G1327884


Basic Information

Item Value
gene id G1327884
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 77591717 ~ 77597950 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1516787
accgactgagctagccgggCTTGGAGATACAACCCACAACATCCTAAAATAACACAACTGTTATaccaggttggtaaataacacaccaacatgtaataactatcagaccaggttggtaaataacacaccaacatgcaataactgtcagaccaggttggtaaataacacaccaacatgtaataactgtcagaccaggttggtaaataacacaccagcccaacatgtaataactgtcagaccaggttggtaaataacacaccagcccaacatgtaataactgtcagaccaggttggtaaataacccaccaacatgtaataactgtCAGACCAGATTGGTAAATAACCcaccaacatgtaataactgtcagaccagattggtaaataacacaccaacatgtaataactgtcagaccaggttggtaaataacagcccaacatgtaataactgtcagaccaggttggtaaataacacacc
>TU1516788
accgactgagctagccgggCTTGGAGATACAACCCACAACATCCTAAAATAACACAACTGTTATaccaggttggtaaataacacaccaacatgtaataactatcagaccaggttggtaaataacacaccaacatgcaataactgtcagaccaggttggtaaataacacaccaacatgtaataactgtcagaccaggttggtaaataacacaccagcccaacatgtaataactgtcagaccaggttggtaaataacCCCAGCCCAACATGTAATAACTGTCagaccaggttggtaaataacacaccaacatgtaataactgtcagaccaggttggtaaataacccaccaacatgtaataactgtcagaccaggttggtaaataacacaccaacatgtaataactgtcagaccaggttggtaaataacacaccaacatgtaataactgtcagaccaggttggtaaataacacaccaacatgtaataactgtcagaccaggttggtaaataacacaccaacatgtaataactCAGACCAGgttggtaaataacacaccagcccaacatgtaataactgtcagaccaggttggtaaataacacaccaacatgtaataactgtCAGACCAGGTTGAGAGACAGAGCCTACCAGACGTAGCCTGAATATGCAG

Function

NR:

description
homeobox protein DTH-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1516787 False 475 lncRNA 0.40 3 77591717 77597950
TU1516788 True 667 lncRNA 0.41 3 77591717 77597004

Neighbor

gene id symbol gene type direction distance location
LOC118938862 NA coding upstream 173511 77416342 ~ 77505819 (+)
LOC118938861 grip1 coding upstream 1120900 75732149 ~ 76472933 (+)
LOC118938860 NA coding upstream 2219654 75366958 ~ 75372063 (+)
LOC110499731 dyrk2 coding upstream 2225528 75332550 ~ 75366189 (+)
LOC118938859 LOC106593189 coding upstream 2319110 75251801 ~ 75272607 (+)
LOC118938903 NA coding downstream 212891 77810841 ~ 77812644 (+)
LOC110490691 arhgef39 coding downstream 361021 77958971 ~ 78066964 (+)
rergla LOC106609822 coding downstream 497581 78095531 ~ 78107017 (+)
il17r il17r coding downstream 525132 78123082 ~ 78148831 (+)
LOC118938866 LOC108426397 coding downstream 627924 78225874 ~ 78277603 (+)
G1327880 NA non-coding upstream 7650 77582033 ~ 77584067 (+)
G1327877 NA non-coding upstream 15905 77575198 ~ 77575812 (+)
G1327864 NA non-coding upstream 60263 77531059 ~ 77531454 (+)
G1327863 NA non-coding upstream 60938 77528442 ~ 77530779 (+)
G1327862 NA non-coding upstream 64307 77527194 ~ 77527410 (+)
G1327891 NA non-coding downstream 13215 77611165 ~ 77611499 (+)
G1327960 NA non-coding downstream 25721 77623671 ~ 77623920 (+)
G1327961 NA non-coding downstream 26883 77624833 ~ 77625058 (+)
G1327966 NA non-coding downstream 29384 77627334 ~ 77627740 (+)
G1327994 NA non-coding downstream 52401 77650351 ~ 77650575 (+)
G1327379 NA other upstream 778429 76809860 ~ 76813288 (+)
G1327230 NA other upstream 1001832 76587574 ~ 76589885 (+)
G1326605 NA other upstream 1706570 75884811 ~ 75885147 (+)
G1326586 NA other upstream 1785198 75805999 ~ 75806519 (+)
G1326503 cand1 other upstream 1993202 75593591 ~ 75598515 (+)
G1328201 NA other downstream 472079 78070029 ~ 78070403 (+)
LOC118936267 mrps33 other downstream 1151428 78749330 ~ 78763988 (+)
LOC118938871 braf other downstream 1182381 78780201 ~ 78826735 (+)
G1328968 NA other downstream 1440654 79038604 ~ 79039457 (+)

Expression


Co-expression Network