G1327863


Basic Information

Item Value
gene id G1327863
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 77528442 ~ 77530779 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1516753
TTTTCATGCCACATCTAAAAACCAATATCAAAATCGGTGACTTTTGCCTCCCTAAAATCAGTATCAGACCCACAAATCCCATACGGGTGTCGGGCTCTAGTTAACATATCACATAAATATTGAGGAGGATGTCACCACAACAATGTCAACAATGATCTACTCCTTGCAACTCGTGCTGCATTTGAAAAGGTTCCCTAGCTGCTGGTCGGAGAAGACTGAACGTCAGGGTTGAAAGTTGTAGGCTTTGACAtttcagagggagagagcaacgGGATGTGTCTGAAGCACATTTAGCTGTCCGACAGCTGGTCTTCTGTGACTGAAATTTGGAGGCAAGAGAATATCAGAGACAAACAAagtacactgctccaaaaaaataaagggaacactaaaataacacatcctagatctgaatgaatgaaatattcttattaaatacttttttctttacatagttgaatgtgctgacaacaaaaatcacacaaaaatgatcaatggaaatcaaatgtatcaacccatggaggtctggatttggaaggccactcaaaattaaagtggaaaaccacactacaggctgatccaactgatgtaatgtccttaaaacaagtcaaaatgaggctcagtagtgtgtgtggcctccacgtgcctgtatgacctccctacaacgcctgggcatgctcctgatgaagtggcggatggtctcctgagggatctcctcccagacctggactaaagcatctgccaactcctggacagtctgtggtggatggagcgagacatgatgtcccagatgtgctcaattggtgctcgattcaggtctggggaacgggcgggccagtccatagcatcaatgccttcctcttgcatgAACTGCTGatactccagccacatgaggtctagtattgtcttgcattaggaggaacccagggccaaccgcaccagcatatggtctcacaaggggtctgaggatctcatctcggtacctaatggcagtcaggctaccacTGGCcgcccaaagaaatgccaccccacaccatgactgacccaccaaaCCGGTCctactggaggatgttgcaggcagcagaacgtgcTCCAccgcgtctccagactctgtcacatgtgctcagtgtgaacctgctttcatctgtgaagagcacagggcgccagtggcgaatttgccaatcttggtgttctctggcaaatgccaaacgtcctgcacggtgttgggctgtaagcacaacccccacctgtggacgtcgggccatcataccaccctcatggagtctgcacgtttgagcagacacatgcacatttgtggcctgctggaggtcattttgaagggctctggcagtgctcctcctcctcctccctctacctcctacaaaggcggaggtagcggtcctgctggtgggttgttgccctcctacggcttcctccacgtctcctgatgtactggcctgtctcctggtagcgcctccatgctctggacacaaCGCTGACAGAcgcagcaaaccttcttgccacagctcgcattgatgtgccatcctggatgagctgcactacctgagccacttgtgtggttgtagactccgtctcatgctaccactagagtgaaagcaccgccagcattcaaaagtgaccaaaacatcagccaggaagcataggaactgagaagtggtctgtggtccccacctgcagaaccactcctttattgggggtgtcttgctaattgcctataatttccacttgttgtctattccatttgcacaacagcatgtgaaatgtattgtcaatcagtgttgcttcctaagtggacagtttgatttcacagaagtgtgattgacttggagttacattgtgttgtttaagtgttcccttcattttttttgagcagtgtatataatagACTCCCTCCATCCTGGCAACATTATAATGAAATTATTAGGATTTATATTTAATTGCAGGGCCCCGTAACTAAACAAAATTCTCCGCAccactttttaaaattattttttttacctttatttaactaggcaagtcagttaagaacacattcttatttacaatgacggcctaccagggaacagtggattaactgcctgttcaggggcagaacgacagatttgtaccctgtcagctcggggaatcgaacttgcaacctttcggttactagtccaacgctctaaccgctaggccacccctgcctctaaccgctaggccacccctgcctctaaccgctaggccacccctgcctctaaccgctaggccacccctgcctctaaccgctaggccacccctgcctctaaccgctaggccacccctgcctctaaccgctagg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1516753 True 2338 lncRNA 0.49 1 77528442 77530779

Neighbor

gene id symbol gene type direction distance location
LOC118938862 NA coding upstream 110236 77416342 ~ 77505819 (+)
LOC118938861 grip1 coding upstream 1057625 75732149 ~ 76472933 (+)
LOC118938860 NA coding upstream 2156379 75366958 ~ 75372063 (+)
LOC110499731 dyrk2 coding upstream 2162253 75332550 ~ 75366189 (+)
LOC118938859 LOC106593189 coding upstream 2255835 75251801 ~ 75272607 (+)
LOC118938903 NA coding downstream 280062 77810841 ~ 77812644 (+)
LOC110490691 arhgef39 coding downstream 428192 77958971 ~ 78066964 (+)
rergla LOC106609822 coding downstream 564752 78095531 ~ 78107017 (+)
il17r il17r coding downstream 592303 78123082 ~ 78148831 (+)
LOC118938866 LOC108426397 coding downstream 695095 78225874 ~ 78277603 (+)
G1327862 NA non-coding upstream 1032 77527194 ~ 77527410 (+)
G1327860 NA non-coding upstream 2799 77524917 ~ 77525643 (+)
G1327859 NA non-coding upstream 5655 77519259 ~ 77522787 (+)
G1327849 NA non-coding upstream 9446 77517404 ~ 77518996 (+)
G1327858 NA non-coding upstream 12265 77515903 ~ 77516177 (+)
G1327864 NA non-coding downstream 280 77531059 ~ 77531454 (+)
G1327877 NA non-coding downstream 44419 77575198 ~ 77575812 (+)
G1327880 NA non-coding downstream 51254 77582033 ~ 77584067 (+)
G1327884 NA non-coding downstream 60938 77591717 ~ 77597950 (+)
G1327891 NA non-coding downstream 80386 77611165 ~ 77611499 (+)
G1327379 NA other upstream 715154 76809860 ~ 76813288 (+)
G1327230 NA other upstream 938557 76587574 ~ 76589885 (+)
G1326605 NA other upstream 1643295 75884811 ~ 75885147 (+)
G1326586 NA other upstream 1721923 75805999 ~ 75806519 (+)
G1326503 cand1 other upstream 1929927 75593591 ~ 75598515 (+)
G1328201 NA other downstream 539250 78070029 ~ 78070403 (+)
LOC118936267 mrps33 other downstream 1218599 78749330 ~ 78763988 (+)
LOC118938871 braf other downstream 1249552 78780201 ~ 78826735 (+)
G1328968 NA other downstream 1507825 79038604 ~ 79039457 (+)

Expression


Co-expression Network