCAACAAAGGTTTTTCTACTGCATCCTACTTAAAGGTGCACGTAAAAACGCACCACAGCTCGTCCATGCTCCCTTCCTCTGCAGCACATCAGTTCCCTGAACCACGCACCAACAGACCACAGACGCACAACGGCGCCCCCTACCACTCAGGACGCCAGTGCGCAGTGGAAGACCTTTGCACCAGTCGCCGACTCCTGGTTACCTTTCCTGAGACAGAGGGGTCTTTTCGGGGGCTATCTGGGCCAGTTCTACCCCAGCCTGTCCCCCCGGGCCTTCAGCCTGAGCTGCTCATGGGCAAGCCAGCACCGGGGTTTCCACTTCATGGACCTCTTCCAGACGGGCAGGAGAATGCTGGGAAATGTCCTCATCAGGATTCTGACGGTTCAGATGCAGTTTTCGGTGACCTTTCCAACGGAATGGATCTCAAGGCTGAACATAAAGTTGAGGGAGAAGAAATGGAGGTGACATCCTTCATCTTCAACGGCCAACCTGATGACGCAGTGACCTCACCAGAGGGCTCCAAAAACATCCCAACAACAGACCAGGAAAAGAAGTTCGCCTGTGGCGAATGCGGTCAGGCTTTCCGCACAAAGTCTTACCTCAACAAGCACCATCACCGTGTCCATAAGAAACGTGCTGCGGCTGCCTCCAGTCTTGGAGACCTCGCCTCACCCTTTTCCCCCCAACAGAATATGTCACTTCTTGAATCCTTTGGCTTTCAGATCGTCCAGTCGGCCTTTGCCTCCTCACTTGTGGACTCTGAGATTGGCAGCAGTGGAATGGGTTTAGGGGAGAAATGA

Function

symbol description
patz1 Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleoplasm. Orthologous to human PATZ1 (POZ/BTB and AT hook containing zinc finger 1).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005654 nucleoplasm cellular_component
GO:0001227 DNA-binding transcription repressor activity, RNA polymerase II-specific molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-111223-4 Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleoplasm. Orthologous to human PATZ1 (POZ/BTB and AT hook containing zinc finger 1).

Ensembl:

ensembl_id ENSDARG00000076584

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062972 False 6848 mRNA 0.39 4 40951227 40968320
TCONS_00062973 True 2109 mRNA 0.55 11 40952031 40964154

Neighbor

gene id symbol gene type direction distance location
XLOC_032240 eif4enif1 coding upstream 3556 40922572 ~ 40947671 (+)
XLOC_032239 zgc:112163 coding upstream 75974 40874206 ~ 40875253 (+)
XLOC_032238 ruvbl1 coding upstream 110195 40832635 ~ 40841032 (+)
XLOC_032237 gata2b coding upstream 147427 40794015 ~ 40803800 (+)
XLOC_032236 si:ch211-157b11.8 coding upstream 167586 40775800 ~ 40783641 (+)
XLOC_032242 NA coding downstream 16277 40984597 ~ 40986135 (+)
XLOC_032243 tgfa coding downstream 24089 40992409 ~ 41009381 (+)
XLOC_032244 entpd8 coding downstream 70437 41038757 ~ 41060423 (+)
XLOC_032245 NA coding downstream 112190 41080510 ~ 41082985 (+)
XLOC_032246 fkbp5 coding downstream 127738 41096058 ~ 41117242 (+)
XLOC_032231 NA non-coding upstream 295181 40652905 ~ 40656046 (+)
XLOC_032225 NA non-coding upstream 399235 40545858 ~ 40551992 (+)
XLOC_032222 CU463231.2 non-coding upstream 469450 40475711 ~ 40481777 (+)
XLOC_032220 BX936393.2 non-coding upstream 499387 40448634 ~ 40451840 (+)
XLOC_032217 CU467879.1 non-coding upstream 901782 40043615 ~ 40049445 (+)
XLOC_032251 AL732567.2 non-coding downstream 226367 41194687 ~ 41194801 (+)
XLOC_032256 dre-let-7j non-coding downstream 486471 41454791 ~ 41454873 (+)
XLOC_032260 NA non-coding downstream 797318 41765638 ~ 41773554 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00018585 NA coding CM030135.1 CM030135.1 14599262 ~ 14614445 (+)